New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 526041	NA (NA)	4 (0.030)	3/170	NT	100%	coding (2781/4281 nt)	rhsD	Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
	?	NC_000913	= 526069	0 (0.000)					coding (2809/4281 nt)	rhsD	Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor

CCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCGGACCCGGAGCTGCACCCGGACAGTACACTCACAGTGTGGCCGGATAACCGCATCGCGGAGGATGCGCACTATGTCTACCGCCACGATGAATACGGCAGGCTGACGGAGAAGACGGACCGCATCCCGGCGGGTGTGATACGGA  >  NC_000913/525970‑526168                                                                                                    |                                                                                                    ccAGACCTGGCCATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCGGACCCGGAGATGTACCCGGACAGTACACTCACAGTGTGGCCGG                                                                                                     >  1:2489860‑M2/1‑100 (MQ=255) ccAGACCTGGCCATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCGGACCCGGAGATGCACCCGGACAGTACACTCACAGTGTGGCCGG                                                                                                     >  1:2489852‑M2/1‑100 (MQ=255) ccAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCGGACCCGGAGCTGCACCCGGACAGTACACTCACAGTGTGGCCGG                                                                                                     <  2:3531791‑M2/100‑1 (MQ=255) ccAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCGGACCCGGAGCTGCACCCGGACAGTACACTCACAGTGTGGCCGG                                                                                                     <  2:3307907‑M2/100‑1 (MQ=255) ccAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCGGACCCGGAGCTGCACCCGGACAGTACACTCACAGTGTGGCCGG                                                                                                     >  2:2970741‑M2/1‑100 (MQ=255) ccAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCGGACCCGGAGCTGCACCCGGACAGTACACTCACAGTGTGGCCGG                                                                                                     >  2:234557‑M2/1‑100 (MQ=255) ccAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCGGACCCGGAGCTGCACCCGGACAGTACACTCACAGTGTGGCCGG                                                                                                     >  2:1787743‑M2/1‑100 (MQ=255) ccAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCGGACCCGGAGCTGCACCCGGACAGTACAATCACAGTGTGGCCGG                                                                                                     <  2:3746036‑M2/100‑1 (MQ=255)  cAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCGGACCCGGAGCTGCACCCGGACAGTACACTCACAGTGTGGCCGG                                                                                                     >  1:668728‑M2/1‑99 (MQ=255)                                                                     gCACCCGGACAGTACACTCACAGTGTGGCCGGgtgcagctccgggtccggcagccggttgcccgccgggtccgtggcatacgggatgcggatgtccaggt                                 <  1:132702‑M2/100‑69 (MQ=255)                                                                       aCCCGGACAGTACACTCACAGTGTGGCCGGgtgcagctccgggtccggcagccggttgcccgccgggtccgtggcctacgggctgcggatgtcccggtct                               <  1:2529847‑M2/100‑71 (MQ=255)                                                                       aCCCGGACAGTACACTCACAGTGTGGCCGGgtgcagctccgggtccggcagccggttgcccgccgggtccgtggcatacgggatgcggatgtccaggtct                               <  2:3125498‑M2/100‑71 (MQ=255)                                                                        cccGGACAGTACACTCACAGTGTGGCCGGgtgcagctccgggtccggcagccggttgcccgccgggtccgtggcatacgggatgcggatgtccaggtctg                              <  1:712656‑M2/100‑72 (MQ=255)                                                                                                 ccGGgtgcagctccgggtccggcagccggttgcccgccgggtccgtggcatacgggatgcggatgtccaggtctggtgcgagggtgcgcacactctccag     <  2:2279315‑M2/100‑97 (MQ=255)                                                                                                 ccGGgtgcagctccgggtccggcagccggttgcccgccgggtccgtggcatacgggatgcggatgtccaggtctggtgcgagggtgcgcacactctccag     >  2:3413072‑M2/1‑4 (MQ=255)                                                                                                 ccGGgtgcagctccgggtccggcagccggttgcccgccgggtccgtggcatacgggatgcggatgtccaggtctggtgcgagggtgcgcacactctccag     >  2:200233‑M2/1‑4 (MQ=255)                                                                                                  cGGgtgcagctccgggtccggcagccggttgcccgccgggtccgtggcctacgggatgcggatgtccaggtctggtgcgagggtgcgcacactctccagc    >  2:1325142‑M2/1‑3 (MQ=255)                                                                                                  cGGgtgcagctccgggtccggcagccggttgcccgccgggtccgtggcatacgggatgcggatgtccaggtctggtgcgagggtgcgcacactctccagc    <  1:2962607‑M2/100‑98 (MQ=255)                                                                                                  cGGgtgcagctccgggtccggcagccggttgcccgccgggtccgtggcatacgggatgcggatgtccaggtctggtgcgagggtgcgcacactctccagc    <  2:3205131‑M2/100‑98 (MQ=255)                                                                                                  cGGgtgcagctccgggtccggcagccggttgcccgccgggtccgtggcatacgggatgcggatgtccaggtctggtgcgagggtgcgcacactctccagc    >  1:1581054‑M2/1‑3 (MQ=255)                                                                                                   gggtgcagctccgggtccggcagccggttgcccgccgggtccgtggcctacgggatgcggatgtccaggtctggtgcgacggcgcgcacactctccagcc   <  1:1766299‑M2/100‑99 (MQ=255)                                                                                                   gggtgcagctccgggtccggcagccggttgcccgccgggtccgtggcatacgggatgcggatgtccaggtctggtgcgagggtgcgtacactctccagac   >  2:2575050‑M2/1‑2 (MQ=255)                                                                                                   gggtgcagctccgggtccggcagccggttgcccgccgggtccgtggcatacgggatgcggatgtccaggtctggtgcgagggtgcgcacactctccagcc   >  2:192859‑M2/1‑2 (MQ=255)                                                                                                   gggtgcagctccgggtccggcagccggttgcccgccgggtccgtggcatacgggatgcggatgtccaggtctggtgcgagggtgcgcacactctccagcc   >  2:1842849‑M2/1‑2 (MQ=255)                                                                                                   gggtgcagctccgggtccggcagccggttgcccgccgggtccgtggcatacgggatgcggatgtccaggtctggtgcgagggtgcgcacactctccagcc   <  1:2746118‑M2/100‑99 (MQ=255)                                                                                                   gggtgcagctccgggtccggcagccggttgcccgccgggtccgtggcatacgggatgcggatgtccaggtctggtgcgagggtgcgcacactctccagcc   >  1:542069‑M2/1‑2 (MQ=255)                                                                                                   gggtgcagctccgggtccggcagccggttgcccgccgggtccgtggcatacgggatgcggatgtccaggtctggtgcgagggtgcgcacactctccagc    >  1:3762574‑M2/1‑2 (MQ=255)                                                                                                    ggtgcagctccgggtccggcagccggttgcccgccgggtccgtggcatacgggatgcggctgtccaggtgtggtgcgagggtgcgcacactctccagcct  <  1:1638979‑M2/100‑100 (MQ=255)                                                                                                    ggtgcagctccgggtccggcagccgggtgcccgccgggtccgtggcatacgggatgcggatgtccaggtctggtgcgagggtgcgcacactctccagcc   >  2:3546146‑M2/1‑1 (MQ=255)                                                                                                    |                                                                                                    CCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCGGACCCGGAGCTGCACCCGGACAGTACACTCACAGTGTGGCCGGATAACCGCATCGCGGAGGATGCGCACTATGTCTACCGCCACGATGAATACGGCAGGCTGACGGAGAAGACGGACCGCATCCCGGCGGGTGTGATACGGA  >  NC_000913/525970‑526168

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.