New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3252144	NA (NA)	11 (0.080)	7/166	NT	NA	noncoding (80/98 nt)	RIP234 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site	RIP234 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
	?	NC_000913	= 3252155	NA (NA)					noncoding (91/98 nt)	RIP234 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site	RIP234 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site

ATTAGCTAAGTGCATGTTGTTCATGTCGGATGTGGCATGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3252041‑3252144 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccagatGCGCTACGCTTATCTGGTCTGCGCGGGTTATGCAATCTATTGAATGTACAATGTTTTGTATGTCAGATAAGGCGTTCATGCCACATCCGACATGAACA  <  NC_000913/3252155‑3252058                                                                                                                                                                                                            ATTAGCTAAGTGCATGTTGTTCATGTCGGATGTGGCATGAACGCCTTAGCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACC                                                                                                        <  1:505949/100‑1   tgGCTAAGTGCATGTTGTTCATGTCGGATGTGGCATGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAG                                                                                                      <  1:3904638/98‑1   TAGCTAAGTGCATGTTGTTCATGTCGGATGTGGCATGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAG                                                                                                      <  2:774279/100‑1   TAGCTAAGTGCATGTTGTTCATGTCGGATGTGGCATGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAG                                                                                                      >  2:2943335/1‑100   TAGCTAAGTGCATGTTGTTCATGTCGGATGTGGCATGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACACGCGCAGACCA                                                                                                       >  1:3054039/1‑99    AGCTAAGTGCATGTTGTTCATGTCGGATGTGGCATGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGA                                                                                                     >  1:2627699/1‑100                    TTCATGTCGGATGTGGCATGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCATACCAGATGCGCTACGCTTATC                                                                                      <  2:797455/99‑1                      CATGTCGGATGTGGCATGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATGCGCTACGCTTATCTGG                                                                                   <  1:2808523/100‑1                      CATGTCGGATGTGGCATGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATGCGCTACGCTTATCTGG                                                                                   <  2:3583638/100‑1                       ATGTCGGATGTGGCATGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATGCGCTACGCTTATCTG                                                                                    <  2:3699139/98‑1                       ATGTCGGATGTGGCATGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGAGGCGCTACGCGTATCGGG                                                                                   <  2:3422327/99‑1                       ATGTCGGATGTGGCAAGAACGCCTGATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATGCGCTACGCTTATCTGG                                                                                   <  1:1873529/99‑1                        TGTCGGATGTGGCATGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATGCGCTACGCTTATCTGGTC                                                                                 <  2:3903553/100‑1                          TCGGATGTGGCATGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATGCGCTACGCTTATCTGGTCTG                                                                               <  2:1679852/100‑1                          TCGGATGTGGCATGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATGCGCTACGCTTATCTGGTCTG                                                                               <  1:1428715/100‑1                             GATGTGGTATGATCGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAAACCGCGCAGACCAGATGCGCTACGCTTATCTGGTCTGCGC                                                                            <  1:1662998/100‑1                                      TGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATGCGCTACGCTTATCTGGTCTGCGCGGGTTATGC                                                                   <  1:75282/100‑1                                                                                                   cccGATGCGCTACGCTTCTCTGGTCTGAGCGGGTTATACAATCTATTGAATGTACAATGTTTTGTATGTCAGATACGGCGTTCATGCCACATCCGACA        <  2:1751599/95‑1                                                                                                   CCAGATGCGCTACGCTTATCTGGTCTGCGCGGGTTATGCAATCTATTGAATGTACAATGTTTTGTATGTCAGATAAGGCGTTCATGCCACATCCGACATG      <  1:511517/100‑1                                                                                                    CAGATGCGCTACGCTTATCTGGTCTGCGCGGGTTATGCAATCTATTGAATGTACAATGTTTTGTATGTCAGATAAGGCGTTCATGCCACATCCGACATGA     <  2:2477577/100‑1                                                                                                    CAGATGCGCTACGCTTATCTGGTCTGCGCGGGTTATGCAATCTATTGAATGTACAATGTTTTGTATGTCAGATAAGGCGTTCATGCCACATCCGACATGA     <  2:1088626/100‑1                                                                                                     AGATGCGCTACGCTTATCTGGTCTGCGCGGGTTATGCAATCTATTGAATGTACAATGTTTTGTATGTCAGATAAGGCGTTCATGCCACATCCGACATGAA    <  2:1674400/100‑1                                                                                                     AGATGCGCTACGCTTATCTGGTCTGCGCGGGTTATGCAATCTATTGAATGTACAATGTTTTGTATGTCAGATAAGGCGTTCATGCCACATCCGACATGAA    <  2:3727363/100‑1                                                                                                      GATGCGCTACGCTTATCTGGTCTGCGCGGGTTATGCAATCTATTGAATGTACAATGTTTTGTATGTAAGATAAAGCGTTCATGCCACATCCGACATGAAC   >  1:738033/1‑100                                                                                                       ATGTGCTACGCTTATCTGGTCTGCGCGGGTTATGCAATCTATTGAATGTATAATGTTTTTTATGTCAGATAAGGCGTTCATGTCACATCCGACATGAACA  <  2:2518384/100‑1                                                                                                        TGCGATACGCTTATCTGGTCTGCGCGGGTTATGCAATCTATTGAATGTACAATGTTTTGTATGTCAGATAAGGCGTTCATGCCACATCCGACATGAACA  <  2:3615488/99‑1                                                                                                                                                                                                            ATTAGCTAAGTGCATGTTGTTCATGTCGGATGTGGCATGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3252041‑3252144 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccagatGCGCTACGCTTATCTGGTCTGCGCGGGTTATGCAATCTATTGAATGTACAATGTTTTGTATGTCAGATAAGGCGTTCATGCCACATCCGACATGAACA  <  NC_000913/3252155‑3252058

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.