New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 4450948 =NA (NA)8 (0.060) 3/164 NT NA noncoding (5/85 nt) REP336 (repetitive extragenic palindromic) element; contains 2 REP sequences REP336 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 4450978 = NA (NA)noncoding (35/85 nt) REP336 (repetitive extragenic palindromic) element; contains 2 REP sequences REP336 (repetitive extragenic palindromic) element; contains 2 REP sequences

Only 100 of 174 total aligned reads displayed.

AAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGGGGAAACCATGACGACCGACCAACACCA  >  NC_000913/4450881‑4451077
                                                                                                 |                                                                                                   
aagaagAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGAt                                                                                                   >  2:3364065/1‑100 (MQ=255)
aagaagAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGAt                                                                                                   <  1:2272946/100‑1 (MQ=255)
 agaagaATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATg                                                                                                  <  1:2903592/100‑1 (MQ=255)
  gaagaaTTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATgg                                                                                                 >  2:3534466/1‑100 (MQ=255)
  gaagaaTTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATgg                                                                                                 <  1:1583881/100‑1 (MQ=255)
  gaagaaTTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGACGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATgg                                                                                                 >  1:3057933/1‑100 (MQ=255)
      aaTTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCa                                                                                             <  1:6426/100‑1 (MQ=255)
      aaTTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCa                                                                                             <  2:1894933/100‑1 (MQ=255)
       aTTAGAGAAGTAGAAAAATATGGAATATTGAGGGTTGCTATGCCTGATGCCGAGCCGTAGGACGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCAc                                                                                            <  1:2719290/100‑1 (MQ=25)
       aTTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTg                                                                                               <  1:2802107/97‑1 (MQ=255)
       aTTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCAc                                                                                            >  2:523544/1‑100 (MQ=255)
          agagAAGAAGGAAAATATGGGGTATGGGTGGTTGTTATGCCTGATGCCGATTTGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGa                                                                                         <  1:1662876/100‑1 (MQ=37)
            agaagaagaAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAg                                                                                       <  1:3410801/100‑1 (MQ=255)
            agaagaagaAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAg                                                                                       <  1:2115094/100‑1 (MQ=255)
             gaagaagaaAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAg                                                                                       >  1:1924295/1‑99 (MQ=255)
             gaagaagaaAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGc                                                                                      >  1:3657556/1‑100 (MQ=255)
              aagaagaaAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGcc                                                                                     <  1:3035296/100‑1 (MQ=255)
               agaagaaAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCt                                                                                    <  1:755624/100‑1 (MQ=255)
               agaagaaAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCt                                                                                    <  2:1614170/100‑1 (MQ=255)
                   gaaAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATg                                                                                <  1:1189942/100‑1 (MQ=255)
                    gcatgataagacgcggtaagcgtcgcatcaggcttcagtgcaccatcgccggataaggcgctcgcgccgcatccggcGATGGTGCACTGAAGCCTGATGc                                                                               <  1:1685768‑M2/23‑1 (MQ=255)
                       aaTATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGAc                                                                            >  1:1145525/1‑100 (MQ=255)
                        atatGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACg                                                                           >  2:2393786/1‑100 (MQ=255)
                         tatTGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGc                                                                          <  2:3033499/100‑1 (MQ=255)
                         tatGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGc                                                                          >  2:769858/1‑100 (MQ=255)
                         tatGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGc                                                                          <  1:1292475/100‑1 (MQ=255)
                            ggggTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTa                                                                       >  2:2732841/1‑100 (MQ=255)
                             gggTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTAc                                                                      <  1:1795080/100‑1 (MQ=255)
                               gTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACcg                                                                    >  1:2593455/1‑100 (MQ=255)
                                 aTTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCGCGCGCCGCATCCGGCGATGGTGCACTGAATCCTGATGCGACGCTTACcg                                                                    <  2:1855294/98‑1 (MQ=255)
                                  ttGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGt                                                                 <  2:1124070/100‑1 (MQ=255)
                                   tGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGTGTc                                                                >  2:3231985/1‑100 (MQ=255)
                                   tGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTc                                                                <  2:249330/100‑1 (MQ=255)
                                   tGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTc                                                                <  1:503325/100‑1 (MQ=255)
                                      gggTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTa                                                             >  1:434608/1‑100 (MQ=255)
                                        gTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATc                                                           <  2:2053424/100‑1 (MQ=255)
                                         ttGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCa                                                          <  2:467089/100‑1 (MQ=255)
                                         ttGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCa                                                          <  2:1796560/100‑1 (MQ=255)
                                         ttGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCa                                                          <  1:1423721/100‑1 (MQ=255)
                                           gCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATg                                                        <  2:543703/100‑1 (MQ=255)
                                            cTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGc                                                       <  2:1189982/100‑1 (MQ=255)
                                            cTATGCCTGATGCCGATTCGTAGGCCAGAGAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGc                                                       <  2:2256700/100‑1 (MQ=255)
                                             tATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGcc                                                      <  2:2593844/100‑1 (MQ=255)
                                             tATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGcc                                                      >  2:3260109/1‑100 (MQ=255)
                                             tATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGcc                                                      >  1:525429/1‑100 (MQ=255)
                                                 ccTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACt                                                  >  1:1061577/1‑100 (MQ=255)
                                                    gATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTggg                                               <  2:1852575/100‑1 (MQ=255)
                                                    gATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTggg                                               <  2:297451/100‑1 (MQ=255)
                                                     aTGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTggg                                               <  1:1383679/99‑1 (MQ=255)
                                                      ttccGATTCGCAGCCCCGATACGGCGCTCGCGCCGCCTCCCGCGCTGCTGCACTGAAGCCTGATGCGCCGCCTACCGCCTCTTATCATGCCGAcccgg                                               >  1:3516948/3‑94 (MQ=255)
                                                       gCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGc                                            >  1:3524150/1‑100 (MQ=255)
                                                        ccGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCa                                           <  2:2941270/100‑1 (MQ=255)
                                                        ccGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCa                                           <  2:1488579/100‑1 (MQ=255)
                                                         cGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCAc                                          >  2:1273933/1‑100 (MQ=255)
                                                              cGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCCCGCttt                                     >  1:2107216/1‑100 (MQ=255)
                                                              cGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCttt                                     >  2:2379265/1‑100 (MQ=255)
                                                              cGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCttt                                     <  1:1476953/100‑1 (MQ=255)
                                                              cGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCttt                                     <  1:2710893/100‑1 (MQ=255)
                                                                tAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTac                                   <  1:3264764/100‑1 (MQ=255)
                                                                tAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTac                                   <  2:1221234/100‑1 (MQ=255)
                                                                 aGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTaca                                  <  2:1422054/100‑1 (MQ=255)
                                                                   gccggatgcggcgcgagcgccttatccggcGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACAcc                                >  1:2935469‑M2/31‑100 (MQ=255)
                                                                   GCCGGATGCGGCGCGAGCGCCTTATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACAcc                                <  1:1877697‑M1/100‑1 (MQ=255)
                                                                    ccggatgcggcgcgagcgccttatccggcGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCg                               >  2:2484946‑M2/30‑100 (MQ=255)
                                                                    CCGCATAAGGCGCTCGCGCCGCATCCAGCGATGATGAACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGcttc                                     >  1:2664380‑M1/1‑93 (MQ=255)
                                                                     CGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCgg                              >  1:1557176‑M1/1‑100 (MQ=255)
                                                                     CGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACCGGGAGCACGCTTTACACCgg                              >  1:2318844‑M1/1‑100 (MQ=255)
                                                                      GGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCggg                             >  1:2184286‑M1/1‑100 (MQ=255)
                                                                       GATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTGTCATGCCTACTGGGAGCACGCTTTACACCgggg                            <  1:491560‑M1/100‑1 (MQ=255)
                                                                       GATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCgggg                            >  2:15013‑M1/1‑100 (MQ=255)
                                                                       GATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCgggg                            <  2:3601507‑M1/100‑1 (MQ=255)
                                                                       GATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCgggg                            >  2:208795‑M1/1‑100 (MQ=255)
                                                                        ATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCggggg                           <  1:118060‑M1/100‑1 (MQ=255)
                                                                        ATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCCTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCgggg                            >  1:3573855‑M1/1‑99 (MQ=255)
                                                                           aGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGGGGaaa                        >  1:2123888/1‑100 (MQ=255)
                                                                           aGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGGGGaaa                        >  2:2652314/1‑100 (MQ=255)
                                                                            ggCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGGGGAAAc                       <  2:2455407/100‑1 (MQ=255)
                                                                            ggCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGGGGAAAc                       >  1:601435/1‑100 (MQ=255)
                                                                            ggCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGGGGAAAc                       >  2:302268/1‑100 (MQ=255)
                                                                             gcgcTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGGGGAAAcc                      >  1:2704418/1‑100 (MQ=255)
                                                                              cgcTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGGGGAAACCa                     >  1:1328918/1‑100 (MQ=255)
                                                                               gcTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGGGGAAACCAt                    >  2:2288238/1‑100 (MQ=255)
                                                                                cTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGGGGAAACCATg                   >  2:3485772/1‑100 (MQ=255)
                                                                                  cgcgCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGGGGAAACCATgac                 <  1:2060111/100‑1 (MQ=255)
                                                                                  cgcgCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGGGGAAACCATgac                 >  2:2817912/1‑100 (MQ=255)
                                                                                    cgccgcATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGGGGAAACCATgacga               >  1:2461122/1‑100 (MQ=255)
                                                                                    cgccgcATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGGGGAAACCATgacga               >  2:794513/1‑100 (MQ=255)
                                                                                     gccgcATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGGGGAAACCATgacgac              >  1:1957311/1‑100 (MQ=255)
                                                                                     gccgcATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGGGGAAACCATgacgac              <  2:2141078/100‑1 (MQ=255)
                                                                                        gcATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGGGGAAACCATGAcgaccga           <  1:810384/100‑1 (MQ=255)
                                                                                        gcATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGGCTTATCATGACTACTGGGAGGACGCGTTACACCGGGGGAAACCATGAcgcccg            >  1:3304353/1‑99 (MQ=38)
                                                                                         cATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGGGGAAACCATGAcgaccgac          <  2:2846175/100‑1 (MQ=255)
                                                                                             cggcGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGGGGAAACCATGACGACCGACCAac      >  2:3737150‑M2/5‑100 (MQ=255)
                                                                                             cggcGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGGGGAAACCATGACGACCGACCAac      >  1:3687757‑M2/5‑100 (MQ=255)
                                                                                             cggcGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGGGGAAACCATGACGACCGACCAac      >  1:1034108‑M2/5‑100 (MQ=255)
                                                                                             cggcGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCGTATCATGCCTACTGGGAGCACGCTTTACCCCGGGGGAAACCATGACGACCGACCa        >  1:3224348‑M2/5‑98 (MQ=255)
                                                                                               gcGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGGGGAAACCATGACGACCGACCAacac    >  1:2454895‑M2/3‑100 (MQ=255)
                                                                                                 gATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGGGGAAACCATGACGACCGACCAACACCa  <  2:3006485/100‑1 (MQ=255)
                                                                                                 gATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGGGGAAACCATGACGACCGACCAACACCa  <  1:776234/100‑1 (MQ=255)
                                                                                                 gATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGGGGAAACCATGACGACCGACCAACACCa  <  1:2405260/100‑1 (MQ=255)
                                                                                                 |                                                                                                   
AAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGGGGAAACCATGACGACCGACCAACACCA  >  NC_000913/4450881‑4451077

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.