BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
MC JC	NC_000913	3,815,859	Δ82 bp	100%		[rph]–[rph]	[rph], [rph]

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	3815859	3815940	82	164 [0]	[2] 163	[rph]–[rph]	[rph], [rph]

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3815858	0 (0.000)	139 (1.130)	79/158	NT	99.6%	pseudogene (24/48 nt)	rph	ribonuclease PH (defective);enzyme; Degradation of RNA; RNase PH
*	?	NC_000913	3815941 =	1 (0.010)	139 (1.130)	79/158	NT	99.6%	pseudogene (609/669 nt)	rph	ribonuclease PH (defective);enzyme; Degradation of RNA; RNase PH

Only 100 of 163 total aligned reads displayed.

CCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGC  >  NC_000913/3815842‑3816039

tggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcc                                                                                                    >  2:290079‑M2/100‑100 (MQ=255)

 ggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCg                                                                                                   >  1:2893091‑M2/99‑100 (MQ=255)

    ttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTcc                                                                                                <  2:841589‑M2/5‑1 (MQ=255)

      catgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTcccc                                                                                              <  2:1824154‑M2/7‑1 (MQ=255)

       atgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCt                                                                                             <  1:3803635‑M2/8‑1 (MQ=255)

       atgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCt                                                                                             >  2:2462873‑M2/93‑100 (MQ=255)

         gccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGc                                                                                           <  1:844257‑M2/10‑1 (MQ=255)

          ccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCa                                                                                          <  1:2701016‑M2/11‑1 (MQ=255)

           cttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcattcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCAc                                                                                         >  1:3075839‑M2/89‑100 (MQ=255)

           cttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCAc                                                                                         <  2:2967652‑M2/12‑1 (MQ=255)

            ttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACt                                                                                        >  2:3228806‑M2/88‑100 (MQ=255)

              cgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTc                                                                                      <  2:866321‑M2/15‑1 (MQ=255)

               gctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCa                                                                                     >  2:804440‑M2/85‑100 (MQ=255)

               gctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCa                                                                                     >  1:3798338‑M2/85‑100 (MQ=255)

                 tcttcatcttacttttctacagacaaaaaaaaagcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCaa                                                                                    <  2:1248019‑M2/17‑1 (MQ=255)

                  cctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAatg                                                                                  <  1:3632893‑M2/19‑1 (MQ=255)

                  cctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAatg                                                                                  <  1:3158418‑M2/19‑1 (MQ=255)

                    tcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAatgat                                                                                <  1:1341495‑M2/21‑1 (MQ=255)

                     catcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAatgatg                                                                               <  1:1718893‑M2/22‑1 (MQ=255)

                       tcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATgcg                                                                             >  1:871250‑M2/77‑100 (MQ=255)

                          tacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGccc                                                                          >  1:2207157‑M2/74‑100 (MQ=255)

                          tacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGccc                                                                          >  2:2059210‑M2/74‑100 (MQ=255)

                            cttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGt                                                                        <  1:3304229‑M2/29‑1 (MQ=255)

                            cttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGt                                                                        >  2:3482430‑M2/72‑100 (MQ=255)

                             ttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTc                                                                       >  2:132295‑M2/71‑100 (MQ=255)

                              tttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCt                                                                      >  2:1407834‑M2/70‑100 (MQ=255)

                               ttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCtt                                                                     >  1:2600741‑M2/69‑100 (MQ=255)

                                 ctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCg                                                                   >  2:1695255‑M2/67‑100 (MQ=255)

                                 ctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCg                                                                   >  1:1939279‑M2/67‑100 (MQ=255)

                                  tacatacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCgg                                                                  <  1:2446434‑M2/35‑1 (MQ=255)

                                  tacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCgg                                                                  <  1:1963038‑M2/35‑1 (MQ=255)

                                  tacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCgg                                                                  <  1:231009‑M2/35‑1 (MQ=255)

                                  tacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCgg                                                                  >  1:3195235‑M2/66‑100 (MQ=255)

                                  tacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCgg                                                                  >  2:1230830‑M2/66‑100 (MQ=255)

                                   acagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGt                                                                 <  2:69593‑M2/36‑1 (MQ=255)

                                    cagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCACTGATGCGCCCGTCTTCGAtc                                                                >  1:1831295‑M2/64‑100 (MQ=255)

                                       agaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGtcatc                                                             >  2:2571231‑M2/61‑100 (MQ=255)

                                       acaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGtcatc                                                             <  1:351101‑M2/40‑1 (MQ=255)

                                        caaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGtcatca                                                            <  1:1084492‑M2/41‑1 (MQ=255)

                                        caaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGtcatca                                                            >  2:595182‑M2/60‑100 (MQ=255)

                                        caaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGtcatca                                                            >  2:3660022‑M2/60‑100 (MQ=255)

                                        caaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGtcatca                                                            >  2:3229378‑M2/60‑100 (MQ=255)

                                         aaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCAc                                                           <  1:3229354‑M2/42‑1 (MQ=255)

                                         aaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCAc                                                           >  1:2463567‑M2/59‑100 (MQ=255)

                                         aaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCAc                                                           >  2:3460316‑M2/59‑100 (MQ=255)

                                          tttttaaggcgactgatgagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGCCTTCGGTCATCACt                                                          >  1:3399714‑M2/58‑100 (MQ=255)

                                          aaaaaaaggtgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCAc                                                           >  1:2098576‑M2/58‑99 (MQ=255)

                                          aaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACt                                                          >  2:1800427‑M2/58‑100 (MQ=255)

                                            aaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTAc                                                        >  2:1464128‑M2/56‑100 (MQ=255)

                                             aaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACg                                                       <  1:909007‑M2/46‑1 (MQ=255)

                                              aaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGt                                                      <  2:2274337‑M2/47‑1 (MQ=255)

                                               aagtcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTTCGCTTCACTTCAATGATGCGTCCGTCTTCGGTCATCACTACGtt                                                     <  1:2865‑M2/48‑1 (MQ=255)

                                               aaggcgactgatgagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGtt                                                     >  1:1913885‑M2/53‑100 (MQ=255)

                                                aggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTc                                                    >  1:2265887‑M2/52‑100 (MQ=255)

                                                 ggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCa                                                   <  2:2319824‑M2/50‑1 (MQ=255)

                                                 ggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCa                                                   >  1:1192902‑M2/51‑100 (MQ=255)

                                                  gcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCAt                                                  <  1:3249833‑M2/51‑1 (MQ=255)

                                                   cgactcatcagttgccttaaaaaacagtttgccagcgccgccttctgcACTCCCCTGCACTTCAATGATGCGCCCGTCTTCGCTCATCACTACGTTCATg                                                 >  1:1299358‑M2/49‑100 (MQ=255)

                                                   cgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATg                                                 >  1:2974410‑M2/49‑100 (MQ=255)

                                                    gactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGt                                                >  2:955310‑M2/48‑100 (MQ=255)

                                                     actcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTc                                               <  1:1572497‑M2/54‑1 (MQ=255)

                                                       tcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCgg                                             <  2:743253‑M2/56‑1 (MQ=255)

                                                       tcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCgg                                             <  2:655888‑M2/56‑1 (MQ=255)

                                                       aacaaGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCgg                                             >  1:50723/1‑100 (MQ=255)

                                                        catcagtcgccttaaaaatcagtttgccagcgccgccttctgcTGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCg                                              >  2:1681636‑M2/44‑98 (MQ=255)

                                                        catcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGt                                            >  2:143934‑M2/44‑100 (MQ=255)

                                                        catcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGt                                            >  2:2256795‑M2/44‑100 (MQ=255)

                                                         atcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGtc                                           >  1:14946‑M2/43‑100 (MQ=255)

                                                           cagtctgcttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATg                                                 <  1:2127637‑M2/52‑1 (MQ=255)

                                                           cagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGtctc                                         <  1:3092077‑M2/60‑1 (MQ=255)

                                                             gtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTg                                       <  1:301851‑M2/62‑1 (MQ=255)

                                                                gccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCgg                                    >  1:3443893‑M2/36‑100 (MQ=255)

                                                                gccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCgg                                    >  2:2368320‑M2/36‑100 (MQ=255)

                                                                gccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCgg                                    <  1:1654522‑M2/65‑1 (MQ=255)

                                                                 ccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGc                                   >  2:2152845‑M2/35‑100 (MQ=255)

                                                                 ccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGc                                   >  2:3087218‑M2/35‑100 (MQ=255)

                                                                    taaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCaga                                >  2:513040‑M2/32‑100 (MQ=255)

                                                                        aatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCt                            <  2:1231082‑M2/73‑1 (MQ=255)

                                                                          tcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCt                            <  2:2076201‑M2/73‑1 (MQ=255)

                                                                             gtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCt                            <  1:531620‑M2/73‑1 (MQ=255)

                                                                             gtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAAc                       <  2:2600756‑M2/78‑1 (MQ=255)

                                                                             gtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAAc                       >  1:2754765‑M2/23‑100 (MQ=255)

                                                                             gtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAAc                       >  2:1067922‑M2/23‑100 (MQ=255)

                                                                              tttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACg                      <  1:2272460‑M2/79‑1 (MQ=255)

                                                                               ttgccagcgccgccttctccCGTCCCCTCCACTTCAATGTTGCGCCCGTCTTCGGTCAGCCCTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACg                      <  2:1119974‑M2/79‑1 (MQ=255)

                                                                                  ccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTAtt                  >  1:2138707‑M2/18‑100 (MQ=255)

                                                                                  ccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTAtt                  >  1:3463407‑M2/18‑100 (MQ=255)

                                                                                      cgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAg              <  1:65194‑M2/87‑1 (MQ=255)

                                                                                        ccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGAt            <  2:905764‑M2/89‑1 (MQ=255)

                                                                                        ccGCCTTCTGCCGTCCCCTGCACTCCAATGATGCGCCCGTCTTCGGTTCTCACTACGCTCATGTCGCTCTCGGCGGCCGACTCTTCAACGTATTCCa               >  1:179426/2‑97 (MQ=255)

                                                                                         cgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATc           <  2:695806‑M2/90‑1 (MQ=255)

                                                                                          gccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCg          <  2:2775042‑M2/91‑1 (MQ=255)

                                                                                           ccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGCTCg          <  1:2381269‑M2/91‑1 (MQ=255)

                                                                                           ccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGc         <  2:1006961‑M2/92‑1 (MQ=255)

                                                                                            cttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCa        >  1:3269026‑M2/8‑100 (MQ=255)

                                                                                            cttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACGACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCa        <  2:3524686‑M2/93‑1 (MQ=255)

                                                                                               ctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAAc     >  2:142552‑M2/5‑100 (MQ=255)

                                                                                                tgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAAcc    <  2:188738‑M2/97‑1 (MQ=255)

                                                                                                tgcCGTCCCCTGCACTTCAATGATGCCCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAAc     >  2:3676106‑M2/4‑99 (MQ=255)

                                                                                                  cCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGc  <  2:77672‑M2/99‑1 (MQ=255)

CCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGC  >  NC_000913/3815842‑3816039

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`