| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4285342 | NA (NA) | 20 (0.160) | 12/164 | NT | NA | noncoding (41/77 nt) | REP320 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP320 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913 | = 4285374 | NA (NA) | noncoding (73/77 nt) | REP320 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP320 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
GTTTTAATTCCCGCTCCCTTATGGGAGAAGGTTAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATgcctgat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4285244‑4285342‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCTGATAAGACGCGACAGCGTCGCATCAGGCATTGATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACATTCGGCAAGGGTTACCCGAGCGTTAACCTTCT < NC_000913/4285374‑4285269 GTTTTAATTCCCGCTCCCTTATGGGAGAAGGTTAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATG > 2:1628039/1‑100GTTTTAATTCCCGCTCCCTTATGGGAGAAGGTTAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATG < 1:618363/100‑1GTTTTAATTCCCGCTCCCTTATGGGAGAAGGTTAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATG > 2:2908347/1‑100GTTTTAATTCCCGCTCCCTTATGGGAGAAGGTTAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATG > 1:3539906/1‑100 TTTTAATTCCCGCTCCCTTATGGGAGAAGGTTAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGC > 2:449258/1‑100 TTTAATTCCCGCTCCCTTATGGGAGAAGGTTAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCC > 2:3013011/1‑100 TAATTCCCGCTCCCTTATGGGAGAAGGTTAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTG < 2:2076867/100‑1 TAATTCCCGCTCCCTTATGGGAGAAGGTTAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTG < 2:2804497/100‑1 TAATTCCCGCTCCCTTATGGGAGAAGGTTAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTG < 1:3598192/100‑1 TAATTCCCGCTCCCTTATGGGAGAAGGTTAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTG < 1:2781420/100‑1 ATTCCCGCTCCCTTATGGGAGAAGGTTAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGAT < 2:385125/100‑1 ATTCCCGCTCCCTTATGGGAGAAGGTTAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGAT > 2:1352091/1‑100 TTATGGGAGAAGGTTAACGCTCGGGTAACCCTTGTCGAATGTAGGCCGGATAAGGCGTTTACCCCGCATCCGGCAATCAATGCCTGATAAGACGCGACAG < 1:471920/100‑1 GGAGAAGGTTAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATAAGACGCGACAGCGTCG < 1:2557952/100‑1 AGGTTAACGCTCGGGTAACCCTTGCCGAATGTAGGTCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATAAGACGCGACAGCGTCGCATCA < 2:3584885/100‑1 TTAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATAAGACGCGACAGCGTCGCATCAGGC < 1:1592162/100‑1 TTAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCAGCATCCGGCAATCAATGCCTGATAAGACGCGACAGCGTCGCATCAGGC < 2:354791/100‑1 TAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTGTACGCCGCATCCGGCAATCAATGCCTGATAAGACGCGACAGCGTCGCATCAGGC < 2:1245254/99‑1 AACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATAAGACGCGACAGCGTCGCATCAGGCAT < 2:1820575/100‑1 AACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATAAGACGCGACAGCGTCGCATCAGGCAT < 1:2136860/100‑1 ACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATAAGACGCGACAGCGTCGCATCAGGCATT < 1:1761002/100‑1 ACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATAAGACGCGACAGCGTCGCATCAGGCATT < 2:2013498/100‑1 ACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATAAGACGCGACAGCGTCGCATCAGGCATT < 1:1574089/100‑1 ACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATAAGACGCGACAGCGTCGCATCAGGCATT < 1:2699035/100‑1 CGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATAAGACGCGACAGCGTCGCATCAGGCATTG < 2:2634964/100‑1 CGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATAAGACGCGACAGCGTCGCATCAGGCATTG < 2:1710507/100‑1 CGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATAAGACGCGACAGCGGCGCATCAGGCATTG < 1:615896/100‑1 CTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATAAGACGCGACAGCGTCGCATCAGGCATTGAT < 1:3602276/100‑1 CGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATAAGACGCGACAGCGTCGCATCAGGCATTGATTG < 2:191878/100‑1 AACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATAAGACGCGACAGCGTCGCATCAGGCATTGATTGCCGGA < 2:1288879/100‑1 GCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCGACAGCGTCGCATCAGGCATTGATTGCCGGATGCGGCGTAAACGCCTTA < 2:1056560/100‑1 GATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATAAGACGCGACAGCGTCGCATCAGGCATTGATTGCCGGATGTGGCGTAAACGCCTTATCCG > 2:876061/1‑100 GCCTGATAAGACGCGACAGCGTCGCATCAGGCATTGATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACATTCGGCAAGGGTTACCCGAGCGTTAA < 1:38464/100‑1 GCCTGATAAGACGCGACAGCGTCGCATCAGGCATTGATTGCCGGATGCGACGTAAACGCCTTATCCGGCCTACATTCGGCAAGGGTTACCTAAGCGTTAA > 2:2896232/1‑100 CCTGATAAGACGCGACAGCGTCGCATCAGGCATTGATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACATTCGGCAAGGGTTACCCGAGCGTTAAC > 2:2201356/1‑100 CCTGATAAGACGCGACAGCGTCGCATCAGGCATTGATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACATTCGGCAAGGGTTACCCGAGCGTTAAC > 1:3410621/1‑100 CTGATAAGACGCGACAGCGTCGCGTCAGGCATTGATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACATTCGGCAAGGGTTACCCGAGCGTTAACC < 1:2786922/100‑1 TGATAAGACGCGACAGCGTCGCATCAGGCATTGATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACATTCGGCAAGGGTTACCCGAGCGTTAACCT > 1:2796033/1‑100 TGATAAGACGCGACAGCGTCGCATCAGGCATTGATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACATTCGGCAAGGGTTACCCGAGCGTTAACCT > 1:2009011/1‑100 TGATAAGACGCGACAGCGTCGCATCAGGCATTGATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACATTCGGCAAGGGTTACCCGAGCGTTAACC < 1:1326247/99‑1 ATAAGACGCGAGAGCGTCGCATTAGGCATTGATTTCCGGATGCGGCGTAAGCGCCTTATCCGGCCTACATTCGGCAAGGGTTCCCCGAGCGTTA > 2:606903/1‑94 ATAAGACGCGACAGCGTCGCATCAGGCATTGATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACATTCGGCAAGGGTTACCCGAGCGTTAACCTTC > 1:3701594/1‑100 TAAGACGCGACAGCGTCGCATCAGGCATTGATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACATTCGGCAAGGGTTACCCGAGCGTTAACCTTCT > 2:2215855/1‑100 TAAGACGCGACAGCGTCGCATCAGGCATTGATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACATTCGGCAAGGGTTACCCGAGCGTTAACCTTCT < 2:488233/100‑1 GTTTTAATTCCCGCTCCCTTATGGGAGAAGGTTAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATgcctgat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4285244‑4285342‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCTGATAAGACGCGACAGCGTCGCATCAGGCATTGATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACATTCGGCAAGGGTTACCCGAGCGTTAACCTTCT < NC_000913/4285374‑4285269 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |