New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 4628815 =163 (1.170)4 (0.030) 3/164 NT 2.5% noncoding (121/150 nt) RIP354 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site RIP354 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site
?NC_000913 4628845 = 157 (1.220)intergenic (+298/+10) nadR/ettA trifunctional protein: nicotinamide mononucleotide adenylyltransferase, ribosylnicotinamide kinase, transcriptional repressor/energy‑dependent translational throttle A
Rejected: Frequency below cutoff threshold.

Only 100 of 213 total aligned reads displayed.

GATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTCTGCGCCCAGCGTGCGTTTCTTGTACTCTTCGTACTCGGTAAA  >  NC_000913/4628747‑4628944
                                                                                                  |                                                                                                   
gctgggcgcagacgcgctggagccgaagcgtatcaagtacaagcgtattgcgaagtaatgcgtaaaatGCCGGATAAGGCGTTCGCGCCGCATCCGGCAt                                                                                                    >  1:2368482‑M1/69‑100 (MQ=255)
  tgggcgcagacgcgctggagccgaagcgtatcaagtacaagcgtattgcgaagtaatgcgtaaaatGCCGGATAAGGCGTTCGCGCCGCATCCGGCAttt                                                                                                  >  1:1199433‑M1/67‑100 (MQ=255)
   gggcgcggtcgcgctggagccgaagcgtatcaagtacaagcgtattgcgaagtaatgcgtaaaatGCCGGATAAGGCGTTCGCGCCGCATCCGGCAt                                                                                                    >  1:3074901‑M1/66‑97 (MQ=255)
    cGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTa                                                                                                <  1:3172996/100‑1 (MQ=255)
    cGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTa                                                                                                >  1:3572936/1‑100 (MQ=255)
     gACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTa                                                                                                <  1:446441/99‑1 (MQ=255)
     gACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTAc                                                                                               <  2:2877172/100‑1 (MQ=255)
     gACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTAc                                                                                               <  1:598092/100‑1 (MQ=255)
         cTTACCGCGTCTTATCAGGCCTACAGGTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCAt                                                                                           >  2:2316051/1‑100 (MQ=255)
           tACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGACATTGCTGGTTTTGTCGGCCGGCTAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTa                                                                                         >  1:3279517/1‑100 (MQ=255)
           tACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTa                                                                                         >  2:2416570/1‑100 (MQ=255)
            aCCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTAc                                                                                        >  1:2233668/1‑100 (MQ=255)
            aCCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTAc                                                                                        >  1:2594588/1‑100 (MQ=255)
            aCCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTAc                                                                                        <  2:2167446/100‑1 (MQ=255)
            aCCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTAc                                                                                        >  2:246500/1‑100 (MQ=255)
              cgcgTCTTATCAGGCCTACAGTTTTATAACGTATTGAAATTGCTGGTTTTGTAGGCCGGTTAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACtt                                                                                      >  1:386083/1‑100 (MQ=255)
              cgcgTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACtt                                                                                      >  1:662994/1‑100 (MQ=255)
              cgcgTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACtt                                                                                      <  2:906668/100‑1 (MQ=255)
              cgcgTCTTATCAGGCCTACAGCTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTAc                                                                                        <  1:923321/98‑1 (MQ=255)
                cgTCTTATCAGGCCGACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCg                                                                                    <  2:1050228/100‑1 (MQ=255)
                 gTCTTATCAGGCCTACAGTTTTACACCGTATTGAAATCGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGc                                                                                   <  2:2607906/100‑1 (MQ=255)
                 gTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGc                                                                                   <  2:1610265/100‑1 (MQ=255)
                 gTCTTATCAGGCCTACAGTTCTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATACGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGc                                                                                   <  1:1584065/100‑1 (MQ=255)
                     tATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATa                                                                               >  2:1346210/1‑100 (MQ=255)
                     tATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATa                                                                               >  2:3102681/1‑100 (MQ=255)
                     tATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGGTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATa                                                                               >  1:1384335/1‑100 (MQ=255)
                      aTCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATAc                                                                              >  1:2694439/1‑100 (MQ=255)
                       tCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACg                                                                             <  2:580189/100‑1 (MQ=255)
                        cAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGc                                                                            >  1:1917548/1‑100 (MQ=255)
                         aGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCt                                                                           >  1:861276/1‑100 (MQ=255)
                          ggCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCtt                                                                          >  2:2205855/1‑100 (MQ=255)
                             cTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTa                                                                       >  1:2242685/1‑100 (MQ=255)
                             cTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTa                                                                       >  1:1300559/1‑100 (MQ=255)
                              tACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTAc                                                                      <  1:2272902/100‑1 (MQ=255)
                              tACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTAc                                                                      >  2:2373597/1‑100 (MQ=255)
                              tACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTAc                                                                      <  1:3645954/100‑1 (MQ=255)
                                cAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACtt                                                                    <  2:2862572/100‑1 (MQ=255)
                                cAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACtt                                                                    >  1:1000486/1‑100 (MQ=255)
                                 aGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTg                                                                   <  1:3469873/100‑1 (MQ=255)
                                 aGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTg                                                                   <  2:3614594/100‑1 (MQ=255)
                                  gTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGa                                                                  >  2:3221167/1‑100 (MQ=255)
                                   ttttACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGAt                                                                 <  1:2715462/100‑1 (MQ=255)
                                     ttACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATAc                                                               <  1:1479190/100‑1 (MQ=255)
                                       aCAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATATTACGCATTACTTCGCAATACGCTTGTACTTGATACGc                                                             >  1:2063616/1‑100 (MQ=255)
                                        cAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCt                                                            >  2:166736/1‑100 (MQ=255)
                                        cAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCt                                                            >  1:2902924/1‑100 (MQ=255)
                                        cAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCt                                                            <  2:2747038/100‑1 (MQ=255)
                                          aCGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTc                                                          <  1:3352138/100‑1 (MQ=255)
                                             tATTGAAATTGTTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCACTTTACGCATTACTTCGCTATACGCTTGTACTTGATACGCTTCGGc                                                       <  2:2188231/100‑1 (MQ=255)
                                             tATTGAAATTGCTGGTTTTGTAGTCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGc                                                       <  1:2214707/100‑1 (MQ=255)
                                             tATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGc                                                       >  2:208075/1‑100 (MQ=255)
                                              aTTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCt                                                      >  1:1955388/1‑100 (MQ=255)
                                              aTTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCt                                                      <  1:3673031/100‑1 (MQ=255)
                                              aTTGAAATTGCGGGTTTTGTACGCCGGATATGGCGTGCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGc                                                       <  1:2569521/99‑1 (MQ=38)
                                               ttGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTc                                                     >  2:2655665/1‑100 (MQ=255)
                                                    aTTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAgcg                                                <  2:209882/100‑1 (MQ=255)
                                                        cTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTc                                            >  2:2946011/1‑100 (MQ=255)
                                                        cTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTc                                            <  2:206391/100‑1 (MQ=255)
                                                        cTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTc                                            <  2:175227/100‑1 (MQ=255)
                                                          ggTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTTCAGCGCGTCTg                                          >  1:3076068/1‑100 (MQ=255)
                                                          ggTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTCTg                                          >  2:2447850/1‑100 (MQ=255)
                                                            ttttGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTCTgcg                                        >  1:501687/1‑100 (MQ=255)
                                                             tttGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTCTgcgc                                       <  2:2706292/100‑1 (MQ=255)
                                                                gTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTCTGCGCCCa                                    >  2:3260380/1‑100 (MQ=255)
                                                                 tAGGCCGGATAAGGCGTTCGCGCCGCATTCGGCATTTTACGCAGTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCATCGCGTCTGCGCCCAg                                   <  1:1817684/100‑1 (MQ=255)
                                                                  aGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTCTGCGCCCAgc                                  >  1:156504/1‑100 (MQ=255)
                                                                   tgccggatgcggcgcgaacgccttatccggcATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTCTGCGCCCAgcg                                 >  1:166771‑M2/32‑100 (MQ=255)
                                                                   ggCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTATGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTCTGCGCCCAgcg                                 >  1:2033712/1‑100 (MQ=255)
                                                                   ggCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTCTGCGCCCAgcg                                 >  2:1170919/1‑100 (MQ=255)
                                                                   ggCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTCTGCGCCCAgcg                                 >  2:811109/1‑100 (MQ=255)
                                                                   ggCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACACTTCGGCTCCAGCGCGTCTGCGGCCAgc                                  >  1:1228060/1‑99 (MQ=255)
                                                                    GCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTCTGCGCCCAgc                                  <  1:1684822‑M1/98‑1 (MQ=255)
                                                                     CCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTCTGCGCCCAgcgtg                               <  2:7053‑M1/100‑1 (MQ=255)
                                                                       GGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTCTGCGCCCAgcgtgcg                             >  1:3233606‑M1/1‑100 (MQ=255)
                                                                       GGATAAGGCGGTCGCGCCGCATCCGTCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTCTGCGCCCAgcgtgcg                             >  1:534553‑M1/1‑100 (MQ=255)
                                                                        GATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTCTGCGCCCAgcgtgcgt                            <  2:1448635‑M1/100‑1 (MQ=255)
                                                                         ATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTCTGCGCCCAGCGTGCGtt                           >  2:30030‑M1/1‑100 (MQ=255)
                                                                           aaGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTCTGCGCCCAGCGTGCGTTTc                         <  2:658278/100‑1 (MQ=255)
                                                                             ggCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTCTGCGCCCAGCGTGCGTTTCtt                       <  2:1468817/100‑1 (MQ=255)
                                                                             ggCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTCTGCGCCCAGCGTGCGTTTCtt                       >  2:2736784/1‑100 (MQ=255)
                                                                             ggCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTCTGCGCCCAGCGTGCGTTTCtt                       <  1:192866/100‑1 (MQ=255)
                                                                             ggCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTCTGCGCCCAGCGTGCGTTTCtt                       >  2:1548692/1‑100 (MQ=255)
                                                                              gCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTCTGCGCCCAGCGTGCGTTTCTTg                      <  2:1656141/100‑1 (MQ=255)
                                                                              gCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTCTGCGCCCAGCGTGCGTTTCTTg                      <  1:2464926/100‑1 (MQ=255)
                                                                              gCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTCTGCGCCCAGCGTGCGTTTCTTg                      >  2:1017068/1‑100 (MQ=255)
                                                                              gCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTCTGCGCCCAGCGTGCGTTTCTTg                      <  1:2647636/100‑1 (MQ=255)
                                                                                 ttCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTCTGCGCCCAGCGTGCGTTTCTTGTAc                   <  2:3447919/100‑1 (MQ=255)
                                                                                      gccgcATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTCTGCGCCCAGCGTGCGTTTCTTGTACTCTTc              <  1:1433614/100‑1 (MQ=255)
                                                                                      gccgcATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTCTGCGCCCAGCGTGCGTTTCTTGTACTCTTc              <  2:3688880/100‑1 (MQ=255)
                                                                                        cgcATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTCTGCGCCCAGCGTGCGTTTCTTGTACTCTTCGt            <  2:3608275/100‑1 (MQ=255)
                                                                                        cgcATCCGGCATTTTACGCATTACTTAGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTCAGCGCCCAGCGTGCGTTTCTTGTACTCTTCGt            >  1:3592399/1‑100 (MQ=255)
                                                                                            tccggcATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTCTGCGCCCAGCGTGCGTTTCTTGTACTCTTCGTACTc        <  1:3797177‑M2/94‑1 (MQ=255)
                                                                                             ccggcATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTCTGCGCCCAGCGTGCGTTTCTTGTACTCTTCGTACTCg       >  2:198647‑M2/6‑100 (MQ=255)
                                                                                              cggcATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTCTGCGCCCAGCGTGCGTTTCTTGTACTCTTCGTACTCgg      >  2:3776256‑M2/5‑100 (MQ=255)
                                                                                              cggcATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTCTGCGCCCAGCGTGCGTTTCTTGTACTCTTCGTACTCgg      <  2:3525252‑M2/96‑1 (MQ=255)
                                                                                              cggcATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTCTGCGCCCAGCGTGCGTTTCTTGTACTCTTCGTACTCgg      <  2:192122‑M2/96‑1 (MQ=255)
                                                                                              cggcATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTCTGCGCCCAGCGTGCGTTTCTTGTACTCTTCGTACTCgg      <  1:1111647‑M2/96‑1 (MQ=255)
                                                                                               ggcATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTCTGCGCCCAGCGTGCGTTTCTTGTACTCTTCGTACTCgg      <  2:465060‑M2/96‑1 (MQ=255)
                                                                                                gcATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGAGTCTGCGCCCAGCGTGCGTTTCTTGTACTCTTCGTACTCCGTa    >  1:2432462‑M2/3‑100 (MQ=255)
                                                                                                  aTTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTCTGCGCCCAGCGTGCGTTTCTTGTACTCTTCGTACTCGGTaaa  >  2:469859/1‑100 (MQ=255)
                                                                                                  |                                                                                                   
GATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTCTGCGCCCAGCGTGCGTTTCTTGTACTCTTCGTACTCGGTAAA  >  NC_000913/4628747‑4628944

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.