New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2146653	NA (NA)	12 (0.090)	5/164	NT	NA	noncoding (54/84 nt)	REP147 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP147 (repetitive extragenic palindromic) element; contains 2 REP sequences
	?	NC_000913	= 2146683	NA (NA)					noncoding (84/84 nt)	REP147 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP147 (repetitive extragenic palindromic) element; contains 2 REP sequences

TGAATAGTAGTTATTTCGCGATTAACTGAGGCGTGCTTCCCCATCGCCTGATGCGACGCTAACGCGTCTTATCATGCCTACAAATCGCTCATTCCCCAGgccggat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2146555‑2146653 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCGGATGCGGTGCGAGCGCCTTATCCGGCCTGGGGAATGAGCGATTTGTAGGCATGATAAGACGCGTTAGCGTCGCATCAGGCGATGGGGAAGCACGCCTCAGTT  <  NC_000913/2146683‑2146578                                                                                                                                                                                                               TGAATAGTAGTTATTTCGCGATTAACTGAGGCGTGCTTCCCCATCGCCTGATGCGACGCTAACGCGTCTTATCATGCCTACAAATCGCTCATTCCCCAGG                                                                                                           >  1:2847037/1‑100  GAATAGTAGTTATTTCGCGATTAACTGAGGCGTGCTTCCCCATCGCCTGATGCGACGCTAACGCGTCTTATCATGCCTACAAATCGCTCATTCCCCAGGC                                                                                                          >  2:2024568/1‑100  GAATAGTAGTTATTTCGCCATTACCTGAGGCTTGCTTCCCCATCGCCTGATGCGACGCTAACGCGTCTTATCATGCCTACAAATCGCTCATTCCCCAGGC                                                                                                          <  2:820254/100‑1   ccgatctGTTATTTCGCGATTAACTGAGGCGTGCTTCCCCATCGCCTGATGCGACGCTAACGCGTCTTATCATGCCTACAAATCGCTCATTCCCCAGGCC                                                                                                         <  1:3159024/93‑1   AATAGTAGTTATTTCGCGATTAACTGAGGCGTGCTTCCCCATCGCCTGATGCGACGCTAACGCGTCTTATCATGCCTACAAATCGCTCATTCCCCAGGCC                                                                                                         <  2:3837142/100‑1    ATAGTAGTTATTTCGCGATTAACTGAGGCGTGCTTCCCCATCGCCTGATGCGACGCTAACGCGTCTTATCATGCCTACAAATCGCTCATTCCCCAGGCCG                                                                                                        <  1:465118/100‑1    ATAGTAGTTATTTCGCGATTAACTGAGGCGTGCTTCCCCATCGCCTGATGCGACGCTAACGCGTCTTATCATGCCTACAAATCGCTCATTCCCCAGGCCG                                                                                                        <  1:3689338/100‑1    ATAGTAGTTATTTCGCGATTAACTGAGGCGTGCTTCCCCATCGCCTGATGCGACGCTAACGCGTCTTATCATGCCTACAAATCGCTCATTCCCCAGGCCG                                                                                                        <  1:2368801/100‑1    ATAGTAGTTATTTCGCGATTAACTGAGGCGTGCTTCCCCATCGCCTGATGCGACGCTAACGCGTCTTATCATGCCTACAAATCGCTCATTCCCCAGGCCG                                                                                                        <  2:2205567/100‑1    ATAGTAGTTATTTCGCGATTAACTGAGGCGTGCTTCCCCATCGCCTGATGCGACGCTAACGCGTCTTATCATGCCTACAAATCGCTCATTCCCCAGGCCG                                                                                                        >  1:2974936/1‑100    ATAGTAGTTATTTCGCGATTAACTGAGGCGTGCTTCCCCATCGCCTGATGCGACGCTAACACGTCTTATCATGCCTACAAATCGCTCATTCCCCAGGCCG                                                                                                        >  1:1103636/1‑100     TAGTAGTTATTTCGCGATTAACTGAGGCGTGCTTCCCCATCGCCTGATGTGACGCTAACGCGTCTTATCATGCCTACATATCGCTCATTCCCCAGGCCG                                                                                                        <  2:337801/99‑1      AGTAGTTATTTCGCGATTAACTGAGGCGTGCTTCCCCATCGCCTGATGCGACGCTAACGCGTCTTATCATGCCTACAAATCGCTCATTCCCCAGGCCGGA                                                                                                      <  1:2783069/100‑1      AGTAGTTATTTCGCGATTAACTGAGGCGTGCTTCCCCATCGCCTGATGCGACGCTAACGCGTCTTATCATGCCTACAAATCGCTCATTCCCCAGGCCGGA                                                                                                      >  1:2405145/1‑100      AGTAGTTATTTCGCGATTAACTGAGGCGTGCTTCCCCATCGCCTGATGCGACGCTAACGCGTCTTATCATGCCTACAAATCGCTCATTCCCCAGGCCGGA                                                                                                      >  1:2234594/1‑100       GTAGTTATTTCGCGATTAACTGAGGCGTGGTTCCCCATCGCGTGATGCGGCGATAACGCGTATTATCATGCCTACAAATCGCTCATTCCGCAGGCCG                                                                                                        >  2:1723331/1‑97       GTAGTTATTTCGCGATTAACTGAGGCGTGCTTCCCCATCGCCTGATGCGACGCTAACGCGTCTTATCATGCCTACAAATCGCTCATTCCCCAGGCCGGAT                                                                                                     <  2:1657989/100‑1          GTTATTTCGCGATTAACTGAGGCGTGCTTCCCCATCGCCTGATGCGACGCTAACGCGTCTTATCATGCCTACAAATCGCTCATTCCCCAGGCCAGATcgg                                                                                                  >  2:3158994/1‑97                              GGCGTGCTTCCCCATCGCCTGATGCGACGCTAACGCGTCTTATCATGCCTACAAATCGCTCATTCCCCAGGCCGGATGCGGTGCGAGCGCCTTATCCGGC                                                                              <  1:3539938/100‑1                              GGCGTGCTTCCCCATCGCCTGATGCGACGCTAACGCGTCTTATCATGCCTACAAATCGCTCATTCCCCAGGCCGGATGCGGTGCGAGCGCCTTATCCGGC                                                                              <  2:2869642/100‑1                              GGCGTGCTTCCCCATCGCCTGATGCGACGCTAACGCGTCTTATCATGCCTACAAATCGCTCATTCCCCAGGCCGGATGCGGTGCGAGCGCCTTATCCGGC                                                                              <  2:1802990/100‑1                               GCGTGCTTCCCCATCGCCTGATGCGACGCTAACGCGTCTTATCATGCCTACAAATCGCTCATTCCCCAGGCCGGATGCGGTGCGAGCGCCTTATCCGGCC                                                                             <  1:1533056/100‑1                               GCGTGCTTCCCCATCGCCTGATGCGACGCTAACGCGTCTTATCATGCCTACAAATCGCTCATTCCCCAGGCCGGATGCGGTGCGAGCGCCTTATCCGGCC                                                                             <  2:1315239/100‑1                                CGTGCTTCCCCATCGCCTGATGCGACGCTAACGCGTCTTATCATGCCTACAAATCGCTCATTCCCCAGGCCGGATGCGGTGCGAGCGCCTTATCCGGCCT                                                                            <  1:680774/100‑1                                CGTGCTTCCCCATCGCCTGATGCGACGCTAACGCGTCTTATCATGCCTACAAATCGCTCATTCCCCAGGCCGGATGCGGTGCGAGCGCCTTATCCGGCCT                                                                            <  1:2583050/100‑1                                CGTGCTTCCCCATCGCCTGATGCGACGCTAACGCGTCTTATCATGCCTACAAATCGCTCATTCCCCAGGCCGGATGCGGTGCGAGCGCCTTATCCGGCCT                                                                            <  1:2118044/100‑1                                  TGCTTCCCCATCGCCTGATGCGACGCTAACGCGTCTTATCATGCCTACAAATCGCTCATTCCCCAGGCCGGATGCGGTGCGAGCGCCTTATCCGGCCTGG                                                                          <  1:1758201/100‑1                                   GCTTCCCCATCGCCTGATGCGACGCTAACGCGTCTTATCATGCCTACAAATCGCTCATTCCCCAGGCCGGATGCGGTGCGAGCGCCTTATCCGGCCTGGG                                                                         <  2:1885011/100‑1                                   GCTTCCCCATCGCCTGATGCGACGCTAACGCGTCTTATCATGCCTACAAATCGCTCATTCCCCAGGCCGGATGCGGTGCGAGCGCCTTATCCGGCCTGGG                                                                         <  2:2842039/100‑1                                   GCTTCCCCATCGCCTGATGCGACGCTAACGCGTCTTATCATGCCTACAAATCGCTCATTCCCCAGGCCGGATGCGGTGCGAGCGCCTTATCCGGCCTGGG                                                                         <  2:2856111/100‑1                                                                                                    GCCGGATGTGGTGCGAGCGCCTTATCCGGCCTGGGGAATGAGCGATTTGTTGGCATGATAAGACGCGTTAGCGTCGCATCAGGCGATGGGGAAGCACGCC        <  1:171758/100‑1                                                                                                    GCCGGATGCGGTGCGAGCGCCTTATCCGGCCTGGGGAATGAGCGATTTGTAGGCATGATAAGACGCGTTAGCGTCGCATCAGGCGATGGGGAAGCACGCC        >  1:581905/1‑100                                                                                                    GCCGGATGCGGTGCGAGCGCCTTATCCGGCCTGGGGAATGAGCGATTTGTAGGCATGATAAGACGCGTTAGCGTCGCATCAGGCGATGGGGAAGCACGCC        <  2:393526/100‑1                                                                                                    GCCGGATGCGGTGCGAGCGCCTTATCCGGCCTGGGGAATGAGCGATTTGTAGGCATGATAAGACGCGTTAGCGTCGCATCAGGCGATGGGGAAGCACGCC        >  2:487180/1‑100                                                                                                     CCGGATGCGGTGCGAGCGCCTTATCCGGCCTGGGGAATGAGCGATTTGTAGGCATGATAAGACGCGTTAGCGTCGCATCAGGCGATGGGGAAGCACGCCT       >  1:2202700/1‑100                                                                                                      CGGATGCGGTGCGAGCGCCTTATCCGGCCTGGGGAATGAGCGATTTGTAGGCATGATAAGACGCGTTAGCGTCGCATCAGGCGATGGGGAAGCACGCCTC      <  2:2452257/100‑1                                                                                                         ATGCGGTGCGAGCGCCTTTTCCGGACTGGGGAATTATCGATTTGTAGGAATGATAAGACGCGTTAGCGTCGCATCAGGCGATGGGGAAGCACGCCTCAG    <  1:1475405/99‑1                                                                                                         ATGCGGTGCGAGCGCCTTATCCGGCCTGGGGAATGAGCGATTTGTAGGCATGATAAGACGCGTTAGCGTCGCATCAGGCGATGGGGAAGCACGCCTCAGT   <  1:3570595/100‑1                                                                                                         ATGCGGTGCGAGCGCCTTATCCGGCCTGGGGAATGAGCGATTTGTAGGCATGATAAGACGCGTTAGCGTCGCATCAGGCGATGGGGAAGCACGCCTCAGT   >  2:434978/1‑100                                                                                                          TGCGGTGCGAGCGCCTTATCCGGCCTGGGGAATGAGCGATTTGTAGGCATGATAAGACGCGTTAGCGTCGCATCAGGCGATGGGGAAGCACGCCTCAGTT  <  2:1027978/100‑1                                                                                                                                                                                                               TGAATAGTAGTTATTTCGCGATTAACTGAGGCGTGCTTCCCCATCGCCTGATGCGACGCTAACGCGTCTTATCATGCCTACAAATCGCTCATTCCCCAGgccggat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2146555‑2146653 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCGGATGCGGTGCGAGCGCCTTATCCGGCCTGGGGAATGAGCGATTTGTAGGCATGATAAGACGCGTTAGCGTCGCATCAGGCGATGGGGAAGCACGCCTCAGTT  <  NC_000913/2146683‑2146578

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.