Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 4,520,500 Δ1 bp 16.6% intergenic (‑176/+171) yjhU ← / ← yjhF putative DNA‑binding transcriptional regulator; KpLE2 phage‑like element/putative transporter

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,520,5000A.16.6% 501.2 / 100.0 181intergenic (‑176/+171)yjhU/yjhFputative DNA‑binding transcriptional regulator; KpLE2 phage‑like element/putative transporter
Reads supporting (aligned to +/- strand):  ref base A (79/71);  new base . (20/10);  total (99/82)
Fisher's exact test for biased strand distribution p-value = 2.27e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.11e-02

Only 100 of 186 total aligned reads displayed.

GGCATGATTTTATACAGATATTTTATTCTTTTACATGAAATAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGACATGCTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAATATCGCCCCTTTTTGATCGCCAGCGATTCGTCACCGTG  >  NC_000913/4520402‑4520598
                                                                                                  |                                                                                                   
ggCATGATTTTATACAGATATTTTATTCTTTTACATGAAATAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGAc                                                                                                    >  2:633002/1‑100 (MQ=255)
 gCATGATTTTATACAGATATTTTATTCTTTTACATGAAATAAACCAGCATTCCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGACa                                                                                                   <  1:2368039/100‑1 (MQ=255)
 gCATGATTTTATACAGATATTTTATTCTTTTACATGAAATAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGAc                                                                                                    <  2:893203/99‑1 (MQ=255)
 gCATGATTTTATACAGATATTTTATTCTTTTACATGAAATAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGACa                                                                                                   >  2:142074/1‑100 (MQ=255)
  cATGATTTTATACAGATATTTTATTCTTTTACATGAAATAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGACAt                                                                                                  >  1:3747303/1‑100 (MQ=255)
  cATGATTTTATACAGATATTTTATTCTTTTACATGAAATAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGACAt                                                                                                  >  1:3804160/1‑100 (MQ=255)
  cATGATTTTATACAGATATTTTATTCTTTTACATGAAATAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGACAt                                                                                                  >  1:2923511/1‑100 (MQ=255)
   aTGATTTTATACAGATATTTTATTCTTTTACATGAAATAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGACATg                                                                                                 <  2:3635218/100‑1 (MQ=255)
   aTGATTTTATACAGATATTTTATTCTTTTACATGAAATAAACCAGCATACCATTTGAGCGATCGCCCGATGTTCCCCCATACTGTAAAGCCGGAGACATg                                                                                                 >  2:2685340/1‑100 (MQ=255)
    tGATTTTATACAGATATTTTATTCTTTTACATGAAATAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGACATGc                                                                                               <  2:3538008/100‑1 (MQ=255)
      aTTTTATACAGATATTTTATTCTTTTACATGAAATAAACCAGCATACCATTTGAACGATAAACCGCTATTCACCCATACTGTAAAGCCGGAGACATg                                                                                                 >  1:39578/1‑97 (MQ=255)
       ttttATTCAGATATTTTATTCTTTTACATGAAATAAACCATCATACCATTTGAGCGATTTCCCGCTGTTCCCCCATATTGTAAAGCCGGAGACATGCTcc                                                                                            <  2:795530/100‑1 (MQ=255)
          tataCAGATATTTTATTCTTTTACATGAAATAAACCAGCATACCATTTGAGCGATCGCCCGCTTTTCCCCCATACTTTAAAGCCGGAGACATGCTCCGGc                                                                                         <  2:1274756/100‑1 (MQ=255)
           ataCAGATATTTTATTCTTTTACATGAAATAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGCATGTCTCCGGCt                                                                                        <  2:3233436/100‑1 (MQ=38)
           ataCAGATATTTTATTCTTTTACATGAAATAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGCATGTCTCCGGCt                                                                                        <  1:1597398/100‑1 (MQ=38)
            taCAGATATTTTATTCTTTTACATGAGATAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGACATGCTCCGGCtt                                                                                       <  2:2207744/100‑1 (MQ=255)
            taCAGATATTTTATTCTTTTACATGAAATAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGACATGCTCCGGCtt                                                                                       <  1:187686/100‑1 (MQ=255)
            taCAGATATTTTATTCTTTTACATGAAATAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGACATGCTCCGGCtt                                                                                       <  1:1445587/100‑1 (MQ=255)
            taCAGATATTTTATTCTTTTACATGAAATAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGCATGTCTCCGGCtt                                                                                       <  1:1590187/100‑1 (MQ=38)
            taCAGATATTTTATTCTTTTACATGAAATAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGCATGTCTCCGGCtt                                                                                       <  1:2487612/100‑1 (MQ=38)
            taCAGATATTTTATTCTTTTACATGAAATAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGCATGTCTCCGGCt                                                                                        <  1:1719914/99‑1 (MQ=38)
             aCAGATATTTTATTCTTTTACATGAAATAAACCAGCATACCATTTGAGCTATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGACATGCTCCGGCtt                                                                                       <  2:689323/99‑1 (MQ=255)
             aCAGATATTTTATTCTTTTACATGAAATAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGACATGCTCCGGCttt                                                                                      <  2:3677014/100‑1 (MQ=255)
             aCAGATATTTTATTCTTTTACATGAAATAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGCATGTCTCCGGCttt                                                                                      <  1:2624208/100‑1 (MQ=38)
              cAGATATTTTATTCTTTTACATGAAATAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGACATGCTCCGGCTTTa                                                                                     >  1:2194938/1‑100 (MQ=255)
               aGATATTTTATTCTTTTACATGAAATAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGACATGCTCCGGCTTTAc                                                                                    <  1:633009/100‑1 (MQ=255)
               aGATATTTTATTCTTTTACATGAAATAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGACATGCTCCGGCTTTAc                                                                                    <  2:1114481/100‑1 (MQ=255)
               aGATATTTTATTCTTTTACATGAAATAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGACATGCTCCGGCTTTAc                                                                                    >  2:25537/1‑100 (MQ=255)
               aGATATTTTATTCTTTTACATGAAATAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGACATGCTCCGGCTTTAc                                                                                    <  2:3150439/100‑1 (MQ=255)
               aGATATTTTATTCTTTTACATGAAATAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCAATACTGTAAAGCCGGAGACATGCTCCGGCTTTAc                                                                                    >  2:1731291/1‑100 (MQ=255)
               aGATATTTTATTCTTTTACATGAAATAAACCAGCATACAATTTGAGCGACCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGACATGCTCCGGCTTTAc                                                                                    >  2:1345516/1‑100 (MQ=255)
                gATATTTTATTCTTTTACATTAAATAAACCAGCATATCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGCATGTCTCCGGCttt                                                                                      <  1:1671561/97‑1 (MQ=37)
                gATATTTTATTCTTTTACATGAAATAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCGCCATACTGTAAAGCCGGAGCATGTCTCCGGCTTTAcn                                                                                   <  2:3453174/100‑2 (MQ=37)
                gATATTTTATTCTTTTACATGAAATAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGACATGCTCCGGCTTTACa                                                                                   <  1:86839/100‑1 (MQ=255)
                   atTTTATTCTTTTACATGAAATAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGACATGCTCCGGCTTTACAGt                                                                                 >  2:1996788/1‑99 (MQ=255)
                       tATTCTTTTACATGAAATAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGACATGCTCCGGCTTTACAGTATTAc                                                                            <  1:3840136/100‑1 (MQ=255)
                       tATTCTTTTACATAAAATAAACCAGCATACCATTTGACCGATCGCCCGCTGTTCCCGCATACTGTAAAGCCGGAGACATGATCCGGCTTTACAGCAtt                                                                              >  2:3118516/1‑98 (MQ=255)
                           cTTTTACATGAAATAAACCTGCATACCATTAGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGACATGCTCCGGCTTTAAAGTAtt                                                                              >  2:1677529/1‑94 (MQ=255)
                           cTTTTACATGAAATAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGACATGCTCCGGCTTTACAGTATTACTgag                                                                        >  2:386471/1‑100 (MQ=255)
                            ttttACATGAAATAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGACATGCTCCGGCTTTACAGTATTACTgaga                                                                       >  2:3011898/1‑100 (MQ=255)
                              ttAGATTAAATAAACCAGCATACCATTTGAGCGATTGCCCGCGGTTTCCCCATACTGTAAAGCCTGAGACATTCTCCGGCTTTACAGTATTACTGAGAAt                                                                     <  2:1039184/100‑1 (MQ=255)
                                 cATGAAATAAACCAGCATACCATTTGAGCGATCGTCCGCTGTTCTCCCATACTGTAAAGCCGGAGACATGCTCCGGCTTTACAGTATTACTGAGAATaca                                                                  <  1:1005129/100‑1 (MQ=255)
                                  aTGAAATAAACCAGCATACCATTTGTGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGACATGCTCCGGCTTTACAGTATTACTGAGAATacac                                                                 <  1:989233/100‑1 (MQ=255)
                                  aTGAAATAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGACATGCTCCGGCTTTACAGTATTACTGAGAATacac                                                                 >  2:1193016/1‑100 (MQ=255)
                                  aTGAAATAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGACATGCTCCGGCTTTACAGTATTACTGAGAATacac                                                                 >  1:3267446/1‑100 (MQ=255)
                                  aTGAAATAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGACATGCTCCGGCTTTACAGTATTACTGAGAATacac                                                                 <  1:1216808/100‑1 (MQ=255)
                                   tGAAATAAACCAGCATATCATTTGAGCGTTCGCCCGTTGTTCCCCCATACTGTAAAGCCGGAGACATGCTCCGGCTTTACAGTATTACTGAGAATACAcc                                                                <  1:3325529/100‑1 (MQ=255)
                                   tGAAATAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGACATGCTCCGGCTTTACAGTATTACTGAGAATACAcc                                                                >  1:1204399/1‑100 (MQ=255)
                                   tGAAATAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGACATGCTCCGGCTTTACAGTATTACTGAGAATACAcc                                                                >  1:468938/1‑100 (MQ=255)
                                   tGAAATAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGACATGCTCCGGCTTTACAGTATTACTGAGAATACAcc                                                                <  1:245067/100‑1 (MQ=255)
                                   tGAAATAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGAAGACATGCTCCGGCTTTACAGTATTACTGAGAATACAcc                                                                >  1:3517853/1‑100 (MQ=255)
                                   tGAAATAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAACCAAAGACATGCTCCGGCTTTACAGTATTACTGAGAATACAcc                                                                >  1:1289456/1‑100 (MQ=255)
                                     aaaTAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCGTACTGTAAAGCCGGAGACATGCTCCGGCTTTACAGTATTACTGAGAATACACCCa                                                              >  2:3487984/1‑100 (MQ=255)
                                     aaaTAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGACATGCTCCGGCTTTACAGTATTACTGAGAATACAACCa                                                              >  1:1885184/1‑100 (MQ=255)
                                       aTAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGACATGCTCCGGCTTTACAGTATTACTGAGAATACACCCAt                                                             >  1:3815871/1‑99 (MQ=255)
                                        tAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGACATGCTCCGGCTTTACAGTATTACTGAGAATACACCCATCa                                                           <  2:1917906/100‑1 (MQ=255)
                                          aaCCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGACATGCTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAg                                                         >  2:2479992/1‑100 (MQ=255)
                                           aCCAGCATACCATTTGAGCGATCGCCCGCTTTTCCCCCATACTGTAAAGCCGGAGACATGCTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGc                                                        <  1:2953469/100‑1 (MQ=255)
                                                    ccATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGACATGCTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGaa                                               >  1:2143463/1‑100 (MQ=255)
                                                       tttGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGACATGCTCCTGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGt                                            <  2:1588231/100‑1 (MQ=255)
                                                         tGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGACATGCTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTc                                          <  1:1996806/100‑1 (MQ=255)
                                                          gAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGACATGCTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCa                                         <  2:468932/100‑1 (MQ=255)
                                                            gCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGACATGCTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAat                                       >  2:1728924/1‑100 (MQ=255)
                                                             cGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGACATGCTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAata                                      >  1:2377389/1‑100 (MQ=255)
                                                               aTCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGACATGCTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAATATc                                    >  2:3475813/1‑100 (MQ=255)
                                                                tCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGACATGCTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAATATCg                                   <  2:1240771/100‑1 (MQ=255)
                                                                 cGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGACATGCTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAATATCGc                                  <  1:2708347/100‑1 (MQ=255)
                                                                    ccGCTGTTCCCCCATACTGTAAAGCCGGAGACATGCTCCGGTTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAATATCGcc                                 <  1:58458/98‑1 (MQ=255)
                                                                    ccGCTGTTCCCCCATACTGTAAAGACGGAGACATGCTACGGCTTTACAGTATTACTGAGAATACAACCATTAAGCATAATAGAAGGTTCAATATAGccc                                >  2:3100872/1‑99 (MQ=255)
                                                                         gTTCCCCCATACTGTAAAGCCGGAGACATGCTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAATATCGCCCCttttt                          <  2:53288/100‑1 (MQ=255)
                                                                            cccccATACTGTAAAGCCGGAGACATGCTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAATATCGCCCCTTTTTGAt                       >  2:1501562/1‑100 (MQ=255)
                                                                            cagtaaTACTGTAAAGCCGGAGCATGTCTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAATATCGCCCCTTTTTGAt                       >  1:2775455/6‑100 (MQ=25)
                                                                              gtaaTACTGTAAAGCCGGAGCATGTCTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAATATGGCCCCTTTTTGATCg                     >  1:3874144/4‑100 (MQ=25)
                                                                              cccATACTGTAAAGCCGGAAACATGCTCCGGATTTACAGTATTACTGAGAATAAACACATCAAGCATAATCGAAGGTTCAATATCGCCCCTTTTTGATc                      >  2:1136182/1‑99 (MQ=255)
                                                                                cATACTGTAAAGCCGGAGACATGCTCCGGCTTTACAGTATTACTGAGAATACACACATCAAGCATAATCGAAGGTTCAATATCGCCCCTTTTTGATCGcc                   >  2:45054/1‑100 (MQ=255)
                                                                                 aTACTGTAAAGCCGGAGCATGTCTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAATATCGCCCCTTTTTGATCGCCa                  >  2:3628446/1‑100 (MQ=37)
                                                                                    cTGTAAAGCCGGAGCATGTCTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAATATCGCCCCTTTTTGATCgagatcg               >  1:3496230/1‑94 (MQ=37)
                                                                                    cTGTAAAGCCGGAGCATGTCTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAATATCGCCCCTTTTTGATCGCCAGCg               >  2:2841219/1‑100 (MQ=38)
                                                                                     tGTAAAGCCGGAGACATGCTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAATATCGCCCCTTTTTGATCGCCAGCGa              >  1:2544671/1‑100 (MQ=255)
                                                                                     tGTAAAGCCGGAGCATGTCTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAATATCGCCCCTTTTTGATCGCCAGCGa              >  1:2076208/1‑100 (MQ=38)
                                                                                     tGTAAAGCCGGAGCATGTCTCCGGCTTTACAGTAGTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAATATCGCCCCTTTTTGATCGCCAGCGa              >  2:3900251/1‑100 (MQ=38)
                                                                                     ngTAAAGCCGGAGCATGTCTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAATATCGACCCTATTTGATCGCCAGCGa              >  1:3238214/2‑100 (MQ=37)
                                                                                      gTAAAGCCGGAGACATGCTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAATATCGCCCCTTTTTGATCGCCAGCGAt             >  1:3106634/1‑100 (MQ=255)
                                                                                      gTAAAGCCGGAGACATGCTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAAGATAAATATCGCCCCTTTTTGATCGCCAGCGAt             >  1:3219372/1‑100 (MQ=255)
                                                                                      gTAAAGCCGGAGACATGCTCCGGCTTTACAGTATTACTGAGAATACAACCATCAAGCATAATAGAAGGTTCAATATCGCCCCTTTTTGCTTGCCAGAGAt             >  2:1745595/1‑100 (MQ=255)
                                                                                      gTAAAGCCGGAGCATGTCTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAATATCGCCCCTTTTTGATCGCCAGAGAt             >  1:1834705/1‑100 (MQ=38)
                                                                                       tAAAGCCGGAGACATGCTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAATATCGCCCCTTTTTGATCGCCAGCGAtt            >  1:191023/1‑100 (MQ=255)
                                                                                       tAAAGCCGGAGACATGCTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAATATCGCCCCTTTTTGATCGCCAGCGAtt            >  1:2896356/1‑100 (MQ=255)
                                                                                        aaaGCCGGAGACATGCTCCGGCTTTACAGTATTACTGAGACTACACACATCAAGCATAATCGAAGGTTCAATATAACCCCTTTTTGAAAGCCAgaaa              >  1:873248/1‑94 (MQ=255)
                                                                                        aaaGCCGGAGCATGTCTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAATATCGCCCCTTTTTGATCGCCAGCGATTc           >  1:1141801/1‑100 (MQ=38)
                                                                                         aaGCCGGAGACATGCTCCGGCTATACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAATATCGCCCCTTTTTGATCGCCAGCGATTCg          >  2:3821370/1‑100 (MQ=255)
                                                                                         aaGCCGGAGCATGTTTCCGGCATTACAGTATTACTGAGAATACACTCATCAAGCATAATCGAAGGTTAAATATCGCCCCTTTTTGATCGCCAACGGTTCg          >  2:74374/1‑100 (MQ=255)
                                                                                         aaGCCGGAGCATGTCTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAATATCGCCCCTTTTTGATCGCCAGCGATTCg          >  2:3666457/1‑100 (MQ=38)
                                                                                         aaGCCGGAGCATGTCTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAAAATCGCCCCTTTTTGATCGCCAGCGATTCg          >  2:2348391/1‑100 (MQ=38)
                                                                                           gCCGGAGACATGCTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAATATCGCCCCTTTTTGATCGCCAGCGATTCGTc        <  1:2997336/100‑1 (MQ=255)
                                                                                             cGGAGACATGCTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAATATCGCCCCTTTTTGATCGCCAGCGATTCGTCAc      >  1:148539/1‑100 (MQ=255)
                                                                                             cGGAGACATGCTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAATATCGCCCCTTTTTGATCGCCAGCGATTCGTCAc      >  2:3031664/1‑100 (MQ=255)
                                                                                                agaCATGCTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAATATCGCCCCTTTTTGATCGCCAGCGATTCGTCACCGt   <  1:2419955/100‑1 (MQ=255)
                                                                                                 gaCATGCTCCGTCTTTATATTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAATATCGCCCCTTTTTGATCGCCAGCGATTCGTCACCg    <  1:3558809/98‑1 (MQ=255)
                                                                                                 gaCATGCTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAATATCGCCCCTTTTTGATCGCCAGCGATTCGTCACCGTg  <  1:318697/100‑1 (MQ=255)
                                                                                                  |                                                                                                   
GGCATGATTTTATACAGATATTTTATTCTTTTACATGAAATAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGACATGCTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAATATCGCCCCTTTTTGATCGCCAGCGATTCGTCACCGTG  >  NC_000913/4520402‑4520598

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: