| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3277814 | NA (NA) | 9 (0.070) | 3/162 | NT | NA | intergenic (+13/+42) | yhaV/agaR | toxin of the SohB(PrlF)‑YhaV toxin‑antitoxin system/transcriptional repressor of the aga regulon |
| ? | NC_000913 | = 3277847 | NA (NA) | noncoding (29/29 nt) | REP238 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP238 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
CTATACCGTATTCAGCAAAATGTTAAAAAGAGGACATCCTCCTGCCGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATgcccgc‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3277714‑3277814‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atGCCCGCTGGTCAACACGAATGCGTTCGGCGGGCATTGTGAACACCATCAATGGGTTTCTTCTGTTTCTCGGGTGAGGGTTTCCCAGTCGGCAGGAGGATGTCCT < NC_000913/3277847‑3277744 CTATACCGTATTCAGCAAAATGTTAAAAAGAGGACATCCTCCTGCCGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAA < 2:3548592/100‑1CTATACCGTATTCAGCAAAATGTTAAAAAGAGGACATCCTCCTGCCGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAA < 2:1640336/100‑1CTATACCGTATTCAGCAAAATGTTAAAAAGAGGACATCCTCCTGCCGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACACATTGATGGTGTTCACAA > 2:257181/1‑100 TATACCGTATTCAGCAAAATGTTAAAAAGAGGACATCCTCCTGCCGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAAT < 2:488756/100‑1 ATACCGTATTCAGCAAAATGTTAAAAAGAGGACATCCTCCTGCCGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATG < 1:468495/100‑1 TACCGTATTCAGCAAAATGTTAAAAAGAGGACATCCTCCTGCCGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGC > 2:313007/1‑100 TACCGTATTCAGCAAAATGTTAAAAAGAGGACATCCTCCTGCCGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGC < 2:2564092/100‑1 CGTATTCAGCAAAATGTTAAAAAGAGGACATCCTCCTACCGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCG > 1:1123618/1‑100 TCCTCCTGCCGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCTGGTCAACACGAATGCGTTCGGCGGGCAT < 1:3257023/100‑1 TCCTCCTGCCGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCTGGTCAACACGAATGCGTTCGGCGGGCAT < 1:1627594/100‑1 CTCCTGCCGACTGGGAAACCCTCACTCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCTGGTCAACACGAATGCGTTCGGCGGGCATTG < 1:1564002/100‑1 CTCCTGCCGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCTGGTCAACACGAATGCGTTCGGCGGGCATTG < 2:1290278/100‑1 CTCCTGCCGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCTGGTCAACACGAATGCGTTCGGCGGGCATTG < 2:3336262/100‑1 taCTGCCGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCTATTGATGGTGTTCACAATGCCCGGTGGTCAACACGAATGCGTTCGGCGGGCATTGT < 1:3729774/98‑1 TCCTGCCTACTGGTAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCTGGTCAACACGAATGCGTTCGGCGGGCATTGT < 1:978439/100‑1 TCCTGCCGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCTGGTCAACACGAATGCGTTCGGCGGGCATTGT < 2:82657/100‑1 CCTGCCGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCTGGTCAACACGAATGCGTTCGGCGGGCATTGT < 2:533420/99‑1 ATGCCCGCTGGTCAACACGAATGGGTTCGGCGGGCATTGTGATCACCATCAATGGGTTTCTTCTGTTTCTCGGGTGAGGGTTTCCCAGTCGGCAGGAGGA < 2:809215/100‑1 TGCCCGCTGGTCAACACGAATGCGTTCGGCGGGCATTGTGAACACCATCAATGGGTTTCTTCTGTTTCTCGGGTGAGGGTTTCCCAGTCGGCAGGAGGAT > 1:2931372/1‑100 TGCCCGCTGGTCAACACGAATGCGTTCGGCGGGCATTGTGAACACCATCAATGGGTTTCTTCTGTTTCTCGGGTGAGGGTTTCCCAGTCGGCAGGAGGAT > 1:1084232/1‑100 CCCGCTGGTCAACACGAATGCGTTCGGCGGGCATTGTGAACACCATCAATGGGTTTCTTCTGTTTCTCGGGTGAGGGTTTCCCAGTCGGCAGGAGGATGT > 2:2631030/1‑100 CCCGCTGGTCAACACGAATGCGTTCGGCGGGCATTGTGAACACCATCAATGGGTTTCTTCTGTTTCTCGGGTGAGGGTTTCCCAGTCGGCAGGAGGATGT > 2:2851950/1‑100 CCCGCTGGTCAACACGAATGCGTTCGGCGGGCATTGTGAACACCATCAATGGGTTTCTTCTGTTTCTCGGGTGAGGGTTTCCCAGTCGGCAGGAGGATGT > 1:1951409/1‑100 CCCGCTGGTCAACACGAATGCGTTCGGCGGGCATTGTGAACACCATCAATGGGTTTCTTCTGTTTCTCGGGTGAGGGTTTCCCAGTCGGCAGGAGGATGT > 2:3504042/1‑100 CCCGCTGGTCAACACGAATGCGTTCGGCGGGCATTGTGAACACCATCAATGGGTTTCTTCTGTTTCTCGGGTGAGGGTTTCCCAGTCGGCAGGAGGATGT < 2:1598312/100‑1 CCGCTGGTCAACACGAATGCGTTCGGCGGGCATTGTGAACACCATCAATGGGTTTCTTCTGTTTCTCGGGTGAGGGTTTCCCAGTCGGCAGGAGGATGTC > 1:1835436/1‑100 CCGCTGGTCAACACGAATGCGTTCGGCGGGCATTGTGAACACCATCAATGGGTTTCTTCTGTTTCTCGGGTGAGGGTTTCCCAGTCGGCAGGAGGATGTC > 2:3498998/1‑100 GCTGGTCAACACGAATGCGTTCGGCGGGCATTGTGAACACCATCAATGGGTTTCTTCTGTTTCTCGGGTGAGGGTTTCCCAGTCGGCAGGAGGATGTCCT < 2:3690039/100‑1 GCTGGTCAACACGAATGCGTTCGGCGGGCATTGTGAACACCATCAATGGGTTTCTTCTGTTTCTCGGGTGAGGGTTTCCCAGTCGGCAGGAGGATGTC < 2:2995219/98‑1 CTATACCGTATTCAGCAAAATGTTAAAAAGAGGACATCCTCCTGCCGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATgcccgc‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3277714‑3277814‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atGCCCGCTGGTCAACACGAATGCGTTCGGCGGGCATTGTGAACACCATCAATGGGTTTCTTCTGTTTCTCGGGTGAGGGTTTCCCAGTCGGCAGGAGGATGTCCT < NC_000913/3277847‑3277744 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |