New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 3336878 =NA (NA)9 (0.070) 6/168 NT NA intergenic (‑75/+85) ibaG/mlaB acid stress protein; putative BolA family transcriptional regulator/ABC transporter maintaining OM lipid asymmetry, cytoplasmic STAS component
?NC_000913 3336905 = NA (NA)intergenic (‑102/+58) ibaG/mlaB acid stress protein; putative BolA family transcriptional regulator/ABC transporter maintaining OM lipid asymmetry, cytoplasmic STAS component

TGATGTTCTGCCTCGTTAAATTTTTTCAGGCCGGATATGGCGTTAACCGCCTGTCCGGCAAACCTGCCTGCAAGTCGAGCCTTGTCTGATTTATCAGCGAGGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/3336981‑3336878
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aggctCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGAAAAAATTTAACGAGGCAGAACATCAGCAGGCAAATTATACAATTTCG  >  NC_000913/3336905‑3337003
                                                                                                                                                                                                           
TGATGTTCTGCCTCTTTAAATTTTTTCAGGCCGGATATGGCGTTAACCGCCTGTCCGGCAAACCTGCCTGCAAGTCGAGCCTTGTCTGATTTATCAGCGA                                                                                                         <  1:2834170/100‑1
 GATGTTCTGCCTCGTTAAATTTTTTCAGGCCGGATATGGCGTTAACCGCCTGTCCGGCAAACGTGCCTGCAAGTCGAGCCTTGTCTGATTTATCAGCGAG                                                                                                        >  2:2633438/1‑100
 GATGTTCTGCCTCGTTAAATTTTTTCAGGCCGGATATGGCGTTAACCGCCTGTCCGGCAAACCTGCCTGCAAGTCGAGCCTTGTCTGATTTATCAGCGAG                                                                                                        <  2:363276/100‑1
 GATGTTCTGCCTCGTTAAATTTTTTCAGGCCGGATATGGCGTTAACCGCCTGTCCGGCAAACCTGCCTGCAAGTCGAGCCTTGTCTGATTTATCAGCGAG                                                                                                        >  1:3706090/1‑100
  ATGTTCTGCCTCGTTAAATTTTTTCAGGCCGGATATGGCGTTAACCGCCTGTCCGGCAAACCAGCCTGGAAGTCGAGCCTTGTCTGATTTATCAGCGAGG                                                                                                       >  2:2639565/1‑100
   TGTTCTGCCTCGTTAAATTTTTTCAGGCCGGATATGGCGTTAACCGCCTGTCCGGCAAACCTGCCTGCAAGTCGAGCCTTGTCTGATTTATCAGCGAGGC                                                                                                      >  1:3804091/1‑100
   TGTTCTGCCTCGTTAAATTTTTTCAGGCCGGATATGGCGTTAACCGCCTGTCCGGCAAACCTGCCTGCAAGTCGAGCCTTGTCTGATTTATCAGCGAGGC                                                                                                      >  2:2898214/1‑100
    GTTCTGCCTCGTTAAATTTTTTCAGGCCGGATATGGCGTTAACCGCCTGTCCGGCAAACCTGCCTGCAAGTCGAGCCTTGTCTGATTTATCAGCGAGGCT                                                                                                     >  1:588111/1‑100
                                                                    TGCAAGTCGAGCCTTGTCTGATTTATCAGCGAGGCTCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGAAAAAATTTAACG                                     >  1:1985197/1‑100
                                                                      CAAGTCGAGCCTTGTCTGATTTATCAGCGAGGCTCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGAAAAAATTTAACGAG                                   >  1:2979371/1‑100
                                                                         GTCGAGCCTTGTCTGATTTATCAGCGAGGCTCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCGGACTGAAAAAATTTAACGAGGCA                                >  1:1666962/1‑100
                                                                          TCGAGCCTTGTCTGATTTATCAGCGAGGCTCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGAAAAAATTTAACGAGGCA                                >  1:2827932/1‑99
                                                                           CGAGCCTTGTCTGATTTATCAGCGAGGCTCGACTTGCAGGCAGGTTTGCCGGACAGACGGTTAACGCCATATCCGGCCTGAAAAAATTTAACGAGGCAGA                              >  1:3315938/1‑100
                                                                            GAGCCTTGTCTGATTTATCAGCGAGGCTCGACTTGCAGGCAGGTTTGCCGGACAGGCGTTTAACGCCATATCAGGCCTGAAAAAATTTAACGAGGCAGAA                             >  1:899147/1‑100
                                                                            GAGCCTTGTCTGATTTATCAGCGAGGCTCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGAAAAAATTTAACGAGGCAGAA                             >  1:3571003/1‑100
                                                                            GAGCCTTGTCTGATTTATCAGCGAGGCTCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGAAAAAATTTAACGAGGCAGAA                             >  2:2053960/1‑100
                                                                            GAGCCTTGTCTGATTTATCAGCGAGGCTCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGAAAAAATTTAACGAGGCAGAA                             >  2:2860412/1‑100
                                                                                                   AGGCTCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGAAAAAATTTAACGAGGCAGAACATCAGCAGGCAAATTATACAAT      <  2:1731308/100‑1
                                                                                                    GGCTCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGAAAAAATTTAACGAGGCAGAACATCAGCAGGCAAATTATACAATT     >  2:1073050/1‑100
                                                                                                    GGCTCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGAAAAAAATTAACGAGGCAGAACATCAGCAGGCAAATTATACAATT     >  1:3222114/1‑100
                                                                                                     gtTCGATTTGCAGGCAGGTTTGTTGGACAGGCGGTTAACGCAATATCCGGCCTGAAAAATTTAACGAGGCAGAACATCAGCAGGCAAATTATACAATTTC   <  1:1860413/98‑1
                                                                                                     GCTCGACTTGCAGGCTGGTTTGCCGGACTGGCGGTTAACGCCATATCCGGCCTGAAAAAATTTAACGAGGCAGAACATCAGCAGGCAAATTATACAATTT    <  1:388784/100‑1
                                                                                                      CTCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGAAAAAATTTAACGAGGCAGAACATCAGCAGGCAAATTATACAATTTC   >  2:845443/1‑100
                                                                                                      CTCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGAAAAAATTTAACGAGGCAGAACATCAGCAGGCAAATTATACAATTTC   >  2:956451/1‑100
                                                                                                       TCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGAAAAAATTTAACGAGGCAGAACATCAGCAGGCAAATTATACAATTTCG  <  1:1875783/100‑1
                                                                                                                                                                                                           
TGATGTTCTGCCTCGTTAAATTTTTTCAGGCCGGATATGGCGTTAACCGCCTGTCCGGCAAACCTGCCTGCAAGTCGAGCCTTGTCTGATTTATCAGCGAGGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/3336981‑3336878
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aggctCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGAAAAAATTTAACGAGGCAGAACATCAGCAGGCAAATTATACAATTTCG  >  NC_000913/3336905‑3337003

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.