New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 5537 =NA (NA)15 (0.150)
+CAGCGCCTGATGCGACGCTGGCGCGT		 7/126 NT NA intergenic (+7/+146) yaaX/yaaA DUF2502 family putative periplasmic protein/peroxide resistance protein, lowers intracellular iron
?NC_000913 832304 = NA (NA)noncoding (16/98 nt) RIP75 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site RIP75 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site

GCGCTGAATGCCGGATTGTTACCCGGCATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/5566‑5537
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGT  >  NC_000913/832304‑832354
                              ||||||||||||||||||||||||||                                                   
GCGCTGAATGCCGGATTGTTACCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGTTAATTCTGCAATATATTGAATCTGCATG         >  2:190755/1‑100
 CGCTGAATGCCGGATTGTTACCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGTTAATTCTGCAATATATTGAATCTGCATGC        >  1:839092/1‑100
  GCTGAATGCCGGATTGTTACCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGTTAATTCTGCAATATATTGAATCTGCATGCT       >  1:1002925/1‑100
  GCTGAATGCCGGATTGTTACCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGTTAATTCTGCAATATATTGAATCTGCATGCT       >  1:948075/1‑100
  GCTGAATGCCGGATTGTTACCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGTTAATTCTGCAATATATTGAATCTGCATGCT       >  2:1587593/1‑100
  GCTGAATGCCAGATTGTTACCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATAAGGCCTACGTTAATTCTGCAATATATTGAATCTGCATGCT       >  2:2758450/1‑100
   CTGAATGCCGGATTGTTACCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGTTAATTCTGCAATATATTGAATCTGCATGCgt      >  2:3030226/1‑98
   CTGAATGCCGGATTGTTACCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGTTAATTCTGCAATATATTGAATCTGCATGCT       >  1:1723916/1‑99
   CTGAATGCCGGATTGTTACCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGTTAATTCTGCAATATATTGAATCTGCATGCT       >  1:780443/1‑99
    TGAATGCCGGATTGTTGCCCGGCCTTCAACGCCTGATTCGACGCTGGCGCGTCTTATCAGGCCTACGTTAATTCTGCAATATATTGAATCTGCATGCTT      >  2:2532420/1‑99
     GAATGCCGGATTGTTACCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGTTAATTCTGCAATATATTGAATCTGCATGCTTTT    >  1:695374/1‑100
     GAATGCCGGATTGTTACCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGTTAATTCTGCAATATATTGAATCTGCATGCTTTT    >  2:2901030/1‑100
     GAATGCCGGATTGTTACCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGTTAATTCTGCAATATATTGAATCTGCATGCTTTT    >  2:3639746/1‑100
     GAATGCCGGATTGTTACCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGTTAATTCTGCAATATATTGAATCTGCATGCTTTT    >  2:3893674/1‑100
       ATGCCGGATTGTTACCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGTTAATTCTGCAATATATTGAATCTGCATGCTTTTGT  >  1:2430322/1‑100
                              ||||||||||||||||||||||||||                                                   
GCGCTGAATGCCGGATTGTTACCCGGCATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/5566‑5537
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGT  >  NC_000913/832304‑832354

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.