| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 3,888,213 | Δ1 bp | 16.0% | intergenic (+21/‑222) | mnmE → / → tnaC | tRNA U34 5‑methylaminomethyl‑2‑thiouridine modification GTPase/tryptophanase leader peptide |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,888,212 | 0 | T | . | 16.0% | 547.8 / 103.6 | 194 | intergenic (+20/‑223) | mnmE/tnaC | tRNA U34 5‑methylaminomethyl‑2‑thiouridine modification GTPase/tryptophanase leader peptide |
| Reads supporting (aligned to +/- strand): ref base T (81/82); new base . (14/17); total (95/99) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.98e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.88e-01 | |||||||||||
Only 100 of 198 total aligned reads displayed.
ACTTAAGCGAAATCACCGGGGAATTTACTTCAGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACTGTCAG‑ATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCCTTT‑TTTTAAACATTAAAATTCTTACGTAATTTATAATCTTTA > NC_000913/3888113‑3888311 | aCTTAAGCGAAATCACCGGGGAATTTACTTCAGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCAt > 1:361368/1‑100 (MQ=255) tAAGCGAAATCACCGGGGAATTTACTTCAGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCt > 1:3550560/1‑100 (MQ=255) aaGCGAAATCACCGGGGAATTTACTAAAGAAGACCTGCTGGGGCGGATTTTATCCAGCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTg > 2:92430/1‑100 (MQ=255) gagAAATCACCGGGGTATTTACTTCAGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGAc < 1:3867823/98‑1 (MQ=255) gCGAAATCACCGGGGAATTTACTTCAGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGTATTGATAAGTAACCGAGCTTACGAAGCCGCATTCTGAc > 1:248974/1‑100 (MQ=255) gAAATCACCGGGGAATTTACTTCAGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACTg < 2:1639656/100‑1 (MQ=255) gAAATCACCGGGGAATTTACTTCAGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACTg < 2:1526750/100‑1 (MQ=255) aaaTCACCGGTGAATTTACTTCAGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACTGt < 1:3736740/100‑1 (MQ=255) aaaTCACCGGGGAATTTACTTCAGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACTGt > 2:2931510/1‑100 (MQ=255) cACCGGGGAATTTACTTCAGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACTGTCAG‑a > 2:3847167/1‑100 (MQ=255) cACCGGGGAATTTACTTCAGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACTGTCAG‑a > 2:2316204/1‑100 (MQ=255) aCCGGGGAATTTACTTCAGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACTGTAAG‑At > 1:1728180/1‑100 (MQ=255) ccGGGGAATTTACTTCAGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACTGTCAG‑At > 2:782241/1‑99 (MQ=255) ccGGGGAATTTACTTCAGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACTGTCAG‑ATg > 2:101026/1‑100 (MQ=255) ggggAATTTACTTCAGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACTGTCAG‑ATGCg < 1:1951896/100‑1 (MQ=255) gggAATTTACTTCAGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCA‑TCTGACAGTCAGAATGCgg < 1:3068317/100‑1 (MQ=38) gggAATTTACTTCAGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCA‑TCTGACAGTCAGAATGCgg < 1:2233479/100‑1 (MQ=38) ggAATTTACTTCAGACGACCTGCTGGGTCGTATTTTCTCCAGCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCA‑TCTGACAGTCAGAATGCGgc < 1:396282/100‑1 (MQ=37) ggAATTTACTTCAGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCA‑TCTGACAGTCAGAATGCGgc < 2:2186982/100‑1 (MQ=38) ggAATTTACTTCAGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCA‑TCTGACAGTCAGAATGCGgc < 1:3506462/100‑1 (MQ=38) gAATTTACTTCAGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACTGTCAG‑ATGCGgct > 1:1840048/1‑100 (MQ=255) gAATTTACTTCAGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCA‑TCTGACAGCCAGAATGCGgct < 1:2582427/100‑1 (MQ=38) gAAGTTACTTCAGACCACCTGCTGGGGCGGATTTTCTCCGGCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCA‑TCTGACAGTCAGAATGCGgc < 2:1115530/99‑1 (MQ=37) aaTTTACTTCAGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCA‑TCTGACAGTCAGAATGCGgctt < 1:664733/100‑1 (MQ=38) aaTTCACTTCAGACGATCTGCTGGGGCGAATTTTCTCCAGCTTCTGTATTGGTAAGTAACCGCGCTTACGAATCCGCA‑TCTGACAGTCAGAATGCGgc < 2:539371/98‑1 (MQ=37) tttACTTCAGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACTGTCAG‑ATGCGgcttcg < 2:1902161/100‑1 (MQ=255) ttACTTCAGATGACCTGCTGGTGCGGATTTTCTCCAGCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCA‑TCTGACAGTCAGAATGCGgcttcgt < 1:1867085/100‑2 (MQ=25) tACTTCAGACGACCTGCTGGGGCGGATTTTTTCCATCTTTTTTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACTGTCAG‑ATGCGgcttcgct < 1:458201/100‑1 (MQ=255) tACTTCAGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACTGTCAG‑ATGCGgcttcgct < 1:2931536/100‑1 (MQ=255) aCTTCAGACGACCTGCTGGGGCGGATTTTCTCCAGCTTTTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACTGTCAG‑ATGCGgcttcgctt < 1:2152256/100‑1 (MQ=255) cTTCAGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACTGTCGG‑ATGCGgcttcgcttc > 1:3363077/1‑100 (MQ=255) cTTCAGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACTGTCAG‑ATGCGgcttcgcttc > 1:1936560/1‑100 (MQ=255) cTTCAGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACTGTCAG‑ATGCGgcttcgcttc > 2:1803406/1‑100 (MQ=255) cTTCAGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACTATCAG‑ATGCGgcttcgcttc > 2:2452407/1‑100 (MQ=255) ttCAGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACTGTCAG‑ATGCGGCTTCGCTTCa < 1:2115817/100‑1 (MQ=255) ttCAGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACTGTCAG‑ATGCGGCTTCGCTTCa < 2:619356/100‑1 (MQ=255) ttCAGACGACCTGCTGGGGCGGAATTTCTCCAGCTTCTGTATTGGTAAGTAACCGAGCTTACGAAGCCGCATGCTGACTGTCAG‑ATGCGGCTTCGCTTCa > 2:3141351/1‑100 (MQ=255) cAGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACTGTCAG‑ATGCGGCTTCGCTTCAtt > 1:3241626/1‑100 (MQ=255) aGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACTGTCAG‑ATGCGGCTTCGCTTCATTg < 1:2843723/100‑1 (MQ=255) cgacCTGCTGGGGCGGATTTTCTCCAGCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACTGTCAG‑ATGCGGCTTCGCTTCATTGTTa < 2:1114733/100‑1 (MQ=255) acCTGCTGGGGCGGATTTTCTCCAGCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACTGTCAG‑ATGCGGCTTCGCTTCATTGTTAcc < 2:1936544/100‑1 (MQ=255) ccTGCTGGGGCGGATTTTCTCCAGCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACTGTCAG‑ATGCGGCTTCGCTTCATTGTTAcc < 1:2901863/99‑1 (MQ=255) ccTGCTGGGGCGGATTTTCTCCAGCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACTGTCAG‑ATGCGGCTTCGCTTCATTGTTACCa > 2:1786050/1‑100 (MQ=255) ccTGCTGGGGCGGATTTTCTCCAGCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACTGTCAG‑ATGCGGCTTCGCTTCATTGTTACCa > 1:2283822/1‑100 (MQ=255) ccTGCTGGGGCGGATTTTCTCCAGCTGCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACTGTCAG‑ATGCGGCTTCGCTTCATTGTTACCa > 1:2387595/1‑100 (MQ=255) tgGGGCGGATTTTCTCCAGCTTCCGAATTGGTACGTAACCGCGCTTACGAAGCCGCATTCTGACTGTCAG‑GTGCGGCTCCGCTTCATTGTTACCACTCCt > 2:2356186/1‑100 (MQ=255) ggggCGGATTTTCTCCAGCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACTGTCAG‑ATGCGGCTTCGCTTCATTGTTACCACTCCTg > 2:1942290/1‑100 (MQ=255) ggCGGATTTTCTCCAGCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACTGTCAG‑ATGCGGCTTCGCTTCATTGTTACCACTCCTGtt > 2:1599202/1‑100 (MQ=255) ggCGGATTTTCTCCAGCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACTGTCAG‑ATGCGGCTTCGCTTCATTGTTACCACTCCTGtt < 2:1167362/100‑1 (MQ=255) gCGGATTTTCTCCAGCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACTGTCAG‑ATGCGGCTTCGCTTCATTGTTACCACTCCTGTTa > 2:2430929/1‑100 (MQ=255) cGGATTTTCTCCAGCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACTGTCAG‑ATGCGGCTTCGCTTCATTGTTACCACTCCTGTTAt > 2:482638/1‑100 (MQ=255) cGGATTTTCTCCAGCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACTGTCAG‑ATGCGGCTTCGCTTCATTGTTACCACTCCTGTTAt > 1:623541/1‑100 (MQ=255) cGGATTTTCTCCAGCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACTGTCAG‑ATGCGGCTTCGCTTCATTGTTACCACTCCTGTTAt > 2:2773764/1‑100 (MQ=255) cGGATTTTCTCCAGCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACTGTCAG‑ATGCGGCTTCGCTTCATTGTTACCACTCCTGTTAt < 2:3265186/100‑1 (MQ=255) aTTTTCTCCAGCTTCTGTATTGGTAAGTAATCGCGCTTACGAAGCCGCATTCTGACTGTCAG‑ATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTcc < 1:1758217/100‑1 (MQ=255) aTTTTCTCCAGCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACTGTCAG‑ATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTcc > 1:3911156/1‑100 (MQ=255) aTTTTCTCCAGCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACTGTCAG‑ATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTcc < 2:361362/100‑1 (MQ=255) ttCTCCAGCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACTGTCAG‑ATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCa < 2:2155098/100‑1 (MQ=255) ctctcCAGCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACTGTCAG‑ATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCa < 2:1843630/99‑1 (MQ=255) ctcCAGCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACTGTCAG‑ATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAAc < 1:2809632/100‑1 (MQ=255) ctcCAGCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACTGTCAG‑ATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAAc > 2:3830370/1‑100 (MQ=255) catcTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACTGTCAG‑ATGCGGCTTCGCTTCATTGTTACCTCTCCTGTTATTCCTCAAc < 2:1332129/94‑1 (MQ=255) tGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACTGTCAG‑ATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCCTTT‑TTTTa > 2:853907/1‑100 (MQ=255) aTTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACTGTCTG‑ATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCCTTT‑TTTTAAAc < 2:2742269/100‑1 (MQ=255) aTTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACTGTCAG‑ATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCCTTT‑TTTTAAAc < 2:3496974/100‑1 (MQ=255) aTTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACTGTCAG‑ATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCCTTT‑TTTTAAAc > 1:1577788/1‑100 (MQ=255) ttGGTAAGTAACCGCGGTTACGAAGCCTCATTCTGACTGTCAG‑ATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCATCCCTTT‑TTTTAAAc < 2:3361580/99‑1 (MQ=255) ttGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACTGTCAG‑ATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCCTTT‑TTTTAAACa > 2:363415/1‑100 (MQ=255) ggTAAGTAACCGCGCTTACGAAGCCGCATTCTGACTGTCAG‑ATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCCTTT‑TTTTAAACAtt > 1:282009/1‑100 (MQ=255) ggTAAGTAACCGCGCTTACGAAGCCGCATTCTGACTGTCAG‑ATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCCTTT‑TTTTAAACAtt > 2:1738988/1‑100 (MQ=255) gtaagtaaCCGCGCTTACGAAGCCGCATTCTGACTGTCAG‑ATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCCTTT‑TTTTAAACATTa > 1:130816/1‑100 (MQ=255) gtaaCCGCGCTTACGAAGCCGGATTCTGACTGTCAG‑ATGCGGCTTCGCTTTATTGTTACCACTCCTGTTATTCCTCAACCCTTT‑TTTTAAACATTAAAAt < 2:2339913/100‑1 (MQ=255) taaCCGCGCTTACGAAGCCGCATTCTGACTGTCAG‑ATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTAAACCCTTT‑TTTTAAACATTAAAAtt > 1:1058170/1‑100 (MQ=255) taaCCGCGCTTACGAAGCCACATTCTGACAGTCAG‑ATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCCTTT‑TTTTAAACATTAAAAtt > 2:907382/1‑100 (MQ=255) aaCCGTGCTTACGAAGCCGCATTCTGACTGTCAG‑ATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCCTTT‑TTTTAAACATTAAAATTc < 1:856117/100‑1 (MQ=255) ccGCGCTTACGAAGCCGCATTCTGACTGTCAG‑ATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCCTTT‑TTTTAAACATTTAAATTCt > 2:1232056/1‑99 (MQ=255) cgcgCTTACGAAGCCGCATTCTGACTGTCAG‑CTGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCCTTT‑TTTTAAACATTAAAATTCTTa > 1:1199902/1‑100 (MQ=255) gcgcTTACGAAGCCGCATTCTGACTGTCAG‑ATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCCTTT‑TTTTAAACATTAAAATTCTTa < 2:827291/99‑1 (MQ=255) gcgcTTACGAAGCCGCATTCTGACTGTCAG‑ATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCCTTT‑TTTTAAACATTAAAATTCTTAc < 2:2943804/100‑1 (MQ=255) cgcTTACGAAGCCGCATTCTGACTGTCAG‑ATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCCTTT‑TTTTAAACATTAAAATTCTTACg < 1:545610/100‑1 (MQ=255) cTTACGAAGCCGCATTCTGACTGTCAG‑ATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCCTTT‑TTTTAAACATTAAAATTCTTACGTa > 1:754826/1‑100 (MQ=255) ttATGATGCCGCATTCTGACTGTCAA‑ATGCGGCTTCGCTTGATTGTTACCTCTCCTGTTATTAATTAACCCTTT‑TTTTAAAGATGAATATACTTACg < 2:3736567/97‑1 (MQ=255) aagcGAAGCCGCA‑TCTGACAGTCAGAATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCCTTT‑TTTTAAACATTAAAATTCTTACGTaa > 1:2444461/4‑100 (MQ=37) tACGAAGCCGCATTCTGACTGTCAG‑ATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCCTTT‑TTTTAAACATTAAAATTCTTACGTAAt > 1:3755482/1‑100 (MQ=255) tACGAAGCCGCATTCTGACTGTCAG‑ATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCCTTT‑TTTTAAACATTAAAATTCTTACGTAAt > 2:609427/1‑100 (MQ=255) tACGAAGCCGCATTCTGACTGTAAG‑ATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCCTTTATTTTAAACATTAAAATTCTTACGTa > 2:3008303/1‑99 (MQ=255) agcGAAGCCGCA‑TCTGACAGTCAGAATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCCTTT‑TTTTAAACATTAAAATTCTTACGTAAt > 1:1223715/3‑100 (MQ=37) cGAAGCCGCA‑TCTGACAGTCAGAATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCCTTT‑TTTTAAACATTAAAATTCTTACGTAAttt > 1:569808/1‑100 (MQ=37) gAAGCCGCATTCTGACTGTCAG‑ATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCCTTT‑TTTTAAACATTAAAATTCTTACGTAATTta < 1:2730811/100‑1 (MQ=255) gAAGCCGCATTCTGACTGTCAG‑ATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCCTTT‑TTTTAAACATTAAAATTCTTACGTAATTta > 1:800505/1‑100 (MQ=255) gAAGCCGCATCCTGACTGTCAG‑ATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCATTC‑TTTTAAACATTAAAATTCTTACGTAATTta < 2:2569236/100‑1 (MQ=255) gAAGCCGCA‑TCTGACAGTCAGAATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTTCTCAACCCTTT‑TTTTAAACATTAAAATTCTTACGTAATTta > 1:1058335/1‑100 (MQ=37) gAAGCCGCA‑TCTGACAGTCAGAATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCCTTT‑TTTTAAACATTAAAATTCTTACGTAATTta > 1:1467840/1‑100 (MQ=38) gAAGCCGCA‑TCTGACAGTCAGAATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCCTTT‑TTTTAAACATTAAAATTCTTACGTAATTta > 1:1262071/1‑100 (MQ=38) gAAGCCGCA‑TCTGACAGTCAGAATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCCTTT‑TTTTAAACATTAAAATTCTTACGTAATTta > 2:2203782/1‑100 (MQ=38) gCCGCA‑TCTGACAGTCAGAATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCCTTT‑TTTTAAACATTAAAATTCTTACGTAATTTATaa > 1:3333425/1‑100 (MQ=38) gCCGCA‑TCTGACAGTCAGAATGCGGCTTCGCTTAATTGTTACCACTCCTGTTATTCCTCAACCCTTT‑TTTTAAACTTTAAAATTCTTACGTAATTTATaa > 2:3744938/1‑100 (MQ=37) cacATTCTGACTGTCAG‑ATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCCTTT‑TTTTAAACATTAAAATTCTTACGTAATTTATAAt > 2:1399935/3‑99 (MQ=255) gtaTTCTGACTGTCAG‑ATGCTGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAATCCATT‑TTTTAAACATTAAAATTCTTACGTAATTTATAATCt < 2:3810075/98‑1 (MQ=255) ttCTGACTGTCAG‑ATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCCTTT‑TTTTAAACATTAAAATTCTTACGTAATTTATAATCTTTa < 1:1098807/100‑1 (MQ=255) | ACTTAAGCGAAATCACCGGGGAATTTACTTCAGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACTGTCAG‑ATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCCTTT‑TTTTAAACATTAAAATTCTTACGTAATTTATAATCTTTA > NC_000913/3888113‑3888311 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |