| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2842483 | NA (NA) | 10 (0.080) | 6/164 | NT | NA | noncoding (61/79 nt) | REP197 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP197 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913 | = 2842494 | NA (NA) | noncoding (72/79 nt) | REP197 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP197 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
AAAAGTGATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATGAAGGCCCGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2842378‑2842483‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccgat‑‑GCGCTGCGCTTATCGGGCCTTCATGGTTCGTGCGACATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCACTGTTACCTACTCTAAATCTTCCCCA < NC_000913/2842494‑2842396 AAAATTGATTGCCAGTAATGGGGAAGATTTAGTGTAGGTAACAGTGCCGTATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATGAAGG < 2:1271076/100‑1AAAAGTGATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATGAAGG < 1:201809/100‑1AAAAGTGATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATGAAGG < 1:2977703/100‑1 AAAGTGATTGCCAGTAATGGGGAAGATTTAGAGTATGTAACAGTGCTGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATGAAGGC < 1:2354510/100‑1 AAAGTGATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATGAAGGC < 2:2953601/100‑1 AAGTGATTGCCAGTAATGGGGAAGATTTAGAGTTGGTAACAGTTCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATGAAGGCC < 1:3079631/100‑1 AGTGTTTGCCAGTAATGTTGAAGTTTTATAGTAGGTAATAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATGAAGGCCC < 1:1690159/100‑1 AGTGATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATGAAGGCCC < 2:1660299/100‑1 AGTGATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATGAAGGCCC < 1:255995/100‑1 AGTGATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATGAAGGCCC < 2:2464849/100‑1 AGTGATTGCCAGTAATGGGGAAGATTTAGAGAAGGTAACAGTGCCAGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATGAAGGCCC > 2:1844584/1‑100 GTGATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATGAAGGCCCG < 2:3586969/100‑1 GTGATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATGAAGGCCCG < 2:155827/100‑1 GTGATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATGAAGGCCCG > 1:192612/1‑100 TGATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATGAAGGCCCGA < 1:2532623/100‑1 TGATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATGAAGGCCCGA < 1:2453410/100‑1 GAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATTCGGCCTACATGTCGCACGAACCATGAAGGCCCGAT‑‑GCGCTGCGCTTATCGG < 1:229096/100‑1 AAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATGAAGGCCCGAT‑‑GCGCTGCGCTTATCGGG < 1:273106/100‑1 AAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATGAAGGCCCGAT‑‑GCGCTGCGCTTATCGGG < 2:3106236/100‑1 AGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTTATCGTCTTATCCGGCCTACATGTCGCACGAACCATGAAGGCCCGAT‑‑GCGCTGCGCTTATCGG < 1:537689/98‑1 AGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATGAAGGCCCGAT‑‑GCGCTGCGCTTATCGGGC < 1:1207243/100‑1 AGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATGAAGGCCCGAT‑‑GCGCTGCGCTTATCGGGC < 1:3417053/100‑1 AGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATGAAGGCCCGAT‑‑GCGCTGCGCTTATCGGGC < 1:2794513/100‑1 ATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATGAAGGCCCGAT‑‑GCGCTGCGCTTATCGGGCCT < 1:806397/100‑1 AGTAGGTAACAGTGCCGGATGCGGCGTGAACGCTTTTTCTGGCCTACATGTCGTACGAACCATGAAGGCCCGAT‑‑GCGCTGCGCTTATCGGGCCTTCATGG < 1:1013877/100‑1 CATGAAGGCCCGATAAGCGCAGCGC‑‑ATCGGGCCTTCATGGTTCGTGCGACATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCACTGTTACCTACTC > 1:223847/1‑100 GCCCGAT‑‑GCGCTGCGCTTATCGGGCCTTCATGGTTCGTGCGACATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCACTGTTACCTACTCTAAATCT > 2:3820684/1‑100 CCCGAT‑‑GCGCTGCGCTTATCGGGCCTTCATGGTTCGTGCGACATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCACTGTTACCTACTCTAAATCTT < 2:2221488/100‑1 CCCGAT‑‑GCGCTGCGCTTATCGGGCCTTCATGGTTCGTGCGACATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCACTGTTACCTACTCTAAATCTT < 2:2238441/100‑1 CCGAT‑‑GCGCTGCGCTTATCGGGCCTTCATGGTTCGTGCGACATGTAGGCCGGATAAGGCGTTCACGCCGCATGCGGCACTGTTACCTACTCTAAATCTTC > 2:2932606/1‑100 CGAT‑‑GCGCTGCGCTTATCGGGCCTTCATGGTTCGTGCGACATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCACTGTTACCTACTCTAAATCTTCC < 1:2839972/100‑1 CGAT‑‑GCGCTGCGCTTATCGGGCCTTCATGGTTCGTGCGACATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCACTGTTACCTACTCTAAATCTTCC > 1:2104367/1‑100 CGAT‑‑GCGCTGCGCTTATCGGGCCTTCACGGTTTGTGCGACATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCACTGTTACCTACTCTAAATCTTCC < 2:2750931/100‑1 GAT‑‑GCGCTGCGCTTATCGGGCCTTCATGGTTCGTGCGACATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCACTGTTACCTACTCTAAATCTTCCC < 2:1246319/100‑1 T‑‑GCGCTGCGCTTATCGGGCCTTCATGGTTCGTGCGACATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCACTGTTACCTACTCTAAATCTTCCCCA < 2:809513/100‑1 T‑‑GCGCTGCGCTTATCGGGCCATCATGGTTCGTGCGCCATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCACTGTTACCTACTCTAAATCTTCCCCA > 2:689378/1‑100 AAAAGTGATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATGAAGGCCCGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2842378‑2842483‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccgat‑‑GCGCTGCGCTTATCGGGCCTTCATGGTTCGTGCGACATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCACTGTTACCTACTCTAAATCTTCCCCA < NC_000913/2842494‑2842396 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |