New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2568139 =	NA (NA)	9 (0.070)	5/164	NT	NA	noncoding (1/183 nt)	REP178 (repetitive extragenic palindromic) element; contains 4 REP sequences	REP178 (repetitive extragenic palindromic) element; contains 4 REP sequences
	?	NC_000913	2568169 =	NA (NA)					noncoding (31/183 nt)	REP178 (repetitive extragenic palindromic) element; contains 4 REP sequences	REP178 (repetitive extragenic palindromic) element; contains 4 REP sequences

CCTACGGGATTGCACATGTAGGGCGGATAAGGCGTTTACGCCGCATCCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/2568189‑2568139 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccgccCTACATGTGCAATCCCGTAGGCTGGATAAGACGCGGCAAGCGTCGCATCCGGCAATTGCACCGCGCCACTGGCGGATGCGGCGTGAACGCCTTATCCGC  >  NC_000913/2568169‑2568267                                                                                                                                                        CCTACGGGATTGCACATGTAGGGCAGATAAGGCGTTTACGCCGCATCCGCCCTACATGTGCAATCCCGTAGGCTGGATAAGACACGGCAAGCGTCGCATC                                                    >  1:1300473/1‑100             CACATGTAGGGCGGATAAGGCGTTCACGCCGCATCCGCCCTACATGTGCAATCCCGTAGGCTGGATAAGATGCGGCAAGCGTCGCATCCGGCAtttattg                                        >  2:3568050/1‑93             CACATGTAGGGCGGATAAGGCGTTCACGCCGCATCCGCCCTACATGTGCAATCCCGTAGGCTGGATAAGATGCGGCAAGCGTCGCATCCGGCAtttattg                                        >  1:2272695/1‑93             CACATGTAGGGCGGATAAGGCGTTCACGCCGCATCCGCCCTACATGTGCAATCCCGTAGGCTGGATAAGATGCGGCAAGCGTCGCATCCGGCATTTattg                                        >  1:2218087/1‑96                    AGGGCGGATAAGGCGTTTACGCCGCATCCGCCCTACATGTGCAATCCCGTAGGCTGGATAAGACGCGGCAAGCGTCGCATCCGGCAATTGCACCGCGCCA                                 >  1:3302991/1‑100                     GGGCGGATAAGGCGTTTACGCCGCATCCGCCCTACATGTGCAATCCCGTAGGCTGGATAAGACGCGGCAAGCGTCGCATCCGGCAATTGCACCGCGCCAC                                >  1:180447/1‑100                        CGGATAAGGCGTTTACGCCGCATCCGCCCTACATGTGCAATCCCGTAGGCTGGATAAGACGCGGCAAGCGTCGCATCCGGCAATTGCACCGCGCCACTGG                             >  1:1058528/1‑100                        CGGATAAGGCGTTTACGCCGCATCCGCCCTACATGTGCAATCCCGTAGGCTGGATAAGACGCGGCAAGCGTCGCATCCGGCAATTGCACCGCGCCACTGG                             >  2:1338488/1‑100                          GATAAGGCGTTTACGCCGCATCCGCCCTACATGTGCAATCCCGTAGGCTGGATAAGACGCGGCAAGCGTCGCATCCGGCAATTGCACCGCGCCACTGGCG                           >  2:2390284/1‑100                                              TCCGCCCTACATGTGCAATCCCGTAGGCTGGATAAGACGCGGCAATCGTCGCATCCGGCAATTGCACCGCGCCACTGGCGGATGCGGCGTGAACGCCTTA       <  1:1002645/100‑1                                               ctGCCCTACATGTGCAATCCCGTAGGCTGGATAAGACGCGGCAAGCGTCGCATCCGGCAATTGCACCGCGCCACTGACAGATGCGACGTGAACGCCTTAT      >  1:2662750/3‑100                                               CCGCCCTACATGTGCAATCCCGTAGGCTGGATAAGACGCGGCAAGCGTCGCATCCGGCAATTACACCGCGCCACTGACGGATGCGGCGTGAACGCCTTAT      >  1:1449057/1‑100                                               CCGCCCTACATGTGCAATCCCGTAGGCTGGATAAGAAGCGGCAAGCGTCGCATCCGGCAATTGCACCGCGCCACTGGCGGATGCGGCGTGAACGCCTTAT      >  1:2767477/1‑100                                                CGCCCTACATGTGCAATCCCGTAGGCTGGATAAGACGCGGCAAGCGTCGCATCCGGCAATTGCACCGCGCCACTGGCGGATGCGGCGTGAACGCCTTATC     >  2:2480585/1‑100                                                CGCCCTACATGTGCAATCCCGTAGGCTGGATAAGACGCGGCAAGCGTCGCATCCGGCAATTGCACCGCGCCACTGGCGGATGCGGCGTGAACGCCTTATC     >  2:2689534/1‑100                                                 GCCCTACATGTGCAATCCCGTAGGCTGGATAAGACGCGGCAAGCGTCGCATTCGGCAATTGCACCGCGCCACTGGCGGATGCGGCGTGAACGCCTTATC     <  1:1679757/99‑1                                                 GCCCTACATGTGCAATCCCGTAGGCTGGATAAGACGCGGCAAGCGTCGCATCCGGCAATTGCACCGCGCCACTGGCGGATGCGGCGTGAACGCCTTATCC    <  1:3013727/100‑1                                                   CCTACATGTGCAATCCCGTAGGCTGGATAAGACGCGGCAAGCGTCGCATCCGGCAATTGCACCGCGCCACTGGCGGATGCGGCGTGAACGCCTTATCCGC  <  1:2689558/100‑1                                                   CCTACATGTGCAATCCCGTAGGCTGGATAAGACGCGGCAAGCGTCGCATCCGGCAATTGCACCGCGCCACTGGCGGATGCGGCGTGAACGCCTTATCCGC  >  1:3503175/1‑100                                                                                                                                                        CCTACGGGATTGCACATGTAGGGCGGATAAGGCGTTTACGCCGCATCCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/2568189‑2568139 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccgccCTACATGTGCAATCCCGTAGGCTGGATAAGACGCGGCAAGCGTCGCATCCGGCAATTGCACCGCGCCACTGGCGGATGCGGCGTGAACGCCTTATCCGC  >  NC_000913/2568169‑2568267

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.