| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4386017 | NA (NA) | 14 (0.110) | 11/164 | NT | NA | coding (314/315 nt) | yjeO | inner membrane protein |
| ? | NC_000913 | = 4386039 | NA (NA) | intergenic (+21/+8) | yjeO/mscM | inner membrane protein/mechanosensitive channel protein, miniconductance | |||||
TCGCTTTGTGGCGAAAAAAACGCGGCTGGTTTATGTACGCCACCGCGCTGGCTATTTTCGGCTACTGGCTGTGGCAGTTTTTTCTGCGCTATCAGTTTTGTTTGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4385912‑4386017‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtttgtgTGCCGGATGAACCAATCCGGCTCACAAACAAAACTGATAGCGCAGAAAAAACTGCCACAGCCAGTAGCCGAAAATAGCCAGCGCGGTGGCGTACATAAA < NC_000913/4386039‑4385941 TCGCTTTGTGGCGAAAAAAACGCGGCTGGTTTATGTACGCCACCGCGCTGGCTATTTTCGGCTACTGGCTGTGGCAGTTTTTTCTGCGCTATCAGTTTTG > 1:528412/1‑100TCGCTTTGTGGCGAAAAAAACGCGGCTGGTTTATGTACGCCACCGCGCTGGCTATTTTCGGCTACTGGCTGTGGCAGTTTTTTCTGCGCTATCAGTTTTG < 1:343747/100‑1 CGCTTTGTGGCGAAAAAAACGCGGCTGGTTTATGTACGCCACCGCGCTGGCTATTTTCGGCTACTGGCTGTGGCAGTTTTTTCTGCGCTATCAGTTTTGT < 1:366421/100‑1 GCTTTGTGGCGAAAAAAACGCGGCTGGTTTATGTACGCCACCGCGCTGGCTATTTTCGGCTACTGGCTGTGGCAGTTTTTTCTGCGCTATCAGTTTTGTT < 2:3065309/100‑1 CTTTGTGGCGAAAAAAACGCGGCTGGTTTATGTACGCCACCGCGCTGGCTATTTTCGGCTACTGGCTGTGGCAGTTTTTTCTGCGCTATCAGTTTTGTTT > 2:3932938/1‑100 CTTTGTGGCGAAAAAAACGCGGCTGGTTTATGTACGCCACCGCGCTGGCTATTTTCGGCTACTGGCTGTGGCAGTTTTTTCTGCGCTATCAGTTTTGTTT < 1:3795594/100‑1 CTTTGTGGCGAAAAAAACGCGGCTGGTTTATGTACGCCACCGCGCTGGCTATTTTCAGCTACTGGCTGTGGCAGTTTTTTCTGCGCTATCAGTTTTGTTT > 2:2497705/1‑100 TGTGGCGAAAAAAACGCGGCTGGTTTATGTACGCCACCGCGCTGGCTATTTTCGGCTACTGGCTGTGGCAGTTTTTTCTGCGCTATCAGTTTTGTTTGTG < 2:355745/100‑1 TTATGTACGCCACCGCGCTGGCTATTTTCGGCTACTGGCTGTGGCAGTTTTTTCTGCGCTATCAGTTTTGTTTGTGAGCCGGATGAACCAATCCGGCTCA < 1:2879974/100‑1 TATGTACGCCACCGCGCTGGCTATTTTCGGCTACTGGCTGTGGCAGTTTTTTCTGCGCTATCAGTTTTGTTTGTGTGCCGGATGAACCAATCCGGCTCAC < 1:2692817/100‑1 TATGTACGCCACCGCGCTGGCTATTTTCGGCTACTGGCTGTGGCAGTTTTTTCTGCGCTATCAGTTTTGTTTGTGTGCCGGATGAACCAATCCGGCTCAC < 2:2428537/100‑1 ATGTACGCCACCGCGCTGGCTATTTTCGGCTACTGGCTGTGGCAGTTTTTTCTGCGCTATCAGTTTTGTTTGTGTGCCGGATGAACCAATCCGGCTCACA < 1:738209/100‑1 ATGTACGCCACCGCGCTGGCTATTTTCGGCTACTGGCTGTGGCAGTTTTTTCTGCGCTATCAGTTTTGTTTGTGTGCCGGATGAACCAATCCGGCTCACA < 1:3355230/100‑1 ATGTACGACACCGCGCTGGCTATTTTCGTCTACTGGCTGTGGCAGTTTTTTCTGCGCTATCAGTTTTGTTTGTGTGCCGGATGAACCAATCCGGCTCACA < 2:230103/100‑1 GTACGCCACCGCGCGGGCTATTTTCGGCTACTGGCTGTGGCAGTTTTTTCTGCGCTATCAGTTTTGTTTGTGAGCCGTATGAACCAATCCGGCTCACAAA < 2:323425/100‑1 TACGCCACCGCGCTGGCTATTTTCGTCTACTGGCTGTGGCAGTTTTTTCTGCGCTATCAGTTTTGTTTGTGTGCCGGATGAACCAATCCGGCTCACAAAC < 2:3575142/100‑1 CGCCACCGCGCTGGCTATTTTCGGTTACTGGCTGTGGCAGTTTTTTCTGCGCTATCAGTTTTGTTTGTGTGCCGGATGAACCAATCCGGCTCACAAACA < 1:1011994/99‑1 CGCCACCGCGCTGGCTATTTTCGGCTACTGGCTGTGGTAGTTTTTTCTGCGCTATCAGTTTTGTTTGTGTGCCGGATGAACCAATCCGGCTCACAAACAA < 1:1210216/100‑1 CGCCACCGCGCTGGCTATTTTCGGCTACTGGCTGTGGCAGTTTTTTCTGCGCTATCAGTTTTGTTTGTGTGCCGGATGAACCAATCCGGCTCACAAACAA > 1:3257328/1‑100 GCCACCGCGCTGGCTATTTTCGGCTACTGGCTGTGGCAGTTTTTTCTGCGCTATCAGTTTTGTTTGTGTGCCGGATGAACCAATCCGGCTCACAAACAAA < 2:3257296/100‑1 ACCGCGCTGGCTATTTTCGGCTACTGGCTGTGGCAGTTTTTTCTGCGCTATCAGTTTTGTTTGTGTGCCGGATGAACCAATCCGGCTCACAAACAAAACT < 2:3417849/100‑1 CTACTGGCTGTGGTAGTTTTTTTTGCGTTATTAGTTTTGTTTTTTTGCCGGATGAACCAATCCGGCTCACAAACAAAACTGATAGCGCAGAAAAAACTG < 1:1356710/99‑1 aggTTGTGTGCCGGATGAACCAATCCGGCTCACAAACAAAACTGATAGCGCAGAAAAAACTGCCACAGCCAGTAGCCGAAAATAGCCAGCGCGGTGGCG < 2:2496462/96‑1 GTTTGTGTGCCGGATGAACCAATCCGGCTCACAAACAAAACTGATAGCGCAGAAAAAACTGCCACAGCCAGTAGCCGAAAATAGCCAGCGCGGTGGCGTA < 2:2065040/100‑1 GTTTGTGTGCCGGATGAACCAATCCGGCTCACAAACAAAACTGATAGAGCAGAAAAAACTGCCACAACCAGTAGCCGAAAATAGCCAGCGCGGTG > 2:239600/1‑95 TTTGTGTGCCGGATGAACCAATCCGGCTCACAAACAAAACTGATAGCGCAGAAAAAACTGCCACAGCCAGTAGCCGAAAATAGCCAGCGCGGTGGCGTAC < 2:3602567/100‑1 TTTGTGTGCCGGATGAACCAATCCGGCTCACAAACAAAACTGATAGCGCAGAAAAAACTGCCACAGCCAGTAGCCGAAAATAGCCAGCGCGGTGGCGTAC < 2:1610866/100‑1 TTTGTGTGCCGGATGAACCAATCCGGCTCACAAACAAAACTGATAGCGCAGAAAAAACTGCCACAGCCAGTAGCCGAAAATAGCCAGCGCGGTGGCGTAC < 1:180136/100‑1 TTGTGTGCCGGATGAACCAATCCGGCTCACAAACAAAACTGATAGCGCAGAAAAAACTGCCACAGCCAGTAGCCGAAAATAGCCAGCGCGGTGGCGTACA < 1:2215724/100‑1 TTGTGTGCCGGATGAACCAAGCCGGCTCACAAACAAAACTGATAGCGCAGAAAAAACTGCCACAGCCAGTAGCCGAAAATAGCCAGCGCGGTGGCGTACA < 1:2835941/100‑1 TGTGTGCCGGATGAACCAATCCGGCTCACAAACAAAACTGATAGCGCAGAAAAAACTGCCACAGCCAGTAGCCGAAAATAGCCAGCGCGGTGGCGTACAT < 2:757034/100‑1 GTGCCGGATGAACCAATCCGGCTCACAAACAAAACTGATAGCGCAGAAAAAACTGCCACAGCCAGTAGCCGAAAATAGCCAGCGCGGTGGCGTACATAAA > 1:2284963/1‑100 TCGCTTTGTGGCGAAAAAAACGCGGCTGGTTTATGTACGCCACCGCGCTGGCTATTTTCGGCTACTGGCTGTGGCAGTTTTTTCTGCGCTATCAGTTTTGTTTGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4385912‑4386017‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtttgtgTGCCGGATGAACCAATCCGGCTCACAAACAAAACTGATAGCGCAGAAAAAACTGCCACAGCCAGTAGCCGAAAATAGCCAGCGCGGTGGCGTACATAAA < NC_000913/4386039‑4385941 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |