| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 279649 | NA (NA) | 13 (0.100) | 7/172 | NT | NA | noncoding (282/768 nt) | IS1 | repeat region |
| ? | NC_000913 | = 279672 | NA (NA) | noncoding (259/768 nt) | IS1 | repeat region | |||||
TCGTCCATTTCCGCGCAGACGATGACGTCACTGCCCGGCTGTATGCGCGAGGTTACCGACTGCGGCCTGAGTTTTTTAAATGGCGGAAAATCGTGTTGAGG‑C‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/279548‑279649‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gg‑cAACCGCCCGCATTATGGGCGTTGGCCTCAACACGATTTTCCGCCATTTAAAAAACTCAGGCCGCAGTCGGTAACCTCGCGCATACAGCCGGGCAGTGAC < NC_000913/279672‑279574 TCGTCCATTTCCGCGCAGACGATTACGTTACTGCCTGGCTGTATGCGCGAGGTTACCGACTGCGGCCTGAGTTTTTTAAATGGCGGAAAATCGTGTTGAG < 1:2106618/100‑1TCGTCCATTTCCGCGCAGACGATGACGTCACTGCCCGGCTGTATGCGCGAGGTTACCGACTGCGGCCTGAGTTTTTTAAATGGCGGAAAATCGTGTTGAG < 2:3212734/100‑1TCGTCCATTTCCGCGCAGACGATGACGTCACTGCCCGGCTGTATGCGCGAGGTTACCGACTGCGGCCTGAGTTTTTTAAATGGCGGAAAATCGTGTTGAG < 2:1065797/100‑1TCGTCCATTTCCGCGCAGACGATGACGTCACTGCCCGGCTGTATGCGCGAGGTTACCGACTGCGGCCTGAGTTTTTTAAATGGCGGAAAATCGTGTTGAG < 1:459258/100‑1TCGTCCATTTCCGCGCAGACGATGACGTCACTGCCCGGCTGTATGCGCGAGGTTACCGACTGCGGCCTGAGTTTTTTAAATGGCGGAAAATCGTGTTGAG < 1:347478/100‑1 CGTCCATTTCTGCGCAGACGATGACGTCACTGCCTTGCTGTATGCGCGAGGTTACCGACTGCGGCCTGAGTTTTTTAATTGGCGTAATATCGGGTTGAGG < 2:778769/100‑1 CGTCCATTTCCGCGCAGACGATGACGTCACTGCCCGGCTGTATGCGCGAGGTTACCGACTGCGGCCTGAGTTTTTTAAATGGCGGAAAATCGTGTTGAGG < 1:1305922/100‑1 CGTCCATTTCCGCGCAGACGATGACGTCACTGCCCGGCTGTATGCGCGAGGTTACCGACTGCGGCCTGAGTTTTTTAAATGGCGGAAAATCGTGTTGAGG < 2:760841/100‑1 CGTCCATTTCCGCGCAGACGATGACGTCACTGCCCGGCTGTATGCGCGAGGTTACCGACTGCGGCCTGAGTTTTTTAAATGGCGGAAAATCGTGTTGAGG > 2:2162090/1‑100 CGTCCATTTCCGCGCAGACGATGACGTCACTGCCCGGCTGTATGCGCGAGGTTACCGACTGCGGCCTGAGTTTTTTAAATGGCGGAAAATCGTGTTGAGG < 1:2824952/100‑1 CGTCCATTTCCGCGCAGACGATGACGTCACTGCCCGGCTGTATGCGCGAGGTTACCGACTGCGGCCTGAGTTTTTTAAATGGCGGAAAATCGTGTTGAGG > 1:1182301/1‑100 CGTCCATTTCCGCGCAGACGATGACGTCACTGCCCGGCTGTATGCGCGAGGTTACCGACTGCGGCCTGAGTTTTTTAAATGGCGGAAAATCGTGTTGAG > 2:1498744/1‑99 CGTCCATTTCCGCGCAGACGATGACGTCACTGCCCGGCTGTATGCGCGAGGTTACAGACTGCGGCCTGAGATTTTTAAATGGCGGAAAATCGTGTTGAGG > 2:1803706/1‑100 CGTCCATTTCCGCGCAGACGATGACGACACTGCCCGGCTGTATGCGCGAGGTTACCGACTGCGGCCTGAGATTTTTAAATGGCGGAAAATCGTGTTGAGG > 1:2385643/1‑100 GTCCATTTCCTCGCAGACGATGACGTCACTGCCCGGCTGTATGCGCGAGGTTACCGACTGCGGCCTGAGTTTTTTAAATGGCGGAAAATCGTGTTGAGG < 1:469371/99‑1 GTCCATTTCCGCGCAGACGATGACGTCACTGCCCGGCTGTATGCGCGAGGTTACCGACTGCGGCCTGAGTTTTTTAAATGGCGGAAAATCGTGTTGAGG‑C > 1:3041503/1‑100 GTCCATTTCCGCGCAGACGATGACGTCACTGCCCGGCTGTATGCGCGAGGTTACCGACTGCGGCCTGAGTTTTTTAAATGGCGGAAAATCGTGTTGAGG‑C < 2:993038/100‑1 GTCCATTTCCGCGCAGACGATGACGTCACTGCCCGGCTGTATGCGCGAGGTTACCGACTGCGGCCTGAGTTTTTTAAATGGCGGAAAATCGTGTTGAGG‑C > 2:3582882/1‑100 GTCCATTTCCGCGCAGACGATGACGTCACTGCCCGGCTGTATGCGCGAGGTTACCGACTGCGGCCTGAGATTTTTAAATGGCGGAAAATCGTGTTGAGG‑C > 1:1587367/1‑100 GTCCATTTCCGCGCAGACGATGACGTAACTGCCCGGCTGTATGTGCGAGGTTACGGACTGCGGCCTGAGTTTTTTAAATGGCGGAAAATCGTGTTGAGG < 1:700657/99‑1 TCCATTTCCGCGCAGACGATGACGTCACTGCCCGGCTGTATGCGCGTGGTTACCGACTGCGGCCTGAGTTTTTTAAATGGCGGAAAATCGTGTTGAGG > 2:2163779/1‑98 CATTTCCGCGCAGACGATGACGTCACTGCCCGGCTGTATGCGCGCGGTTACCGACTGCGGCCTGAGGTTTTTAAATGGCGGAAAATCGTGTTGAGG‑CAAa > 2:1382173/1‑99 GTCACTGCCCGGCTGTATGCGCGAGGTTACCGACTGCGGCCTGAGTTTTTTAAATGGCGGAAAATCGTGTTGAGG‑CCAACGCCCGCATTATGGGCGTTGG < 1:3705071/100‑1 TCACTGCCCGGCTGTATGCGCGAGGTTACCGACTGCGGCCTGAGTTTTTTAAATGGCGGAAGATCGTGTTGAGG‑CCAACGCCCGCATTATGGGCGTTGGC < 2:2414976/100‑1 CACTGCCCGGCTGTATGCGCGAGGTTACCGACTGCGTCCTGAGTTTTTTAAATGGCGGAAAATCGTGTTGAGG‑CCAACGCCCGCATTATGGGCGTTGGCC < 2:2117195/100‑1 CACTGCCCGGCTGTATGCGCGAGGTTACCGACTGCGGCCTGAGTTTTTTAAGTGACGTAAAATCGTGTTGAGG‑CCAACGCCCGCATTATGGGCGTTGGCC < 2:1563725/100‑1 CACTGCCCGGCTGTATGCGCGAGGTTACCGACTGCGGCCTGAGTTTTTTAAATGGCGGAAAATCGTGTTGAGG‑CCAACGCCCGCATTATGGGCGTTGGCC < 1:1442061/100‑1 ACTGCCCGGCTGTATGCGCGAGGTTACCGACTGCGGTTTGAGTTTTTTAAATGGCGGAAAATCGTGTTGAGGCCAACCGCCCGCATTATGGGCGTTGGCC < 1:56266/100‑1 ACTGCCCGGCTGTATGCGCGAAGTTACCGACTGCGGCCTGAGTTTTTTAAATGGCGGAAAATCGTGTTGAGGCCAACCGCCCGCATTATGGGCGTTGGC < 2:2282692/99‑1 CTGCCCGGCTGTATGCGCGAGGTTACCGACTGCGGCCTGAGTTTTTTAAGTGACGTAAAATCGTGTTGAGGCCAACAGCCCGCATTATGGGCGTTGGCCT < 1:3038897/100‑1 GCCCGGCTGTATGCGCGAGGTTACCTACTGCGGCCTTAGTTTTTTAAATGGCGGAAAATCGTGTTGAGG‑CAACCGCCCGCATTATGGGCGTTGGCCTCA < 2:381236/99‑1 CGGCTGTATGCGCGAGGTTACCGACTGCGGCCTGAGTTTTTTAAGTGACGTAAAATCGTGTTGAGGCCAACAGCCCGCATTATGGGCGTTGGCCTCAACA < 2:1632662/100‑1 GGCTGTATGCGCGAGGTTACCGACTGCGGCCTGAGTTTTTTAAATGGCGGAAAATCGTGTTGAGG‑CAACCGCCCGCATTATGGGCGTTGGCCTCAACAC < 1:563526/99‑1 GCTGTATGCGCGAGGTTACCGACTGCGGCCTGAGTTTTTTAAATGGCGGAAAATCGTGTTGAGG‑CAACCGCCCGCATTATGGGCGTTGGCCTCAACACGA < 1:356628/100‑1 GAGGTTACCGACTGCGGCCTGAGTTTTTTAAATGGCGGAAAATCGTGTTGAGG‑CAACCGCCCGCATTATGGGCGTTGGCCTCAACACGATTTTCCGCCAT < 1:1598341/100‑1 GG‑CAACCGCCCGCATTATGGGCGTTGGCCTCAACACGATTTTCCGCCATTTAAAAAACTCAGGCCGCAGTCGGTAACCTCGCGCATACAGCCGGGCAGTG < 1:2573890/100‑1 CAACCGCCCGCATTATGGGCGTTGGCCTCAACACGATTTTCCGCCATTTAAAAAACTCAGGCCGCAGTCGGTAACCTCGCGCATACAGCCGGGCAGTGAC > 2:3446903/1‑100 CAACCGCCCGCATTATGGGCGTTGGCCTCAACACGATTTTCCGCCATTTAAAAAACTCAGGCCGCAGTCGGTAACCTCGCGCATACAGCCGGGCAGTGAC > 1:1918464/1‑100 CAACCGCCCGCATTATGGGCGTTGGCATCAACACGATTTTCCGCCATTTAAAAAACTCAGGCCGCAGTCGGTAACCTCGCGCATACAGCCGGGCAGTGAC > 2:899183/1‑100 CAACCGCCCGCATTATGGGCGTAGGCCTCAACACGATTTTCCGCCATTTAAAAAACTCAGGCCGCAGTCGGTAACCTCGCTCATACAGCAGGGCAGT < 2:388001/97‑1 TCGTCCATTTCCGCGCAGACGATGACGTCACTGCCCGGCTGTATGCGCGAGGTTACCGACTGCGGCCTGAGTTTTTTAAATGGCGGAAAATCGTGTTGAGG‑C‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/279548‑279649‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gg‑cAACCGCCCGCATTATGGGCGTTGGCCTCAACACGATTTTCCGCCATTTAAAAAACTCAGGCCGCAGTCGGTAACCTCGCGCATACAGCCGGGCAGTGAC < NC_000913/279672‑279574 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |