| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1357754 = | NA (NA) | 7 (0.060) | 6/160 | NT | NA | intergenic (‑86/+48) | ymjA/puuP | DUF2543 family protein/putrescine importer |
| ? | NC_000913 | 1357793 = | NA (NA) | noncoding (24/30 nt) | REP111 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP111 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
CGCCGCTATCGCAAAGTGCCGTTGTATGATGGTGACAGAACGCCGGTGAGTGAAACGTAATAGTCGGATGCGCGGCGCATTATCCTGCCTGAGGGTAACGCGCCGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/1357861‑1357754‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgccgcgcATCCGACTATTACGTTTCACTCACCGGCGTTCTGTCACCATCATACAACGGCACTTTGCGATAGCGGCGGATCAGATACCATAAATATGCGCCGCCTAA > NC_000913/1357793‑1357891 CGCCGCTATCGCAAAGTGCCGTTGTATGATGGTGACAGAACGCCGGTGAGTGAAACGTAATAGTCGGATGCGCGGCGCATTATCCTGCCTGAGGGTAACG > 1:1144046/1‑100CGCCGCTATCGCAAAGTGCCGTTGTATGATGGTGACAGAACGCCGGTGAGTGAAACGTAATAGTCGGATGCGCGGCGCATTATCCTGCCTGAGGGTAACG < 2:2893119/100‑1CGCCGCTATCGCAAAGTGCCGTTGTATGATGGTGACAGAACGCCGGTGAGTGAAACGTAATAGTCGGATGCGCGGCGCATTATCCTGCCTGAGGGTAACG > 2:1658443/1‑100 GCCGCTATCGCAAAGTGCCGTTGTATGATGGTGACAGAACGCCGGTGAGTGAAACGTAATAGTCGGATGCGCGACGCATTATCCTGCCTGAGGGTAACGC < 1:2380490/100‑1 CCGCTATCGCAAAGTGCCGTTGTATGATGGTGACAGAACGCCGGTGAGTGAAACGTAATAGTCGGATGCGCGGCGCATTATCCTGCCTGAGGGTAACGCG < 2:1979655/100‑1 CCGCTATCGCAAAGTGCCGTTGTATGATGGTGACAGAACGCCGGTGAGTGAAACGTAATAGTCGGATGCGCGGCGCATTATCCTGCCTGAGGGTAACGCG > 1:2890801/1‑100 CGCTATCGCAAAGTGCCGTTGTATGATGGTGACAGAACGCCGGTGAGTGAAACGTAATAGTCGGATGCGCGGCGCATTATCCTGCCTGAGGGTAACGCG > 1:3475401/1‑99 GCTATCGTAAAGTGCCGTTGAATGATGGTGACATAACGCCGGTGAGTGAAACGTAATAGTCGGATGCGCGGCGCATTATCCTGCCTGAGGGTAACGCGCC < 2:231637/100‑1 GCTATCGCAAAGTGCCGTTGTATGATGGTGACAGAACGCCGGTGAGTGAAACGTAATAGTCGGATGCGCGGCGCATTATCCTGCCTGAGGGTAACGCGCC > 1:843562/1‑100 CTATCGCAAAGTGCCGTTGTATGATGGTGACAGAACGCCGGTGAGTGAAACGTAATAGTCGGATGCGCGGCGCATTATCCTGCCTGAGGGTAACGCGCCG > 2:2883056/1‑100 CTATCGCAAAGTGCCGTTGTATGATGGTGACAGAACGCCGGTGAGTGAAACGTAATAGTCGGATGCGCGGCGCATTATCCTGCCTGAGGGTAACGCGCCG < 1:3100419/100‑1 TATCGCAAAGTGCCGTTGTATGATGGTGACAGAACGCCGGTGAGTGAAACGTAATAGTCGGATGCGCGGCGCATTATCCTGCCTGAGGGTAACGCGCCGn < 2:3695412/100‑2 GGATGCGCGGCGCATTATCCTGCCTGAGGGTAACGCGCCGCGCATCCGACTATTACGTTTCACTCACCGGCGTTCTGTCACCATCATACAACGGCACTTT > 1:1374091/1‑100 TGCGCGGCGCATGATGCTGACTGAGGGTAACGCCCCGCGCATCCGACTATTACGTTTCACTCACCGGCGTTCTGTCACCATCATACAACGTCACTTTGC > 2:2643840/1‑99 GCGCGGCGCATTATCCTGCCTGAGGGTAACGCGCCGCGCATCCGACTATTACGTTTCACTCACCGGCGTTCTGTAACCATCATACAACGGCACTTTGCGA > 1:753458/1‑100 CGCGGCGCATTATCCTGCCTGAGGGTAACGCGCCGCGCATCCGACTATTACGTTTCACTAACCGGCGTTCTGTCACCATCATACAACGGCACTTTGCGAT > 1:60901/1‑100 CGGCGCATTATCCTGCCTGAGGGTAACGCGCCGCGCATCCGACTATTACGTTTCACTCACCGGCGTTCTGTCACCATCATACAACGGCACTTTGCGATAG > 1:1361233/1‑100 CGGCGCATTATCCTGCCTGAGGGTAACGCGCCGCGCATCCGACTATTACGTTTCACTCACCGGCGTTCTGTCACCATCATACAACGGAACTTTGCGATAG > 1:898538/1‑100 GGCGCATTATCCTGCCTGAGGGTAACGCGCCGCGCATCCGACTATTACGTTTCACTCACCGGCGTTCTGTCACCATCATACAACGGCACTTTGCGATAGC > 1:3583283/1‑100 GCGCCGCGCATCCGACTATTACGTTTCACTCACCGGCGTTCTGTCACCATCATACAACGGCACTTTGCGATAGCGGCGGATCAGATACCATAAATATGCG < 2:948302/100‑1 GCGCCGCGCATCCGACTATTACGTTTCACTCACCGGCGTTCTGTCACCATCATACAACGGCACTTTGCGATAGCGGCGGATCAGATACCATAAATATGCG < 2:805519/100‑1 CGCCGCGCATCCGACTATTACGTTTCACTCACCGGCGTTCTGTCACCATCATACAACGGCACTTTGCGATAGCGGCGGATCAGATACCATAAATATGCGC > 1:2087792/1‑100 CGCCGCGCATCCGACTATTACGTTTCACTCACCGGCGTTCTGTCACCATCATACAACGGCACTTTACGATAGCGGCGGATCAGATACCATAAATATGCGC > 1:11755/1‑100 CCGCGCATCCGACTATTACGTTTCACTCACCGGCGTTCTGTCACCATCATACAACGGCACTTTGCGATAACGGCGGATCAGATACCATAAATATGCGCC < 2:1693968/99‑1 CGCGCATCCGACTATTACGTTTCACTCACCGGCGTTCTGTCACCATCATACAACGGCACTTTGCGATAGCGGCGGATCAGATACCATAAATATGCGCCGC > 2:2795721/1‑100 GCGCATCCGACTATTACGTTTCCCTCACCGGCGTTCTCTCACCATCATACAACGGCACTTTGCGATAGCGGCGGATCAGATACCATAAATATGCGCCGCC < 2:2639662/100‑1 GCGCATCCGACTATTACGTTTCACTCACCGGCGTTCTGTCACCATCATACAACGGCACTTTGCGATAGCGGCGGATCAGATACCATAAATATGCGCCGCC < 2:3584318/100‑1 GCGCATCCGACTATTACGTTTCACTCACCGGCGTTCTGTCACCATCATACAACGGCACTTTGCGATAGCGGCGGATCAGATACCATAAATATGCGCCGCC < 1:531564/100‑1 CATCCGACTATTACGTTTCACTCACCGGCGTTCTGTCACCATCATACAACGGCACTTTGCGATAGCGGCGGATCAGATACCATAAATATGCGCCGCCTAA > 2:1758022/1‑100 CGCCGCTATCGCAAAGTGCCGTTGTATGATGGTGACAGAACGCCGGTGAGTGAAACGTAATAGTCGGATGCGCGGCGCATTATCCTGCCTGAGGGTAACGCGCCGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/1357861‑1357754‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgccgcgcATCCGACTATTACGTTTCACTCACCGGCGTTCTGTCACCATCATACAACGGCACTTTGCGATAGCGGCGGATCAGATACCATAAATATGCGCCGCCTAA > NC_000913/1357793‑1357891 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |