| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2280409 = | 100 (0.720) | 17 (0.130) | 9/164 | NT | 16.7% | coding (75/696 nt) | rsuA | 16S rRNA pseudouridine(516) synthase |
| ? | NC_000913 | 2280436 = | 78 (0.610) | coding (48/696 nt) | rsuA | 16S rRNA pseudouridine(516) synthase | |||||
GACCTCCGTTTTTACAGGCAAAATCACACACATGCGACTTGATAAATTTATCGCACAGCAACTCGGCGTTAGCCGTGCTATTGCCGGGCGTGAAATCCGCGGCAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/2280514‑2280409‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcaatAGCACGGCTAACGCCGAGTTGCTGTGCGATAAATTTATCAAGTCGCATGTGTGTGATTTTGCCTGTAAAAACGGAGGTCGGGCATTGACCCGAAAATCT > NC_000913/2280436‑2280534 GACCTCCGTTTTTACAGGCAAAATCACACACATGCGACTTGATAAATTTATCGCACAGCAACTCAGCGTTAGCCGTGCTATCGCCGGGCGTGAAATCCGC > 1:3081401/1‑100 ACCTCCGTTTTTACAGGCAAAATCACACACATGCGACTTGATAAATTTATCGCACAGCAACTCGGCGTTAGCCGTGCTATTGCCGGGCGTGAAATCCGCG < 1:1406870/100‑1 ACCTCCGTTTTTACAGGCAAAATCACACACATGCGACTTGATAAATTTATCGCACAGCAACTCGGCGTTAGCCGTGCTATTGCCGGGCGTGAAATCCGCG < 2:1069502/100‑1 CCTCCGTTTTTACAGGCAAAATCACACACATGCGACTTGATAAATTTATCGCACAGCAACTCGGCGTTAGCCGTGCTATTGCCGGGCGTGAAATCCGCGG < 2:77926/100‑1 CCTCCGTTTTTACAGGCAAAATCACACACATGCGACTTGATAAATTTATCGCACAGCAACTCGGCGTTAGCCGTGCTATTGCCGGGCGTGAAATCCGCG < 2:662673/99‑1 CTCCTTTTTTACATTCAAAATCACACTCATGCGACTTGATAAATTTATCGCACAGCAACTCGGCGTTAGCCGTGCTATTGCCGGGCGTGAAATCCGCGGC < 1:1327318/100‑1 CTCCGTTTTTACAGGCAAAATCACACACATGCGACTTGATAAATTTATCGCACAGCAACTCGGCGTTAGCCGTGCTATTGCCGGGCGTGAAATCCGCGGC > 2:2118986/1‑100 CTCCGTTTTTACAGGCAAAATCACACACATGCGACTTGATAAATTTATCGCACAGCAACTCGGCGTTAGCCGTGCTATTGCCGGGCGTGAAATCCGCGGC > 1:3618573/1‑100 CTCCGTTTTTACAGGCAAAATCACACACATGCGACTTGATAAATTTATCGCACAGCAACTCGGCGTTAGCCGTGCTATTGCCGGGCGTAAAATCCGCGGC > 1:2389273/1‑100 CTCCGTTTTTACAGGCAAAATCACACACATGCGACTTGATAAATTTATAGCACAGCAACTCGGCGATAGCCGTGCTATTGCCGGGCGTGAAATACGCGGC > 2:2832191/1‑100 TCCGTTTTTACAGGCAAAATCACACACATGCGACTTGATAAATTTATCGCACAGCAACTCGGCGTTAGCCGTGCTATTGCCGGGCGTGAAATCCGCGGCA > 2:2841561/1‑100 CGTTTTTACAGGCAAAATCACACACATGCGACTTGATAAATTTATCGCACAGCAACTCGGCGTTAGCCGTGCTATTGCCGGGCGTGAAATCCGCGGCAAT > 1:1511596/1‑100 CCGTGCTATTGCCGGGCGTGAAATCCGCGGCAATAGCACGGCTAACGCCGAGTTGCTGTGCGATAAATTTATCAAGTCGCATGTGTGTGATTTTGCCTGT > 1:2387755/1‑100 CGTGCTATTGCCGGGCGTGAAATCCGCGGCAATAGCACGGCTAACGCCGAGTTGCTGTGCGATAAATTTAGCAAGTCGAATGTGTGTGATTTTGACTGTA > 2:1312344/1‑100 GTGCTATTGCCGGGCGTGAAATCCGCGGCAATAGCACGGCTAACGCCGAGTTGCTGTGCGATAAATTTATCAAGTCGCATGTGTGTGATTTTGCCTGTAA > 1:2227047/1‑100 GTGCTATTGCCGGGCGTGAAATCCGCGGCAATAGCACGGCTAACGCCGAGTTGCTGTGCGATAAATTTATCAAGTCGCATGTGTGTGATTTTGCCTGTAA > 2:279750/1‑100 GTGCTATTGCCGGGCGTGAAATCCGCGGCAATAGCACGGCTAACGCCGAGTTGCTGTGCGATAAATTTATCAAGTCGCATGTGTGTGATTTTGCCTGTAA > 1:3375072/1‑100 GTGCTATTGCCGGGCGTGAAATCCGCGGCAATAGCACGGCTAACGCCGAGTTGCTGTGCGATAAATTTATCAAGTCGCATGTGTGTGATTTTGCCTGTAA > 1:3628047/1‑100 TGCTATTGCCGGGCGTGAAATCCGCGGCAATAGCACGGCTAACGCCGAGTTGCTGTGCGATAAATTTATCAAGTCGCATGTGTGTGATTTTGCCTGTAAA > 1:2469715/1‑100 TGCTATTGCCGGGCGTGAAATCCGCGGCAATAGCACGGCTAACGCCGAGTTGCTGTGCGATAAATTTATCAAGTCGCATGTGTGTGATTTTGCCTGTAAA > 1:3476253/1‑100 GCTATTGCCGGGCGTGAAATCCGCGGCAATAGCACGGCTAACGCCGAGTTGCTGTGCGATAAATTTATCAAGTCGCATGTGTGTGATTTTGCCTGTAAAA > 1:420880/1‑100 CTATTGCCGGGCGTGAAATCCGCGGCAATAGCACGGCTAACGCCGAGTTGCTGTGCGATAAATTTATCAAGTCGCATGTGTGTGATTTTGCCTGTAAAAA > 1:3760754/1‑100 TATTGCCGGGCGTGAAATCCGCGGCAATAGCACGGCTAACGCCGAGTTGCTGTGCGATAAATTTATCAAGTCGCATGTGTGTGATTTTGCCTGTAAAAAC > 1:2195922/1‑100 TATTGCCGGGCGTGAAATCCGCGGCAATAGCACGGCTAACGCCGAGTTGCTGTGCGATAAATTTATCAAGTCGCATGTGTGTGATTTTGCCTGTAAAAAC > 1:712384/1‑100 ATTGCCGGGCGTGAAATCCGCGGCAATAGCCCGGCTAACTCCGAGTTGCTGTGCGATAAATTTATCAAGTCGCATATGTGTGATTTTGCCTATAAAAAC > 1:808857/1‑99 ATTGCCGGGCGTGAAATCCGCGGCAATAGCACGGCTAACGCCGAGTTGCTGTGCGATAAATTTATCAAGTCGCATGTGTGTGATTTTGCCTGTAAAAACG > 1:1421192/1‑100 ATTGCCGGGCGTGAAATCCGCGGCAATAGCACGACTAACGCCGAGTTGCTGTGCGATAAATTTATCAAGTCGCATGTGTGTGATTTTGCCTGTAAAAACG > 2:624325/1‑100 nGCCGGGCGTGAAATCCGCGGCAATAGCACGGCTAACGCCGAGTTGCTGTGCGATAAATTTATCAAGTCGCATGTGTGTGATTTTGCCTGTAAAAACGGA > 1:834277/2‑100 TGCCGGGCGTGAAATCCGCGGCAATAGCACGGCTAACGCCGAGTTGCTGTGCGATAAATTTATCAAGTCGCATGTGTGTGATTTTGCCTGTAAAAACGGA > 2:1644376/1‑100 CGCGGCAATAGCACGGCTAACGCCGAGTTGCTGTGCGATAAATTTATCAAGTCGCATGTGTGTGATTTTGCCTGTAAAAACGGAGGTCGGGCATTGACCC < 2:3375034/100‑1 GCAATAGCACGGCTAACGCCGAGTTGCTGTGGGATAAATTTATCAAGTCGCATGTGTGTTATTTTGCCTGTAAAAACGGAGGTCGGGCATTGACCCGAAA < 2:1024570/100‑1 GCAATAGCACGGCTAACGCCGAGTTGCTGTGCGATAAATTTATCAAGTCGCATGTGTGTGATTTTGCCTGTAAAAACGGAGGTCGGGCATTGACCCGAAA > 2:3246682/1‑100 GCAATAGCACGGCTAACGCCGAGTTGCTGTGCGATAAATGTATCAAGGCGCATGTGTGTGATTTTGCCTGTAAAAACTGAGGTCGGGCATTGACCCGAAA < 2:408237/100‑1 CAATAGCACGGCTAACGCCGAGTTGCTGTGCGATAAATTTATCAAGTCGCATGTGTGTGATTTTGCCTGTAAAAACGGAGGTCGGGCATTGACCCGAAAA < 2:553852/100‑1 ATAGCACGGCTAACGCCGAGTTGCTTTGCGATAAATTTATCAAGTCGCATGTGTGTGATTTTGCCTGTAAAAACGGAGGTCGGGCATTGACCCGAAAATC < 2:3339189/100‑1 ATAGCACGGCTAACGCCGAGTTGCTGTGCGATAAATTTATCAAGTCGCATGTGTGTGATTTTGCCTGTAAAAACGGAGGTCGGGCATTGACCCGAAAATC > 1:912608/1‑100 TAGCACGGCTAACGTCGAGTTGCTGTGCGATAAATTTATCAAGTCGCATGTGTGTGATTTTGCCTGTAAAAACGGAGGTCGGGCATTGACCCGAAAATCT < 2:2430182/100‑1 TAGCACGGCTAACGCCGAGTTGCTGTGCGATAAATTTATCAAGTCGCATGTGTGTGATTTTGCCTGTAAAACCGGAGGCCGGGCATTGACCCGAAAATC > 2:382034/1‑99 TAGCACGGCTAACGCCGAGTTGCTGTGCGATAAATTTATCAAGTCGCATGTGTGTGATTTTGCCTGTAAAAACGGAGGTCGGGCATTGACCCGAAAATCT < 1:2811001/100‑1 TAGCACGGCTAACGCCGAGTTGCTGTGCGATAAATTTATCAAGTCGCATGTGTGTGATTTTGCCTGTAAAAACGGAGGTCGGGCATTGACCCGAAAATCT > 1:3424383/1‑100 TAGCACGGCTAACGCCGAGTTGCTGTGCGATAAATTTATCAAGTCGCATGTGTGTGATTTTGCCTGTAAAAACGGAGGTCGGGCATTGACCCGAAAATCT < 1:763307/100‑1 TAGCACGGCTAACGCCGAGTTGCTGTGCGATAAATTTATCAAGTCGCATGCGTGTGATTTTGCCTGTAAAAACGGAGGTCGGGCATTGACCCGAAAATCT < 2:523059/100‑1 TAGCACGGCTAACGCCGAGTTGCTGTGCGATAAAGTTATCAAGTCGCATGTGTGTGATTTTGCCTGTAAAAACGGAGGTCGGGCATTGACCCGAAAATCT < 2:2445542/100‑1 GACCTCCGTTTTTACAGGCAAAATCACACACATGCGACTTGATAAATTTATCGCACAGCAACTCGGCGTTAGCCGTGCTATTGCCGGGCGTGAAATCCGCGGCAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/2280514‑2280409‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcaatAGCACGGCTAACGCCGAGTTGCTGTGCGATAAATTTATCAAGTCGCATGTGTGTGATTTTGCCTGTAAAAACGGAGGTCGGGCATTGACCCGAAAATCT > NC_000913/2280436‑2280534 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |