New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1735983 =	NA (NA)	9 (0.070)	5/166	NT	NA	noncoding (1/74 nt)	REP128 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP128 (repetitive extragenic palindromic) element; contains 2 REP sequences
	?	NC_000913	1736008 =	NA (NA)					noncoding (26/74 nt)	REP128 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP128 (repetitive extragenic palindromic) element; contains 2 REP sequences

TTACAGTTGCTGACAACGTGCGATTTATCTTGCCGGATGCGGCGAGTGCCTTATCCGACCTACATCGATGATCCGCGTAGGCCTGATAAGCGTAGCGCTTCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/1736087‑1735983 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcaggcCTACGCGGATCATCGATGTAGGTCGGATAAGGCACTCGCCGCATCCGGCAAGATAAATCGCACGTTGTCAGCAACTGTAACGCAGAAGGTTATCCT  >  NC_000913/1736008‑1736103                                                                                                                                                                                                           TTACAGTTGCTGACAACGTGCTATTTATCTTGCCGGATGCGGCGAGTGCCTTATCCGACCTACATCGATGATCCGCGTAGGCCTGATAAGCGTAGCGCTT                                                                                                       <  1:1881257/100‑1  TACAGTTGCTGACAACGTGCGATTTATCTTGCCGGATGCGGCGAGTGCCTTATCCGACCTACATCGATGATCCGCGTAGGCCTGATAAGCGTAGCGCTTC                                                                                                      <  1:71843/100‑1                                                         GACCTACATCGATGATCCGCGTAGGCCTGATAAGCGTAGCGCTTCAGGCCTACGCGGATCATCGATGTAGGTCGGATAAGGCACTCGCCGCATCCGGCAA                                               >  2:2514130/1‑100                                                                   GATGATCCGCGTAGACCTGATAAGCGTAGCGCTTCAGGCCTACGCGGATCATATATGTAGATCGGATAAAGCACTCGCCGCATCCGGCAAGATAAATCGC                                     >  2:1059702/1‑100                                                                           GCGTAGGCCTGATAAGCGTAGCGCTTCAGGCCTACGCGGATCATCGATGTAGGTCGGATAAGGCACTCGCCGCATCCGGCAAGATAAATCGCACGTTGTC                             >  1:1498724/1‑100                                                                           GCGTAGGCCTGATAAGCGTAGCGCTTCAGGCCTACGCGGATCATCGATGTAGGTCGGATAAGGCACTCGCCGCATCCGGCAAGATAAATCGCACGTTGTC                             >  1:1595442/1‑100                                                                           GCGTAGGCCTGATAAGCGTAGCGCTTCAGGCCTACGCGGATCATCGATGTAGGTCGGATAAGGCAATCGCCGCATCCGACAAGATAAATCGCACGTTGTC                             >  1:695458/1‑100                                                                               AGGCCTGATAAGCGTAGCGCTTCAGGCCTACGCGGATCATCGATGTAGGTCGGATAAGGCACTCGCCGCATCCGGCAAGATAAATCGCACGTTGTCAGCA                         >  1:268770/1‑100                                                                               AGGCCTGATAAGCGTAGCGCTTCAGGCCTACGCGGATCATCGATGTAGGTCGGATAAGGCACTCGCCGCATCCGGCAAGATAAATCGCACGTTGTCAGCA                         >  1:489409/1‑100                                                                                GGCCTGATAAGCGTAGCGCTTCAGGCCTACGCGGATCATCGATGTAGGTCGGATAAGGCACTCGCCGCATCCGGCAAGATAAATCGCACGTTGTCAGCAA                        >  1:549762/1‑100                                                                                GGCCTGATAAGCGTAGCGCTTCAGGCCTACGCGGATCATCGATGTAGGTCGGATAAGGCACTCGCCGCATCCGGCAAGATAAATCGCACGTTGTCAGCAA                        >  2:1181089/1‑100                                                                                                      AGGCCTACGCGGATCATCGATGTAGGTCGGATAAGGCACTCGCCGCATCCGGCAAGATAAATCGCACGTTGTCAGCAACTGTAACGCAGCAGGTTATCCT  >  2:2582548/1‑100                                                                                                       GGCCTACGCGGATCATCGATGTAGGTCGGATAAGGCACTCGCCGCATCCGGCAAGATAAATCGCACGTTGTCAGCAACTGTAACGCAGAAGGTTATCC   >  2:3228005/1‑98                                                                                                                                                                                                           TTACAGTTGCTGACAACGTGCGATTTATCTTGCCGGATGCGGCGAGTGCCTTATCCGACCTACATCGATGATCCGCGTAGGCCTGATAAGCGTAGCGCTTCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/1736087‑1735983 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcaggcCTACGCGGATCATCGATGTAGGTCGGATAAGGCACTCGCCGCATCCGGCAAGATAAATCGCACGTTGTCAGCAACTGTAACGCAGAAGGTTATCCT  >  NC_000913/1736008‑1736103

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.