| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 72136 = | NA (NA) | 26 (0.200) | 12/164 | NT | NA | noncoding (1/85 nt) | REP7 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP7 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913 | 72169 = | NA (NA) | noncoding (34/85 nt) | REP7 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP7 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
GATTACGGGTTAGTATGCACTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGGTAGTGCGTTTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/72241‑72136‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcaggcCTACAAAACGCACTACCCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAGTGCATACTAACCCGTAATCCCCAATAGTGCCGAAGCACTCGCCTT > NC_000913/72169‑72267 GATTACGGGTTAGTATGCACTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGGTAGTGCGTTTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCA > 1:747445/1‑100GATTACGGGTTAGTATGCACTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGGTAGTGCGTTTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCA < 2:2985903/100‑1 ATTACGGGTTAGTATGCACTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGGTAGTGCGTTTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCAT < 2:2983229/100‑1 ttttGGGTTAGTATTCACTGTCGGATTCGGCGTGAACGCCTTATCCGACCTACGGGTAGTGCGTTTTGTAGGCCTGATGAGACGCGGCAAGCGTCGCATC < 1:481948/96‑1 TTACGGGTTAGTATGCACTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGGTAGTGCGTTTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATC < 2:677758/100‑1 TTACGGGTTAGTATGCACTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGGTAGTGCGTTTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCA > 2:2482915/1‑98 ACGGGTTAGTATGCACTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGGTAGTGCGTTTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAG > 1:428681/1‑100 ACGGGTTAGTATGCACTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGGTAGTGCGTTTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAG < 2:1806297/100‑1 CGGGTTAGTATGCACTGTCGGCTGCGGCGTGAACGCCTTATCCGACCTACGGGTAGTGCGTTTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGG > 1:1209763/1‑100 CGGGTTAGTATGCACTGTCGGATGCGGCGTGATCGCCTTATCCGACCTACGGGTAGTGCGTTTTTTAGTCCTGATAAGACGCGGCAAGCGTCGCATCAG < 2:201822/99‑1 CGGGTTAGTATGCACTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGGTAGTGCGTTTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGn < 2:536609/100‑2 CGGGTTAGTATGCACTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGGTAGTGCGTTTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGG < 2:2984546/100‑1 CGGGTTAGTATGCACTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGGTAGTGCGTTTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGG < 1:2474317/100‑1 GGGTTAGTATGCACTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGGTAGTGCGTTTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGC < 2:421587/100‑1 GGGTTAGTATGCACTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGGTAGTGCGTTTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGC < 2:422293/100‑1 GGGTTAGTATGCACTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGGTAGTGCGTTTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGC > 2:1513456/1‑100 GGGTTAGTATGCACTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGGTAGTGCGTTTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGC < 1:2029732/100‑1 TATCCGACCTACGGGTAGTGCGTTTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCCTAAAAAACGCACTACCCGTAGGTCGGATAAGGCGTT > 1:1469579/1‑100 TACGGGTAGTGCGTTTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGG‑‑‑‑CAACCCGCACTACCCGTAGGTCGGATAAGGCGTTCACGCCGCATCCG > 2:3856757/1‑100 GTAGTGCGTTTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGG‑‑‑‑CAACCCGCACTACCCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAGT > 1:97083/1‑100 GTTTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCCTACAAAACGCACTACCCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAGTGCA > 1:2347437/1‑100 TTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCCTACAAAACACACTACCCGTAGGTCGGATAAGGCGGTCACGCCGCATCCGACAGTGCATAC > 2:118925/1‑100 GTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCCTACAAAACGCACTACCCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAGTGCATACTA > 1:329433/1‑100 GTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCCTACAAAACGCACTACCCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAGTGCATACTA > 2:2897553/1‑100 GTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCCTACAAAACGCACTACCCGTAGGACGGATAAGGCGTTCACGCCGCATCCGACAGTGCATACTA > 1:231490/1‑100 AGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCCTACAAAACGCACTACCCGTAGGTCGGATAAGGCGTTCACGCCGCAGCCGACAGTGCATACTA > 2:1947039/1‑98 AGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCCTACAAAACGCACTACCCGTAGGTCAGATAAGGCGTTCACGCCGCATCCGACAGTGCACACTAAC > 1:1716539/1‑100 AGGCCTGATAAGACGCGGCAAGCGTATTATCAGGCCTACAAAACGCACTACCCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAGTGCATACTAAC > 2:2339083/1‑100 GGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCCTACAAAACGCACTACCCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAGTGCATACTAACC > 2:3630628/1‑100 GGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCCTACAAAACGCACTACCCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAGTGCATACTAACC > 1:1565945/1‑100 GGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCCTACAAAACGCACTACCCGTAGGTCGGATAAGGCGTTCACGCCGAATCCGACAGTGCATACTAACC > 1:3324661/1‑100 GCCTGATAAGACGCGGCAAGCGTCGCATCAGGCCTACAAAACGCACTACCCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAGTGCATACTAACCC > 2:1608392/1‑100 GCCTGATAAGACGCGGCAAGCGTCGCATCAGGCCTACAAAACGCACTACCCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAGTGCATACTAACCC > 1:2976511/1‑100 GCCTGATAAGACGCGGCAAGCGTCGCATCAGGCCTACAAAACGCACTACCCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAGTGCATACTAACCC > 1:3240892/1‑100 GCCTGATAAGACGCGGCAAGCGTCGCATCAGGCCTACAAAACGCACTACCCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAGTGCATACTAACCC > 1:8068/1‑100 GCCTGATAAGACGCGGCAAGCGTCGCATCAGGCCTACAAAACGCACTACCCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAGTGCATACTAACC > 1:3903265/1‑99 CCTGCTAAGACGCGGCAAGCGACGCATCAGGCCTACAAAACGCACTACCCGTATGTCGGATAATGCGTTCACGCAGCATCTGACAGTGCATACTAAC > 2:3066044/1‑97 CCTGATAAGACGCGGCAAGCGCCGCATCAGGCCTACAAAACGCACTACCCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAGTGCATACTAACCCG > 2:160596/1‑100 TGATAAGACGCGGCAAGCGTCGCATCAGGCCTACAAAACGCACTACCCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAGTGCATACTAACCCGTA > 2:3610114/1‑100 TGATAAGACGCGGCAAGCGTCGCATCAGGCCTACAAAACGCACTACCCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAGTGCATACTAACCCGTA > 2:3592506/1‑100 TGATAAGACGCGGCAAGCGTCGCATCAGGCCTACAAAACGCACTACCCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAGTGCATACTAACCCGTA > 2:1715581/1‑100 TGATAAGACGCGGCAAGCGTCGCATCAGGCCTACAAAACGCACTACCCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAGTGCATACTAACCCGTA > 2:1714736/1‑100 CGGCAAGCGTCGCATCAGGCCTACAAAACGCACTACCCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAGTGCATACTAACCCGTAATCCCCAATA > 1:3928119/1‑100 ctgATCAGGCCTACAAAACGCACTACCCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAGTGCATACTAACCCGTAATCCCCAATAGTGCCGAAGC < 2:2964523/97‑1 ATCAGGCCTGCAAAACGCACTACCTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAGTGCATACTAACCCGTAATCCTCAATAGTGCttcggcac < 2:36292/99‑9 TCAGGCCTACAAAACGCACTACCCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAGTGCATACTAACCCGTAATCCCCAATAGTGCCGAAGCACTC > 2:3319284/1‑100 CAGGCCTACAAAACGCACTACCCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAGTGCATACTAACCCGTAATCCCCAATAGTGCCGAAGCACTCG > 1:3625385/1‑100 CAGGCCTACAAAACGCACTACCCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAGTGCATACTAACCCGTAATCCCCAATAGTGCCGAAGCACTCG > 1:2267232/1‑100 AGGCCTACAAAACGCACTACCCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAGTGCATACTAACCCGTAATCCCCAATAGTGCCGAAGCACTCGC > 2:1958418/1‑100 GGCCTACAAAACGCACTACCCGTAGGTCGGGTAGGGCGTTCACGCCGCATCCGACAGTGCATACTAACCCGTAATCCCCAATAGTGCCGGAGCACTCGCC > 2:2579805/1‑100 GGCCTACAAAACGCACTACCCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAGTGCATACTAACCCGTAATCCCCAATAGTGCCGAAGCACTCGCC < 1:3662576/100‑1 GGCCTACAAAACGCACTACCCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAGTGCATACTAACCCGTAATCCCCAATAGTGCCGAAGCACTCGCC > 1:484149/1‑100 GGCCTACAAAACGCACTACCAGTAGGTCGGAAACGGCGTTCACGCCGCATCCGACAGTGCATACTAACACGTAATCCCCAATAGTGCCGGAGCACTCGCC > 2:2579710/1‑100 GCCTACAAAACGCACTACCCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAGTGCATACTAACCCGTAATCCCCAATAGTGCCGAAGCACTCGCCT < 2:495776/100‑1 GCCTACAAAACGCACTACCCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACACTGCATACTAACCCGTAATCCCCAATAGTGCCAAAGCACTCGCCT > 1:596296/1‑100 CCTACAAAACGCACTACCCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAGTGCATACTAACCCGTAATCCCCAATAGTGCCGAAGCACTCGCCTT > 1:362307/1‑100 GATTACGGGTTAGTATGCACTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGGTAGTGCGTTTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/72241‑72136‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcaggcCTACAAAACGCACTACCCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAGTGCATACTAACCCGTAATCCCCAATAGTGCCGAAGCACTCGCCTT > NC_000913/72169‑72267 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |