| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4609567 | 129 (0.920) | 17 (0.130) | 8/170 | NT | 11.6% | coding (154/1590 nt) | prfC | peptide chain release factor RF‑3 |
| ? | NC_000913 | = 4609591 | 136 (1.020) | coding (178/1590 nt) | prfC | peptide chain release factor RF‑3 | |||||
| Rejected: Frequency below cutoff threshold. | |||||||||||
ATTATTTCTCACCCGGACGCCGGTAAGACTACCATCACCGAGAAGGTGCTGCTGTTCGGACAGGCCATTCAGACCGCCGGTACAGTAAAAGGCCGTGGTTCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4609465‑4609567‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tccaTCCAGTCCGACTTAGCGTGCTGGTTGGAACCACGGCCTTTTACTGTACCGGCGGTCTGAATGGCCTGTCCGAACAGCAGCACCTTCTCGGTGATGGTA < NC_000913/4609591‑4609494 ATTATTTCTCACCCGGACGCCGGTAAGACTACCATCACCGAGAAGGTGCTGCTGTTCGGACAGGCCATTCAGACCGCCGGTACAGTAAAAGGCCGTGGTT < 1:1751619/100‑1ATTATTTCTCACCCGGACGCCGGTAAGACTACCATCACCGAGAAGGTACTGCTGTTCGGACAGGCCATTCAGACCGCCGGTACAGTAAAAGGCCGTGGTT > 1:3549832/1‑100 TATTTCTCGCCCGGACGGCGGTAAGACGACTATCACCGAGAAGGTGCTGCTGTTCGGACAGGCCATGCAGACGGCCGGTACAGTAAAAGGCCGTGGTTCC < 2:368811/100‑1 TATTTCTCACCCGGACGCCGGTAAGACTACCATCACCGAGAAGGTGCTGCTGTTCGGACAGGCCATTCAGACCGCCGGTACAGTAAAAGGCCGTGGTTCC > 1:1014752/1‑100 TATTTCTCACCCGGACGCCGGTAAGACTACCATCACCGAGAAGGTGCTGCTGTTCGGACAGGCCATTCAGACCGCCGGTACAGTAAAAGGCCGTGGTTCC > 1:2027223/1‑100 TATTTCTCACCCGGACGCCGGTAAGACTACCATCACCGAGAAGGTGCTGCTGTTCGGACAGGCCATTCAGACCGCCGGTACAGTAAAAGGCCGTGGTTCC < 2:2951256/100‑1 TATTTCTCACCCGGACGCCGGTAAGACTACAATCACCGAGAAGGTGCTGCTGTTCGGACAGGCCATTCAGACCGCCGGTACAGTAAAAGGCCGTGGTTC < 2:631615/99‑1 ATTTCTCACCCGGACGCCGGTAAGACTACCATCACCGAGAAGGTGCTGCTGTTCGGACAGGCCATTCAGACCGCCGGTACAGTAAAAGGCCGTGGTTCCA < 2:362740/100‑1 ACTACCATCACCGAGAAGGTGCTGCTGTTCGGACAGGCCATTCAGACCGCCGGTACAGTAAAAGGCCGTGGTTCCATCCAGTCCGACTTAGCGTGCTGGT < 1:3884121/100‑1 ACCATCACCGAGAAGGTGCTGCTGTTCGGACAGGCCATTCAGACCGCCGGTACAGTAAAAGGCCGTGGTTCCAACCAGTCCGACTTAGCGTGCTGGTTG < 2:651310/99‑1 CCATCACCGAGAAGGTGCTGCTGTTCGGACAGGCCATTCAGACCGCCGGTACAGTAAAAGGCCGTGGTTCCATCCAGTCCGACTTAGCGTGCTGGTTGGA < 1:11387/100‑1 CCATCACCGAGAAGGTGCTGCTGTTCGGACAGGCCATTCAGACCGCCGGTACAGTAAAAGGCCGTGGTTCCATCCAGTCCGACTTAGCGTGCTGGTTGGA < 2:873992/100‑1 CCATCACCGAGAAGGTGCTGCTGTTCGGACAGGCCATTCAGACCGCCGGTACAGTAAAAGGCCGTGGTTCCATCCAGTCCGACTTAGCGTGCTGGTTGGA < 1:2926100/100‑1 CATCACCGAGAAGGTGCTGCTGTTCGGACAGGCCATTCAGACCGCCGGTACAGTAAAAGGCCGTGGTTCCATCCAGTCCGACTTAGCGTGCTGGTTGGAA < 2:3551546/100‑1 CATCACCGAGAAGGTGCTGCTGTTCGGACAGGCCATTCAGACCGCCGGTACAGTAAAAGGCCGTGGTTCCATCCAGTCCGACTTAGCGTGCTGGTTGGAA < 2:2968388/100‑1 ATCACCGAGAAGGTGCTGCTGTTCGGACAGGCCATTCAGACCGCCGGTACAGTAAAAGGCCGTTGTTCCATCCAGTCCGACTTAGCGTGCTGGTTGGAAC < 2:863013/100‑1 ATCACCGAGAAGGTGCTGCTGTTCGGACAGGCCATTCAGACCGCCGGTACAGTAAAAGGCCGTGGTTCCATCCAGTCCGACTTAGCGTGCTGGTTGGAAC < 1:3880265/100‑1 ATCACCGAGAAGGTGCTGCTGTTCGGACAGGCCATTCAGACCGCCGGTACAGTAAAAGGCCGTGGTTCCATCCAGTCCGACTTAGCGTGCTGGTTGGAAC < 1:2769399/100‑1 TCACCGAGAAGGTGCTGCTGTTCGGACAGGCCATTCAGACCGCCGGTACAGTAAAAGGCCGTGGTTCCATCCAGTCCGACTTAGCGTGCTGGTTGGAACC < 1:1589514/100‑1 TCACCGAGAAGGTGCTGCTGTTCGGACAGGCCATTCAGACCGCCGGTACAGTAAAAGGCCGTGGTTCCATCCAGTCCGACTTAGCGTGCTGGTTGGAACC < 2:1105003/100‑1 ACCGAGAAGGTGCTGCTGTTCGGACAGGCTATTCAGACTGCCGGTACAGTAAAAGGCCGTGGTTCCATCCAGTCCGACTTAGCGTGCTGGTTGGAACCAC < 1:114937/100‑1 ACCGAGAAGGTGCTGCTGTTCGGACAGGCCATTCAGACCGCCGGTACAGTAAAAGGCCGTGGTTCCATCCAGTCCGACTTAGCGTGCTGGTTGGAACCAC < 1:3874427/100‑1 cgGAGAAGGTGCTGCTGTTCGGACAGGCCATTGAGACCGCCGTTACAGTAAAAGGTCGTGGTTCCTTCCAGTCCGACTTAGCGTGCTGGTTGGAA < 2:3616674/93‑1 CCGAGAAGGTGCTGCTGTTCGGACAGGTCATTCAGACCGCCGGTACAGTAAAAGGCCGTGGTTCCATCCAGTCCGACTTAGCGTGCTGGTTGGAACCACG < 1:784336/100‑1 CCGAGAAGGTGCTGCTGTTCGGACAGGCCATTCAGATCGCCTGTACAGTAAAAGGCCGTGGTTCCATCCAGTCCGACTTAGCGTGCTGGTTGGAACCAC < 1:3068637/99‑1 TCCATCGAGTCCGTTTTAGCGTGCTGGTTGGAACCACGCCCTTTTACTGTACCGGCGGTCTGAATGGCCTGTCCGAACAGCAGCACCTTCTCGGTGATGG < 2:2129898/100‑1 TCCATCCAGTCCGACTTAGCGTGCTGGTTGGAACCACGGCCTTTTACTGTACCGGCGGTCTGAATGGCCTGTCCGAACAGCAGCACCTTCTCGGTGATGG > 2:1306862/1‑100 TCCATCCAGTCCGACTTAGCGTGCTGGTTGGAACCACGGCCTTTTACTGTACCGGCGGTCTGAATGACCTGTCCGAACAGCAGCACCTTCTCGGTGATGG > 1:3280514/1‑100 CCATCCAGTCCGAGTTAGCGTGCTGGTTGGAACCACGGCCTTGTACTATACCGGCGGTCTGAATGGCCTGTCCGAACAGCAGCACCTTCTCGGTGATGGT > 1:2653404/1‑100 CCATCCAGTCCGACTTAGCGTGCTGGTTGGAACCACGGCCTTTTACTGTACCGGCGGTCTGAATGGCCTGTCCGAACAGCAGCACCTTCTCGGTGATGGT > 1:2584574/1‑100 CATCCAGTCCGACTTAGCGTGCTGGTTGGAACCACGGCCTTTTACTGTACCGGCGGTCTGAATGGCCTGTCCGAACAGCAGCACCTTCTCGGTGATGGTA > 1:271990/1‑100 ATTATTTCTCACCCGGACGCCGGTAAGACTACCATCACCGAGAAGGTGCTGCTGTTCGGACAGGCCATTCAGACCGCCGGTACAGTAAAAGGCCGTGGTTCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4609465‑4609567‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tccaTCCAGTCCGACTTAGCGTGCTGGTTGGAACCACGGCCTTTTACTGTACCGGCGGTCTGAATGGCCTGTCCGAACAGCAGCACCTTCTCGGTGATGGTA < NC_000913/4609591‑4609494 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |