New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 225998NA (NA)27 (0.200) 14/170 NT NA noncoding (240/2904 nt) rrlH 23S ribosomal RNA of rrnH operon
?NC_000913 = 226015 NA (NA)noncoding (257/2904 nt) rrlH 23S ribosomal RNA of rrnH operon

Only 100 of 111 total aligned reads displayed.

GGTTAATGAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCAGTGTGTGTGTTAGTGGAAGCGTCTGGAAAGGCGCGCGATACAGGGTGACAGCCCC  >  NC_000913/225926‑226095
                                                                        |                                                                                                 
ggTTAATGAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGACGAGc                                                                        >  2:3103516/1‑100 (MQ=14)
 gTTAATGAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGcc                                                                       >  2:3751653/1‑100 (MQ=32)
  ttAATGAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGccc                                                                      <  2:2386401/100‑1 (MQ=33)
  ttAATGAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGccc                                                                      <  1:206436/100‑1 (MQ=33)
  ttAATGAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCACCCATTATCGGCGAGCGAACGGGGAGGAGc                                                                        <  2:1866567/98‑1 (MQ=255)
   tAATGAGGCGAACCTGGGGAACTGAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCa                                                                     <  2:156447/100‑1 (MQ=17)
    aaTGAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGTGCGAAGGGGGAGGAGccc                                                                      >  2:6261/1‑98 (MQ=12)
    aaTGAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCag                                                                    >  1:878406/1‑100 (MQ=33)
    aaTGAGGCGAACCGGGGGAACTGAAACATCTAAGTACACCAAGGAAAAGAAATCAACCGACATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCag                                                                    >  2:264495/1‑100 (MQ=255)
     attaGGAGAACCGGGGGAACTTAAACATCTAAGTAACCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCCAACTGGGAGGAGCCCaga                                                                   <  2:409784/97‑1 (MQ=11)
       gAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGc                                                                 >  2:3392538/1‑100 (MQ=32)
       gAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGc                                                                 <  1:927238/100‑1 (MQ=33)
       gAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAAATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGc                                                                 >  1:2955772/1‑100 (MQ=18)
         ggCGAACCGGGGGAACTGAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCt                                                               >  1:1080622/1‑100 (MQ=32)
          gCGAACCGGGGGAACCGAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTg                                                              <  1:3868659/100‑1 (MQ=18)
            gAACCGGGGGAACTGAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGaa                                                            <  1:6261/100‑1 (MQ=32)
            gAACCGGGGGAACTGAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGaa                                                            <  1:1625490/100‑1 (MQ=33)
              atctggggAACTGAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATc                                                          <  2:3755306/96‑1 (MQ=18)
              aCCGGGGGAACTGAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATc                                                          <  1:3631870/100‑1 (MQ=33)
               ccGGGGGAACTGAAACATCTAAGTACCCCGAGGCAAAGAAATCAACCGAGATTCACCCAGTAGCAGCGAAGGCACGGGGAGGAGCCCagagaccaagtc                                                          >  2:1313522/1‑91 (MQ=11)
                cGGGGGAACTGAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCTGCGAGCGAACTTGGAGGAGCCCAGATCCTGAATc                                                          <  2:3038212/98‑1 (MQ=11)
                cGGGGGAACTGAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCAg                                                        >  2:766584/1‑100 (MQ=32)
                 gggggAACTGAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCAgt                                                       >  1:390625/1‑100 (MQ=32)
                 gggggAACTGAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCAg                                                        <  1:1591984/99‑1 (MQ=33)
                  ggggAACTGAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCAgtg                                                      >  1:1980360/1‑100 (MQ=32)
                  ggggAACTGAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCAgat                                                      >  1:3755345/1‑98 (MQ=17)
                   gggAACTGAAACATCTAAGAACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCAgt                                                       <  2:1476970/98‑1 (MQ=17)
                    ggAACTGAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCAgtgt                                                     <  1:2862932/99‑1 (MQ=33)
                      aaCTGAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCAgtgtgtg                                                  <  1:3240973/100‑1 (MQ=33)
                       aCTGAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCAgtgtgtgt                                                 >  1:1555261/1‑100 (MQ=32)
                       aCTGAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCAgtgtgtg                                                  >  2:2869018/1‑99 (MQ=32)
                        cTGAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCAgtgtgtgtg                                                <  1:1306246/100‑1 (MQ=33)
                        cTGAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGAAGGAGCCCAGAGCCTGAATCAgtctgtgtg                                                >  1:1801124/1‑100 (MQ=12)
                         tGAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGGGATTCCGCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCAgtgtgtgtg                                                <  1:1754781/99‑1 (MQ=16)
                         tGAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCAgtgtgtgtg                                                >  1:3829327/1‑99 (MQ=32)
                         tGAAACATCTAAGTACCCCGA‑GTAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCAGTGTGTGTGtt                                              <  1:1722565/100‑1 (MQ=255)
                          gAAACATCTAAGTATCCCGAGGAAAAGAAATCAACCGAGATTCCTCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCAGTGTGTGTGtt                                              <  1:978142/100‑1 (MQ=255)
                          gAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCAgagtgtgtg                                                >  2:3661871/1‑98 (MQ=17)
                          gAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCAGTGTGTGTGtt                                              >  1:3562171/1‑100 (MQ=33)
                          gAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCAGTGTGTGTGtt                                              <  2:878395/100‑1 (MQ=33)
                          gAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCACAGAGCCTGAATGAgtgtgtg                                                  >  2:2971715/1‑96 (MQ=12)
                           aaaCATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCAGTGTGGGTGtt                                              >  2:3814476/1‑99 (MQ=18)
                            aaCATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCAGTGTGTGTGTTAg                                            >  1:3458843/1‑100 (MQ=32)
                            aaCATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCAGTGTGTGTGTTAg                                            <  1:1815287/100‑1 (MQ=33)
                            aaCATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGACGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCAGTGTGTGAGTTAg                                            >  1:1062612/1‑100 (MQ=12)
                               aTCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCAGTGTGTGTGTTAGTgg                                         <  1:2177882/100‑1 (MQ=33)
                               aTCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCAGTGTGTGTGTTAGTgg                                         <  2:1611520/100‑1 (MQ=32)
                                tCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCAGTGTGTGTGTTAGTGGa                                        <  1:2597785/100‑1 (MQ=33)
                                tCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATAAGTGTGTGTGTTAGTGGa                                        >  1:3860042/1‑100 (MQ=17)
                                  tAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGTGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCAGTGTGTGTGTTAGTGGAAg                                      <  1:2226050/100‑1 (MQ=18)
                                  tAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCACAGAGACTGAATCAGTGTGTGTGTTAGTGGaa                                       >  1:896410/1‑99 (MQ=12)
                                    aGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCTCGAGCCTGAACCAGTGTGTGCGTAAGGGGaa                                       >  2:3831005/1‑97 (MQ=11)
                                    aGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCAGTGTGTGTGTTAGTGGAAGCg                                    <  2:3655366/100‑1 (MQ=33)
                                    aGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCAGTGTGTGTGTTAGTGGAAGCg                                    <  1:2575325/100‑1 (MQ=33)
                                      tACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCTCAGAGCCTGAATCAGTGTGTGTGTTAGTGGAAGCGTc                                  <  1:1897904/100‑1 (MQ=18)
                                      tACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCAGTGTGTGTGTTAGTGGAAGCGTc                                  <  2:2650791/100‑1 (MQ=33)
                                        ccccGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCAGTGTGTGTGTTAGTGGAAGCGTCTg                                <  2:1053249/100‑1 (MQ=33)
                                         cccGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCAGTGTGTGTGTTAGTGGAAGCGTCTgg                               <  1:3289303/100‑1 (MQ=32)
                                         cccGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCAGTGTGTGTGTTAGTGGAAGCGTCTgg                               >  2:825060/1‑100 (MQ=32)
                                         cccGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCAGTGTGTGTGTTAGTGGAAGCGTCTgg                               <  2:1843074/100‑1 (MQ=33)
                                         cccGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCAGTGTGTGTGTTAGTGGAAGCGTCTgg                               >  2:664892/1‑100 (MQ=32)
                                         cccGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCAGTGTGTGTGTTAGGGGAAGCGTCTgg                               >  2:104294/1‑100 (MQ=18)
                                          ncGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCAGTGTGTGTGTTAGTGGAAGCGTCTGGa                              >  1:3094184/2‑100 (MQ=17)
                                          ccGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCAGTGTGTGTGTTAGTGGAAGCGTCTGGa                              <  2:2961160/100‑1 (MQ=32)
                                          ccGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCAGTGTGTGTGTTAGTGGAAGCGTCTGGa                              <  2:2743119/100‑1 (MQ=33)
                                          ccGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCAGTGTGTGTGTTAGTGGAAGCGTCTGGa                              <  1:3630531/100‑1 (MQ=32)
                                          ccGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCAGTGTGTGTGTTAGTGGAAGCGTCTGGa                              >  1:7831/1‑100 (MQ=32)
                                           cGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGACTGAATCAGTGTGTGTGTTAGTGGAAGCGACTGGaa                             >  1:2984638/1‑100 (MQ=12)
                                             ttccgatctaaTCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCAGTGTGTGTGTTAGTGGAAGCGTCTGGAAAg                           <  2:3078819/91‑1 (MQ=255)
                                              ggAAAAGAAATCAACCGAGATTCCCTTATTAGCGGTGAGCGAAAGGGGAGGAGCCGAGAGCCTGAATCAGTGTGTGTGTTAGTGGAAGCGTCTGGAAAgg                          <  1:782539/100‑1 (MQ=11)
                                              ggAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCAGTGTGTGTGTTAGTGGAAGCGTCTGGAAAgg                          <  2:3910519/100‑1 (MQ=32)
                                              ggAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCAGTGTGTGTGTTAGTGGAAGCGTCTGGAAAgg                          <  2:1514813/100‑1 (MQ=32)
                                              ggAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCAGTGTGTGTGTTAGTGGAAGCGTCTGGAAAgg                          <  2:1980342/100‑1 (MQ=32)
                                                 aaaGAAATCAACCGAGATTCCCCAAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCAGTGTGTGTGTTAGTGGAAGCGTCTGGAAAGgcgc                       >  2:1162096/1‑100 (MQ=18)
                                                  aaGAAATCAACCGAGATTCCGCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCAGTGTGTGTGTTAGTGGAAGCGTCGGGAAAGgcg                        >  2:2391046/1‑98 (MQ=16)
                                                  aaGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCAGTGTGTGTTTTAGTTTAAGCGTCTGGAAAGgcgcg                      <  2:3804650/100‑1 (MQ=255)
                                                  aaGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCAGTGTGTGTGTTAGTGGAAGCGTCTGGAAAGgcgcg                      <  1:3200333/100‑1 (MQ=32)
                                                    gAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTTAATCAGTGTGTGTGTTAGTGGAAGCGTCTGGAAAGgcgcgc                     <  2:601637/99‑1 (MQ=17)
                                                    gAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCAGTGTGTGTGTTAGTGGAAGCGTGTGGAAAGgc                         >  2:2663058/1‑95 (MQ=17)
                                                    gAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCAGTGTGTGTGTTAGTGGAAGCGTCTGGAAAGGcgcgcg                    <  2:79144/100‑1 (MQ=33)
                                                      aaTCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCAGTGTGTGTGTTAGTGGAAGCGTCTGGAAAgagatcggaa                  >  1:3078847/1‑91 (MQ=255)
                                                      aaTCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCAGTGTGTGTATTAGTGGAAGCGTCTGGAAAGGCGCGCGAt                  >  1:2306775/1‑100 (MQ=17)
                                                        tCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCAGTGTGTGTGTTAGTGGAAGCGTCTGGAAAGGCGCGCGATAc                <  1:2095967/100‑1 (MQ=32)
                                                        cgatctgagaTTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCAGTGTGTGTGTTAGTGGAAGCGTCTGGAAAGGCGCGCGATAc                <  1:882301/94‑1 (MQ=12)
                                                          aaCCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCAGTGTGTGTGTTAGTGGAAGCGTCTGGAAAGGCGCGCGATACAg              >  2:3417140/1‑100 (MQ=33)
                                                          aaCCAAGATTCACCTAGTAGCGGCGAGCGAAGGGGGAGGAGACCATAGGCTGAAACAGTGAGTGTGTTAGCGGAAGCGTATGAAAGGGCGCGCGATACa               >  2:2146108/1‑99 (MQ=2)
                                                           aCCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCAGTGTGTGTGTTAGTGGAAGCGTCTGGAAAGGCGCGCGATACAgg             <  2:2955746/100‑1 (MQ=33)
                                                            ccGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCAGTGTGTGTGTTAGTGGAAGCGTCTGGAAAGGCGCGCGATACAggg            >  1:2069281/1‑100 (MQ=33)
                                                              gagaTTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCAGTGTGTGTGTTAGTGGAAGCGTCTGGAAAGGCGCGCGATACAGGGTg          >  2:2576464/1‑100 (MQ=33)
                                                               cgatctccccAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCAGTGTGTGTGTTAGTGGAAGCGTCTGGAAAGGCGCGCGATACAGGGTGa         <  1:8195/94‑1 (MQ=12)
                                                                   tCCCCCAGTAGCGGCGAGCAAAAGGGGAGGAGCCCAGAGCCGGAATCAGTGTGTGTGTTAGTGGAAGAGTCTGGAAAGGCGCGCGATACAGGGTGACAGc     >  2:1781094/1‑100 (MQ=11)
                                                                    cccccAGTNGCGGCGAGCGAACGGGGNGGAGNCCNGANCCTGAANCAGTGTGTGTGTTAGTGGAAGCGTCTGGAAAGGCGCGCGATACAGGGTNACAGcc    >  1:2956349/1‑100 (MQ=255)
                                                                    cccccAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCAGTGTGTGTGTTAGTGGAAGCGTCTGGAAAGGCGCGCGATACAGGGTGACAGcc    >  1:3303118/1‑100 (MQ=32)
                                                                    cccccAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCAGTGTGTGTGTTAGTGGAAGCGTCTGGAAAGGCGCGCGATACAGGGTGACAGcc    >  1:2815540/1‑100 (MQ=33)
                                                                     ccccAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCAGTGTGTGTGTTAGTGGAAGCGTCTGGAAAGGCGCGCGATACAGGGTGaagatcg   >  2:8195/1‑94 (MQ=16)
                                                                     ccccAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCAGTGTGTGTGTTAGTGGAAGCGTCTGGAAAGGCGCGCGATACAGGGTGACAGccc   >  1:495875/1‑100 (MQ=33)
                                                                     ccccAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCAGTGTGTGTGTTAGTGGAAGCGTCTGGAAAGGCGCGCGATACAGGGTGACAGccc   >  1:1920363/1‑100 (MQ=33)
                                                                     ccccAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCAGTGTGTGTGTTAGTGAAAGCGTCTGGAAAGACGCGCGATACAGGGTGACAGacc   >  1:731081/1‑100 (MQ=255)
                                                                      cccAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCAGTGTGTGTGTTAGTGGAAGCGTCTGGAAAGGCGCGCGATACAGGGTGACAGcccc  <  2:2839090/100‑1 (MQ=32)
                                                                      cccAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCAGTGTGTGTGTTAGTGGAAGCGTCTGGAAAGGCGCGCGATACAGGGTGACAGcccc  <  2:7831/100‑1 (MQ=33)
                                                                        |                                                                                                 
GGTTAATGAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCAGTGTGTGTGTTAGTGGAAGCGTCTGGAAAGGCGCGCGATACAGGGTGACAGCCCC  >  NC_000913/225926‑226095

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.