| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1062411 = | NA (NA) | 9 (0.070) | 7/166 | NT | NA | noncoding (5/134 nt) | REP91 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP91 (repetitive extragenic palindromic) element; contains 3 REP sequences |
| ? | NC_000913 | 1062444 = | NA (NA) | noncoding (38/134 nt) | REP91 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP91 (repetitive extragenic palindromic) element; contains 3 REP sequences | |||||
GGTCTACAAAGATTACAGTTCCTGTGGGCCGGATAAGACGTTCACGCCGCATCCGGCAACTGCGCCATAATGCCTGATGCGACGCTAAACGCGTCTTTTCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/1062514‑1062411‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcaggcATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAA > NC_000913/1062444‑1062542 GGTCTACAAAGATTACAGTTCCTGTGGGCCGGATAAGACGTTCACGCCGCATCCGGCAACTGCGCCATAATGCCTGATGCGACGCTAAACGCGTCTTTTC < 1:983161/100‑1 TCTACATAGATTACAGTTCCTGTGGGCCGTATAAGACGTTCACGCCGGATCCGGCAACTGCGCCATAATGCCTGATGCGACGCTAAACGCGTCTTTTCAG < 1:105910/100‑1 TCTACAAAGATTACAGTTCCTGTGGGCCGGATAAGACGTTCACGCCGCATCCGGCAACTGCGCCATAATGCCTGATGCGACGCTAAACGCGTCTTTTCAG < 2:2537397/100‑1 TCTACAAAGATTACAGTTCCTGTGGGCCGGATAAGACGTTCACGCCGCATCCGGCAACTGCGCCATAATGCCTGATGCGACGCTAAACGCGTCTTTTCAG < 1:3532069/100‑1 TCTACAAAGATTACAGTTCCTGTGGGCCGGATAAGACGTTCACGCCGCATCCGGCAACTGCGCCATAATGCCTGATGCGACGCTAAACGCGTCTTTTCAG < 1:1679848/100‑1 CTACAAAGATTACAGTTCCTGTGGGCCGGATAAGACGTTCACGCCGCATCCGGCAACTGCGCCATAATGCCTGATGCGACGCTAAACGCGTCTTTTCAGG < 1:2260607/100‑1 TACAAAGATTACAGTTCCTGTGGGCCGGATAAGACGTTCACGCCGCATCCGGCAACTGCGCCATAATGCCTGATGCGACGCTAAACGCGTCTTTTCAGGC > 2:3629783/1‑100 TACAAAGATTACAGTTCCTGTGGGCCGGATAAGACGTTCACGCCGCATCCGGCAACTGCGCCATAATGCCTGATGCGACGCTAAACGCGTCTTTTCAGGC < 2:3559004/100‑1 TACAAAGATTACAGTTCCTGTGGGCCGGATAAGACGTTCACGCCGCATCCGGCAACTGCGCCATAATGCCTGATGCGACGCTAAACGCGTCTTTTCAGGC < 2:2616411/100‑1 TACAAAGATTACAGTTCCTGTGGGCCGGATAAGACGTTCACGCCGCATCCGGCAACTGCGCCATAATGCCTGATACGACGCTAAACGCGTCTTTTCAGGC > 2:663067/1‑100 CGCCATAATGCCTGATGCGACGCTAAACGCGTCTTTTCAGGCATTATGGCGCAGTTGCCGGATGCGGCGTGAAAGTCTTATCCGGCCCACAGGAACTGTA > 1:2018369/1‑100 CCATAATGCCTGATGCGACGCTAAACGCGTCTTTTCAGGCATTATGGCGCAGTTGCCGGATGCGGCGTGAACGACTTATCCGGCCCACAGGAACTGTAAT > 1:1319737/1‑100 CCATAATGCCTGATGCGACGCTAAACGCGTCTTTTCAGGCATTATGGCACAGTTGCCGGATGCAACGTGAACGTCTTATCCGGCCCACAGGAACTGTAAT > 1:441005/1‑100 ATAATGCCTGATGCGACGCTAAACGCGTCTTTTCAGGCATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCT > 2:2667332/1‑100 AATGCCTGATGCGACGCTAAACGCGTCTTTTCAGGCATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTT > 1:2972777/1‑100 GCCTGATGCGACGCTAAACGCGTCTTTTCAGGCATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTA > 2:2031459/1‑100 GCCTGATGCGACGCTAAACGCGTCTTTTCAGGCATTATGGCGCAGTTGCCGGATGCAGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTA > 1:1098797/1‑100 CCTGATGCGACGCTAAACGCGTCTTTTCAGGCATTATGGCGCAGTTACCGGATGCAGCGTAAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAG > 1:999723/1‑100 CTGATGCGACGCTAAACGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGA > 2:2332049/1‑100 TCAGGCATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTTTAATCTTTGTAGTCCGGTTAAGATTCGTCATCGCATCC < 2:2418851/100‑1 GGCATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGCCCGGTTAAGATGCGTCATCGCATCCGGC > 2:3567870/1‑100 GGCATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGC > 2:1401378/1‑100 GGCATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGC > 1:2885914/1‑100 GGCATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGC < 2:3627082/100‑1 GCATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCTTCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCA < 1:114967/100‑1 GCATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGACCTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGG < 2:3916892/98‑1 GCATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCA > 1:2223465/1‑100 CATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAA < 2:408475/100‑1 GGTCTACAAAGATTACAGTTCCTGTGGGCCGGATAAGACGTTCACGCCGCATCCGGCAACTGCGCCATAATGCCTGATGCGACGCTAAACGCGTCTTTTCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/1062514‑1062411‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcaggcATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAA > NC_000913/1062444‑1062542 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |