| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 805859 | 91 (0.670) | 17 (0.130) | 6/172 | NT | 15.7% | noncoding (56/178 nt) | REP72 (repetitive extragenic palindromic) element; contains 4 REP sequences | REP72 (repetitive extragenic palindromic) element; contains 4 REP sequences |
| ? | NC_000913 | = 805981 | NA (NA) | noncoding (178/178 nt) | REP72 (repetitive extragenic palindromic) element; contains 4 REP sequences | REP72 (repetitive extragenic palindromic) element; contains 4 REP sequences | |||||
GTAAAAAGCGCCATGTGAATGTAGGTCGCATTCGGCACTTATTGTCGGATGCGATGCTTGCGCATCTTATCCGACCTACGAATCGCATCGAATCTGTAGgcc‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/805761‑805859‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGTTCGATGCGATTTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGCT < NC_000913/805981‑805880 GTAAAAAGCGCCATGTGAATGTAGTTCGCATTCGGCACTTATTGTCGGATGCGATGCTTGCGCATCTTATCCGACCTACGAATCGCATCGAATCTGTAGG < 2:843304/100‑1GTAAAAAGCGCCATGTGAATGTAGGTCGCATTCGGCACTTATTGTCGGATGCGATGCTTGCGCATCTTATCCGACCTACGAATCGCATCGAATCTGTAGG < 2:2708264/100‑1 TAAAAAGCGCCATGTGAATGTAGGTCGCATTCGGCACTTATTGTCGGATGCGATGCTTGCGCATCTTATCCGACCTACGAATCGCATTGAATCTGTAGGC > 2:372646/1‑100 TAAAAAGCGCCATGTGAATGTAGGTCGCATTCGGCACTTATTGTCGGATGCGATGCTTGCGCATCTTATCCGACCTACGAATCGCATCGAATCTGTAGGC > 2:1552995/1‑100 TAAAAAGCGCCATGTGAATGTAGGTCGCATTCGGCACTTATTGTCGGATGCGATGCTTGCGCATCTTATCCGACCTACGAATCGCATCGAATCTGTAGGC > 2:3632269/1‑100 AAAAAGCGCCATGTGAATGTAGGTCGCATTCGGCACTTATTGTCGGATGCGATGCTTGCGCATCTTATCCGACCTACTAATCGCATCGAATCTGTAGGCC < 2:880846/100‑1 AAAAAGCGCCATGTGAATGTAGGTCGCATTCGGCACTTATTGTCGGATGCGATGCTTGCGCATCTTATCCGACCTACGAATCGCATCGAATCTGTAGGCC < 1:905637/100‑1 AAAAAGCGCCATGTGAATGTAGGTCGCATTCGGCACTTATTGTCGGATGCGATGCTTGCGCATCTTATCCGACCTACGAATCGCATCGAATCTGTAGGCC > 2:3435682/1‑100 AAAAAGCGCCATGTGAATGTAGGTCGCATTCGGCACTTATTGTCGGATGCGATGCTTGCGCATCTTATCCGACCTACGAATCGCATCGAATCTGTAGGC > 1:2083496/1‑99 caGCATCCGGCACTTATTGTCGGATGCGATGCTTGCGCATCTTATCCGACCTACAAATCGCATCGAA‑CCGTAGGCCGGATGCGGCGTAAACGCCTTATCC < 1:3446756/98‑1 caGCATCCGGCACTTATTGTCGGATGCGATGCTTGCGCATCTTATCCGACCTACAAATCGCATCGAA‑CCGTAGGCCGGATGCGGCGTAAACGCCTTATCC < 1:501962/98‑1 caGCATCCGGCACTTATTGTCGGATGCGATGCTTGCGCATCTTATCCGACCTACAAATCGCATCGAA‑CCGTAGGCCGGATGCGGCGTAAACGCCTTATCC < 1:2184263/98‑1 caGCATCCGGCACTTATTGTCGGATGCGATGCTTGCGCATCTTATCCGACCTACAAATCGCATCGAA‑CCGTAGGCCGGATGCGGCGTAAACGCCTTATCC < 1:775191/98‑1 aGCATCCGGCACTTATTGTCGGATGCGATGCTTGCGCATCTTATCCGACCTACAAATCGCATCGAACC‑GTAGGCCGGATGCGGCGTAAACGCCTTATCCG < 2:66399/99‑1 aGCATCCGGCACTTATTGTCGGATGCGATGCTTGCGCATCTTATCCGACCTACAAATCGCATCGAA‑CCGTAGGCCGGATGCGGCGTAAACGCCTTATCCG < 1:1872929/99‑1 aGCATCCGGCACTTATTGTCGGATGCGATGCTTGCGCATCTTATCCGACCTACAAATCGCATCGAA‑CCGTAGGCCGGATGCGGCGTAAACGCCTTATCC < 1:583598/98‑1 aGCATCCGGCACTTATTGTCGGATGCGATGCTTGCGCATCTTATCCGACCTACAAATCGCATCGAA‑CCGTAGGCCGGATGCGGCGTAAACGCCTTATCC < 2:1279299/98‑1 cttctGGCACTTATTGTTGGATGCGATGCTTGCGTATCTTATCCGACCTACAAATCGCATCGAA‑CCGTAGGCCGGATGCGGCGTAAACGCCTTATCCGGC < 1:3746783/95‑1 catcCGGCACTTATTGTCGGATGCGATGCTTGCGCATCTTATCCGACCTACAAATCGCATCGAA‑CCGTAGGCCGGATGCGGCGTAAACGCCTTATCCGGC < 1:1779222/96‑1 CATCCGGCACTTATTGTCGGATGCGATGCTTGCGCATCTTATCCGACCTACAAATCGCATCGAACC‑GTAGGCCGGATGCGGCGTAAACGCCTTATCCGGC < 1:933767/100‑1 CATCCGGCACTTATTGTCGGATGCGATGCTTGCGCATCTTATCCGACCTACAAATCGCATCGAA‑CCGTAGGCCGGATGCGGCGTAAACGCCTTATCCGGa < 2:3498751/100‑2 CATCCGGCACTTATTGTCGGATGCGATGCTTGCGCATCTTATCCGACCTACAAATCGCATCGAA‑CCGTAGGCCGGATGCGGCGTAAACGCCTTATCCGGC < 2:2666343/100‑1 tcCGGCACTTATTGTCGGATGCGATGCTTGCGCATCTTATCCGACCTACAAATCGCATCGAA‑CCGTAGGCCGGATGCGGCGTAAACGCCTTATCCGG < 1:575333/95‑1 TTATTGTCGGATGCGATGCTTGCGTATCTTATCCGACCTACAAATCGCATCGAA‑CCGTAGGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGTTCG < 1:1245986/100‑1 TATTGTCGGATGCGATGCTTGCGCATCTTATCCGACCTACAAATCGCATCGAA‑CCGTAGGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGTTCGA < 2:3399698/100‑1 TATTGTCGGATGCGATGCTTGCGCATCTTATCCGACCTACAAATCGCATCGAA‑CCGTAGGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGTTCGA < 1:650030/100‑1 GCCGGATAAGGCGTTTACGCCGCATCCGGCCTACGGTTCGATGCGATTTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATG > 2:40260/1‑100 CCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGTTCGATGCGATTTGTAGGTCGGATAAGATGCGCAAGCATCACATCCGACAATAAGTGCAGGATGC > 1:2724708/1‑100 CGGATGCGGCGTAAACGCCTTATCCGGCCTACGGTTCGATGCGATTTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGCT < 2:2359168/100‑1 CGGATGCGGCGTAAACGCCTTATCCGGCCTACGGTTCGATGCGATTTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGCT < 1:3388931/100‑1 GTAAAAAGCGCCATGTGAATGTAGGTCGCATTCGGCACTTATTGTCGGATGCGATGCTTGCGCATCTTATCCGACCTACGAATCGCATCGAATCTGTAGgcc‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/805761‑805859‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGTTCGATGCGATTTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGCT < NC_000913/805981‑805880 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |