New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 3680409NA (NA)10 (0.080) 5/160 NT NA noncoding (43/76 nt) REP265 (repetitive extragenic palindromic) element; contains 2 REP sequences REP265 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 = 3680441 NA (NA)noncoding (75/76 nt) REP265 (repetitive extragenic palindromic) element; contains 2 REP sequences REP265 (repetitive extragenic palindromic) element; contains 2 REP sequences

Only 100 of 197 total aligned reads displayed.

CGCGGCGCGATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTACGTCATCCGTGGCGACAGAGGTGGTCG  >  NC_000913/3680310‑3680508
                                                                                                   |                                                                                                   
  cggcgCGATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATAcc                                                                                                   <  2:1431424‑M1/100‑3 (MQ=255)
  cggcgCGATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATAcc                                                                                                   <  1:3517743‑M1/100‑3 (MQ=255)
   ggcgCGATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATAcct                                                                                                  <  2:894150‑M1/100‑4 (MQ=255)
     cgcgATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATAcctga                                                                                                >  1:3409312‑M1/1‑95 (MQ=255)
      gcgATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGATGGATAAAGTGTTACCCCACTATCCAGCTCATCAATAAATAactgat                                                                                               >  2:336050‑M1/1‑94 (MQ=255)
       cgATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATAcctgatg                                                                                              <  2:1176670‑M1/100‑8 (MQ=255)
         aTTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATAcctgatggt                                                                                            <  1:1924984‑M1/100‑10 (MQ=255)
           tATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTtg                                                                                          <  2:764735/100‑1 (MQ=255)
             tCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTtgtg                                                                                        <  1:2169544/100‑1 (MQ=255)
              cccGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGc                                                                                       >  2:1070122/1‑100 (MQ=255)
              cccGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGc                                                                                       >  1:304649/1‑100 (MQ=255)
               ccGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGTAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCt                                                                                      <  1:2747359/100‑1 (MQ=255)
               ccGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCt                                                                                      <  2:3033274/100‑1 (MQ=255)
                cgcgTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTa                                                                                     <  1:1827473/100‑1 (MQ=255)
                  cgTGAGGCTATGCCAGCGTAATCGCAGCATATGCAAAAGGCTCAATAAAGTGTTACCCCTCTATCCAGCTCATCCTTAAATACCTGATGGTTGTGCt                                                                                      <  2:1314200/97‑1 (MQ=255)
                  cgTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAAc                                                                                   <  1:1775120/100‑1 (MQ=255)
                   gTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATAcctgatggtgatgagttag                                                                                  <  1:641806‑M1/100‑20 (MQ=255)
                   gTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACt                                                                                  <  1:1144861/100‑1 (MQ=255)
                    tGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACtc                                                                                 <  1:1900618/100‑1 (MQ=255)
                    tGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTATGCTAACtc                                                                                 >  1:838413/1‑100 (MQ=255)
                       ggCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCACATCAATAAATACCTGATGGTTGTGCTAACtca                                                                                >  1:409696/1‑98 (MQ=255)
                       ggCGATGCCAGCGTAAACGAAGAATATTAAAAAGAATGGATAAAGTGTTACCCCTCTATACAGCTCATCCATAAATACCTGATGGTTTTTCTAACtcatc                                                                              >  2:473956/1‑100 (MQ=255)
                        gCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCA                                                                             >  2:2089577‑M2/1‑100 (MQ=255)
                         cGATGCCAGCGTAAACGCAGCATATGCAAATGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCCGATGGTTGTGCTAACTCATCAC                                                                            >  2:1583402‑M2/1‑100 (MQ=255)
                         cGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCAC                                                                            >  2:1262613‑M2/1‑100 (MQ=255)
                         cGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCAC                                                                            >  1:74980‑M2/1‑100 (MQ=255)
                         cGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCAC                                                                            <  1:51161‑M2/100‑1 (MQ=255)
                          gATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACC                                                                           >  2:434773‑M2/1‑100 (MQ=255)
                              ccAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACtcagatcggaag                                                                       >  1:1082868/1‑91 (MQ=255)
                               cAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAG                                                                      >  2:3610605‑M2/1‑100 (MQ=255)
                                aGCGTAAACGCAGCATATGCAAAAGTCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATAcctgatggtgatgagttagcacaaccatcagg                                                                     <  2:393431‑M1/100‑33 (MQ=255)
                                aGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATAcctgatggtgatgagttagcacaaccatcagg                                                                     <  2:2637968‑M1/100‑33 (MQ=255)
                                aGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATAcctgatggtgatgagttagcacaaccatcagg                                                                     <  2:1447409‑M1/100‑33 (MQ=255)
                                aGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATAcctgatggtgatgagttagcacaaccatcagg                                                                     <  1:902837‑M1/100‑33 (MQ=255)
                                 gCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGc                                                                    <  1:3436281/100‑1 (MQ=255)
                                 gCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGc                                                                    <  1:815065/100‑1 (MQ=255)
                                       aCGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACt                                                              >  2:3245348/1‑100 (MQ=255)
                                       aCGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATAGTTGTGCTAACTCATCACCATCAGGCATTACt                                                              >  2:3345311/1‑100 (MQ=255)
                                        cGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATAcctgatggtgatgagttagcacaaccatcaggtatttatg                                                             <  1:1553453‑M1/100‑41 (MQ=255)
                                        cGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACtg                                                             <  2:698741/100‑1 (MQ=255)
                                        cGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACtg                                                             >  2:137547/1‑100 (MQ=255)
                                           agcaTATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACtgtg                                                           <  1:2660821/99‑1 (MQ=255)
                                            gcaTATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATAGCTGATGGGTGTGCTAACTCATCACCATCAGTCATTACtgt                                                            >  2:1292463/1‑97 (MQ=255)
                                             caTATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCa                                                         <  1:3661177/99‑1 (MQ=255)
                                             caTATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAg                                                        <  1:2833404/100‑1 (MQ=255)
                                              atatGCAAAAGGCTGGATAAAGTGTTTCCTCTCTTTTCAGTTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAgg                                                       <  1:1976535/100‑1 (MQ=255)
                                                atGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTg                                                     <  2:3771379/100‑1 (MQ=255)
                                                aggCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTg                                                     <  2:3157963/98‑1 (MQ=255)
                                                 tGCAAAAGGCTGGATACCGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATTGTTGTGCTAACTCATCACCTTCAGGCATTACTGTGCAGGTgg                                                    <  2:3435307/100‑1 (MQ=255)
                                                 tGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTgg                                                    >  1:2589137/1‑100 (MQ=255)
                                                 tGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTgg                                                    <  2:3697968/100‑1 (MQ=255)
                                                  gCAAAAGGCTTGTTAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGa                                                   <  1:870106/100‑1 (MQ=255)
                                                  gCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGa                                                   >  1:2433908/1‑100 (MQ=255)
                                                   cgaaaGGATGGATAAAGTGTTACCCCTGCATGCAGCCCATCGCTAAATACCTGATGGTTGTGCTAACTCGTCACCTTCAGGCATTATTGTGCAGGTGGa                                                   <  2:2430741/97‑1 (MQ=255)
                                                   cAAAAGGCTGGATAAAGTGTTACCCCGCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATAACCATCAGGCATTACTGTGCAGGTGCaa                                                  >  2:1814396/1‑100 (MQ=255)
                                                    gatgagCTGGATAGAGGGGTAACACTTTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATAAGGCATTACTGTGCCGGTGGAat                                                 >  2:3566912/6‑100 (MQ=21)
                                                    aaaaGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAat                                                 >  1:1582816/1‑100 (MQ=255)
                                                       aGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATc                                              >  1:2957896/1‑100 (MQ=255)
                                                        ggCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATcc                                             >  1:1603931/1‑100 (MQ=255)
                                                         gCTGGATAGAGGGGTAACACTTTATCCAGCTCATACATAAATAACTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCg                                            >  2:3118871/1‑100 (MQ=25)
                                                         gCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCg                                            <  2:3481721/100‑1 (MQ=255)
                                                         gCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCg                                            >  1:2017456/1‑100 (MQ=255)
                                                         gCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCg                                            >  1:1514561/1‑100 (MQ=255)
                                                          cTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGt                                           >  2:289618/1‑100 (MQ=255)
                                                          cTGGATAAAGTGTTACCCCTCTAACCAGCTCATCCATAAATACCTGATTGTTGTGCTAACTCATCACCAGCATTCATTACTGTGCAGGTGGAATATCCg                                            <  2:3798819/99‑1 (MQ=255)
                                                           tGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTc                                          <  2:2463884/100‑1 (MQ=255)
                                                             gATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTTATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTc                                          <  2:3403350/98‑1 (MQ=255)
                                                               tAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCAc                                        >  2:3207557/1‑98 (MQ=255)
                                                               tAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACtt                                      <  1:2696098/100‑1 (MQ=255)
                                                                 aaGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCa                                    >  1:47438/1‑100 (MQ=255)
                                                                 aaGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTACTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCa                                    >  1:2327556/1‑100 (MQ=255)
                                                                   gtgtTGCCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAgg                                  <  1:3199436/100‑1 (MQ=255)
                                                                   gtgtTACCCCTCTATCCAGTTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAg                                   <  2:1018832/99‑1 (MQ=255)
                                                                   gtgtTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCAACACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAg                                   >  1:71848/1‑99 (MQ=255)
                                                                     gtTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGAt                                >  1:1426023/1‑100 (MQ=255)
                                                                     gtTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGAt                                <  1:2963612/100‑1 (MQ=255)
                                                                     gtTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGAACTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGAt                                >  1:1337934/1‑100 (MQ=255)
                                                                      ttACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGAt                                <  1:3673516/99‑1 (MQ=255)
                                                                       tACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGTTAACTCATCACCATCCGGCATTACTGTGAAGGTGGAATATCAGTCACTTCAGGATGt                              >  1:2979833/1‑100 (MQ=255)
                                                                       tACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGt                              >  2:678296/1‑100 (MQ=255)
                                                                        aCCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTa                             >  1:226528/1‑100 (MQ=255)
                                                                         ccccTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTa                             <  1:2417772/99‑1 (MQ=255)
                                                                         ccccTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTAc                            >  2:2227231/1‑100 (MQ=255)
                                                                           ccTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTACGt                          >  2:2308089/1‑100 (MQ=255)
                                                                           ccTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTACGt                          >  2:2154136/1‑100 (MQ=255)
                                                                           ccTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTACGt                          >  1:127082/1‑100 (MQ=255)
                                                                             tctATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTaagat                         >  1:1630086/1‑95 (MQ=255)
                                                                                aTCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTACGTCATcc                     >  2:1988672/1‑100 (MQ=255)
                                                                                 tCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGtatttatagatgagctggatagaggggtaacactttatccagccttttg                    <  1:4899‑M2/100‑50 (MQ=255)
                                                                                 tCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTACGTCATCCg                    >  1:1249123/1‑100 (MQ=255)
                                                                                    aGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTACGTCATCCGTgg                 <  2:605156/100‑1 (MQ=255)
                                                                                           ncATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTACGTCATCCGTGGCGACaga          >  2:1650852/2‑100 (MQ=255)
                                                                                           ccATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTACGTCATCCGTGGCGACaga          <  2:1975227/100‑1 (MQ=255)
                                                                                           ccATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTACGTCATCCGTGGCGACaga          >  2:2115237/1‑100 (MQ=255)
                                                                                            naTAAATACCTGATGGTTATGCTAACTCATCACAATCAGGCATTACTGTCCAGGTGGAATATCCTTCACTTCAGGATGTACGTTATCCATTGCGAc             >  2:2368405/2‑96 (MQ=255)
                                                                                             aTAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTACGTCATCCGTGGCGACAGAgg        <  2:2804146/100‑1 (MQ=255)
                                                                                              tgcaTACCTGATGTTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTACGTCATCCGTGGCGACAGAggt       <  2:3316814/97‑1 (MQ=255)
                                                                                              tAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTACGTCATCCGTGGCGACAGAggt       >  2:1149239/1‑100 (MQ=255)
                                                                                              tAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTACGTCATCCGTGGCGACAGAggt       >  2:2714399/1‑100 (MQ=255)
                                                                                                  tACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTACGTCATCCGTGGCGACAGAGGTGGTc   >  1:1731124/1‑100 (MQ=255)
                                                                                                   |                                                                                                   
CGCGGCGCGATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTACGTCATCCGTGGCGACAGAGGTGGTCG  >  NC_000913/3680310‑3680508

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.