| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4150413 | 127 (0.910) | 21 (0.170) | 14/160 | NT | 15.4% | intergenic (‑148/+34) | eptC/ppc | LPS heptose I phosphoethanolamine transferase/phosphoenolpyruvate carboxylase |
| ? | NC_000913 | = 4150423 | 117 (0.930) | intergenic (‑158/+24) | eptC/ppc | LPS heptose I phosphoethanolamine transferase/phosphoenolpyruvate carboxylase | |||||
ACAATTCCTTAAGGATATCTGAAGGTATATTCAGAATTTGAATAAAATGCAGACAGAAATATATTGAAAACGAGGGTGTTAGAACAGAAGTATTTCAGAAAACCCTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4150306‑4150413‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaccctcgTGCTTTTGCGCGAGGGTTTTCTGAAATACTTCTGTTCTAACACCCTCGTTTTCAATATATTTCTGTCTGCATTTTATTCAAATTCTGAATATACCTTCA < NC_000913/4150423‑4150325 ACAATTCCTTAATGATATCTGAAGGTATATTCAGAATTTGAATAAAATGCAGACAGAAATATATTGAAAACGAGGGTGTTAGAACAGAAGTATTTCAGAA < 2:305875/100‑1ACAATTCCTTAAGGATATCTGAATGTATATTTAGAATTTTAATAAAATGCAGACAGAAATATATTGAAAACGAGGGTGTTAGAACAGAAGTATTTCAGAA < 1:1123789/100‑1 CAATTCCTTAAGGATATCTGAAGGTATATTCAGAATTTGAATAAAATGCAGACAGAAATATATTGAAAACGAGGGTGTTAGAACAGAAGTATTTCAGAAA > 1:1188852/1‑100 ATTCCTTAAGGATATCTGAAGGTATATTCAGAATTTGAATAAAATGCAGACAGAAATATATTGAAAACGAGGGTGTTAGAACAGAAGTATTTCAGAAAAC < 2:2131400/100‑1 TTCCTTAAGGATATCTGAAGGTATATTTAGAATTTGTATAAAATGCAGACAGAAATATATTGAAAACGAGGGGGTTAGAACAGAAGTATTTCAGAAAA < 1:2012534/98‑1 TTCCTTAAGGATATCTGAAGGTATATTCAGAATTTGAATAAAATGCAGACAGAAATATATTGAAAACGAGGGTGTTAGAACAGAAGTATTTCAGAAAACC < 2:3562049/100‑1 TTCCTTAAGGATATCTGAAGGTATATTCAGAATTTGAATAAAATGCAGACAGAAATATATTGAAAACGAGGGTGTTAGAACAGAAGTATTTCAGAAAACC < 1:2459274/100‑1 TTCCTTAAGGATATCTGAAGGTATATTCAGAATTTGAATAAAATGCAGACAGAAATATATTGAAAACGAGGGTGTTAGAACAGAAGTATTTCAGAAAACC < 1:3576345/100‑1 CTTAAGGATATCTGAAGGTATATTCAGAATTTGAATAAAATGCAGACAGAAATATATTGAAAACGAGGGTGTTAGAACAGAAGTATTTCAGAAAACCCTC > 2:3517709/1‑100 CTTAAGGATATCTGAAGGTATATTCAGAATTTGAATAAAATGCAGACAGAAATATATTGAAAACGAGGGTGTTAGAACAGAAGTATTTCAGAAAACCCTC < 2:2998713/100‑1 CTTAAGGATATCTGAAGGTATATTCAGAATTTGAATAAAATGCAGACAGAAATATATTGAAAACGAGGGTGTTAGAACAGAAGTATTTCAGAAAACCCTC > 2:3479544/1‑100 TTAAGGATATCTGAAGGTATATTCAGAATTTGAATAAAATGCAGACAGAAATATATTGAAAACGAGGGTGTTAGAACAGAAGTATTTCTGCAAACCCTCG > 2:2934197/1‑100 AGGTATATTCAGAATTTGAATAAAATGCAGACAGAAATATATTGAAAACGAGGGTGTTAGAACAGAAGTATTTCTGCAAACCCTCGTGCTTTTGCGCGAG < 2:537440/100‑1 GTATATTCAGAATTTGAATAAAATGCAGACAGTAATATATTGAAACCGAGGGTGTTAGAACAGAAGTATTTCAGAAAACCCTCGTGCTTTTGCGCGAGG < 1:3126171/99‑1 GTATATTCAGAATTTGAATAAAATGCAGACAGAAATATATTGAAAACGAGGGTGTTAGAACAGAAGTATTTCAGAAAACCCTCGTGCTTTTGCGCGAGGG < 2:1321901/100‑1 GTATATTCAGAATTTGAATAAAATGCAGACAGAAATATATTGAAAACGAGGGTGTTAGAACAGAAGTATTTCAGAAAACCCTCGTGCTTTTGCGCGAGGG < 2:1811669/100‑1 TATATTGAGAATTTGAATAAAATGCAGACAGATATATATTTAAAACGAGGGTGTTAGAACAGAAGTATTTCAGAAAACCCTCGTGCTTTTGCGCGAGGGT < 2:3318770/100‑1 TATATTCAGAATTTTAATAAAATGCAGACAGAAATATATTGAAAACGAGGGTGTTAGAACAGAAGTATTTCAGAAAACCTTCGTGCTTTTGCGCGAGGGT < 2:3747200/100‑1 TATATTCAGAATTTGAATAAAATGCAGACAGAAATATATTGAAAACGAGGGTGTTAGAACAGAAGTATTTCAGAAAACCCTCGTGCTTTTGCGCGAGGGT < 2:1660335/100‑1 TATATTCAGAATTTGAATAAAATGCAGACAGAAATATATTGAAAACGAGGGTGTTAGAACAGAAGTATTTCAGAAAACCCTCGTGCTTTTGCGCGAGGGT < 1:1273810/100‑1 TATATTCAGAATTTGAAGAACATGCAGACAGAAATATATTGAAAACGAGGGTGTTAGAACAGAAGTATGTCAGAAAACCCTCGTGCTTTTGCGCGAGGGT < 2:3737062/100‑1 TCAGAATTTGAATAAAATGCAGACAGAAATATATTGAAAACGAGGGTGTTAGAACAGAAGTATTTCAGAAAACCCTCGTGCTTTTGCGCGAGGGTTTTCT < 1:756221/100‑1 TCAGAATTTGAATAAAATGCAGACAGAAATATATTGAAAACGAGGGTGTTAGAACAGAAGTATTTCAGAAAACCCTCGTGCTTTTGCGCGAGGGTTTTCT < 1:2670212/100‑1 TCAGAATTTGAATAAAATGCAGAAAGAAATATATTGAAACCGAGGGTGTTAGAACAGAAGTATTTCAGAAAACCCTCGTGCTTTTGCGCGAGGGTTTTCT < 2:3654436/100‑1 AGAATTTGAATAAAATGCAGACAGAAATATATTGAAAACGAGGGTGTTAGAACAGAAGTATTTCAGAAAACCCTCGTGCTTTTGCGCGAGGGTTTTCTGA < 1:3103770/100‑1 AGAATGTGAATAAAATGAAGACAGAAATAGATTGAAAACGAGGGTGATAGAACAGAAGTATTTCAGAAAACCCTCGTGCTTTTGCGCGAGGGTTTTC < 2:3083461/97‑1 TAAAATGCAGACAGAAATATATTGAAAACGATGGTGTTAGAACAGAAGTATTTCTGCAAACCCTCGTGCTTTTGCGCGAGGGTTTTCTGAAATACTTCTG < 1:2510628/100‑1 AAATGCAGACAGAAATATATTGAAAACGAGGGTGTTAGAACAGAAGTATTTCTGCAAACCCTCGTGCTTTTGCGCGAGGGTTTTCTGAAATACTTCTGTT < 1:2934223/100‑1 ATGCAGACAGAAATATATTGAAAACGAGGGTGTTAGAACAGAAGTATTTCAGAAAACCCTCGTGCTTTTGCGCGAGGGTTTTCTGAAATACTTCTGTTCT < 1:840453/100‑1 AAACGAGGGTGTTAGAACAGAAGTATTTCAGAAAACCCTCGCGCAAAAGCACGAGGGTTTTCTGAAATACTTCTGTTCTAACACCCTCGTTTTCAATATA > 2:964608/1‑100 GGGTGTTAGAACAGAAGTATTTCAGAAAACCCTCGTGCTTTTGCGCGAGGGTTTTCTGAAATACTTCTGTTCTAACACCCTCGTTTTCAATATATTTCTG < 2:1008377/100‑1 GAACAGAAGTATTTCAGAAAACCCTCGCGCAAAAGCACGAGGGTTTTCTGAAATACTTCTGTTCTAACACCCTCGTTTTCAATATATTTCTGTCTGCATT > 1:2705243/1‑100 ACAGAAGTATTTCAGAAAACCCTCGCGCAAAAGCACGAGGGTTTTCTGAAATACTTCTGTTCTAACACCCTCGTTTTCAATATATTTCTGTCTGCATTTT > 1:173568/1‑100 GAAAACCCTCGTGCTTTTGCGCGAGGGTTTTCTGAAATATTTCTGTTCTAACACCCTCGTTTTCAATATATTTCTGTCTGCATTTTATTCAAATTCTGAA < 1:1186133/100‑1 GAAAACCCTCGTGCTTTTGCGCGAGGGTTTTCTGAAATACTTCTGTTCTAACACCCTCGTTTTCAATATATTTCTGTCTGCATTTTATTCAAATTCTGAA < 1:1185784/100‑1 AAACCCTCGTGCTTTTGCGCGAGGGTTTTCTGAAATACTTCTGTTCTAACACCCTCGTTTTCAATATATTTCTGTCTGCATTTTATTCAAATTCTGAA < 1:1913022/98‑1 CCCTCGTGCTTTTGCGCGAGGGTTTTCTGAAATACTTCTGTTCTAACACCCTCGTTTTCAATATATTTCTGTCTGCATTTTATTCAAATTCTGAATATAC > 1:2876476/1‑100 CCCTCGTGCTTTTGCGCGAGGGTTTTCTGAAATACTTCTGTTCTAACACCCTCGTTTTCAATATATTTCTGTCTGCATTTTATTCAAATTCTGAATATAC > 1:1993484/1‑100 CTCGTGCTTTTGCGCGAGGGTTTTCTGAAATAATTCTGTTCTAACACCCTCGTTTTCAATATATTTCTGTCTGCATTTTATTCAAATTCTGAATATACCT < 2:2158688/100‑1 TCGTGCTTTTGCGCGAGGGTTTTCTGAGATACTTCTGTTCTAACACCCTCGTTTTCAATATATTTCTGTCTGCATTTTATTCAAATTCTGAATATACCTT < 2:1041654/100‑1 CGTGCTTTTGCGCGAGGGTTTTCTGAAATACTTCTGTTCTAACACCCTCGTTTTCAATATATTTCTGTCTGCATTTTATTCAAATTCTGAATATACCTTC > 1:3259373/1‑100 CGTGCTTTTGCGCGAGGGTTTTCTGAAATACTTCTGTTCTAACACCCTCGTTTTCAATATATTTCTGTCTGCATTTTATTCAAATTCTGAATATACCTTC < 1:1331621/100‑1 GTGCTTTTGCGCGATGGTTTTCTGAAATACTTCTTTTCTAACACCCTCGTTTTCAATATATTTCTGTCTGCATTTTATTCAAATTCTGAATATACCTTCA < 1:2634363/100‑1 GTGCTTTTGCGCGAGGGTTTTCTGAAATACTTCTGTTCTAACACCCTCGTTTTCAATATATTTCTGTCTGCATTTTATTCAAATTCTGAATATACCTTCA < 1:1906195/100‑1 GTGCTTTTGCGCGAGGGTTTTCTGAAATACTTCTGTTCTAACACCCTCGTTTTCAATATATTTCTGTCTGCATTTTATTCAAATTCTGAATATACCTTC < 2:400837/99‑1 ACAATTCCTTAAGGATATCTGAAGGTATATTCAGAATTTGAATAAAATGCAGACAGAAATATATTGAAAACGAGGGTGTTAGAACAGAAGTATTTCAGAAAACCCTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4150306‑4150413‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaccctcgTGCTTTTGCGCGAGGGTTTTCTGAAATACTTCTGTTCTAACACCCTCGTTTTCAATATATTTCTGTCTGCATTTTATTCAAATTCTGAATATACCTTCA < NC_000913/4150423‑4150325 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |