New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 1852545 =NA (NA)14 (0.110) 9/156 NT NA intergenic (+17/+76) pncA/ydjE nicotinamidase/pyrazinamidase/putative MFS sugar transporter, membrane protein
?NC_000913 1852562 = NA (NA)noncoding (1/36 nt) REP132 (repetitive extragenic palindromic) element; contains 1 REP sequences REP132 (repetitive extragenic palindromic) element; contains 1 REP sequences

Only 100 of 122 total aligned reads displayed.

ACAGTGCGCACGCGTTTATGGAGATGTCAGCAGCTGGGGCAACGCTATATACGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAACGAAAGATTTAATTCACCTCAGAAATCTCTTC  >  NC_000913/1852446‑1852644
                                                                                                   |                                                                                                   
gcggaaggtgtcgttggaagagatttctgaggtgaattaaatctttcgttgatggcatcaattgccagatgtgccactgacgtgttttatttggcctaca                                                                                                     >  1:765013‑M1/100‑100 (MQ=255)
gcggaaggtgtcgttggaagagatatctgaggtgaattaaatctttcgttgatggcatcaattgccagatgtgccactgacgtgttttatttggcctaca                                                                                                     <  2:3119283‑M1/1‑1 (MQ=255)
   gTGCGCACGCGTTTATGGAGATGTCAGCAGCTGGGGCAACGCTATATACGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAAtt                                                                                                  >  1:2863850/1‑100 (MQ=255)
   gTGCGCACGCGTTTATGGAGATGTCAGCAGCTGGGGCAACGCTATATACGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAAtt                                                                                                  >  1:2029325/1‑100 (MQ=255)
    tGCGCACGCGTTTATGGAGATGTCAGCAGCTGGGGCAACGCTATATACGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTc                                                                                                 <  1:3536799/100‑1 (MQ=255)
      cgcACGCGTTTATGGAGATGTCATCAGCTGGGGCAACGCTATATTCGCTGGCTGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCtn                                                                                               <  1:3541145/100‑2 (MQ=255)
      cgcACGCGTTTATGGAGATGTCAGCAGCTGGGGCAACGCTATATACGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTg                                                                                               <  2:57582/100‑1 (MQ=255)
        cACGCGTTTATGGAGATGTCAGCAGCTGGGGCAACGCTATATACGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTa                                                                                             >  2:3855015/1‑100 (MQ=255)
         aCGCGTTTATGGAGATGTCAGCAGCTGGGGCAACGCTATATACGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTa                                                                                             <  2:1793610/99‑1 (MQ=255)
         aCGCGTTTATGGAGATGTCAGCAGCTGGGGCAACGCTATATACGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTAc                                                                                            <  2:81103/100‑1 (MQ=255)
           gcgTTTATGGAGATGTCAGCAGCTGGGGCAACGCTATATACGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTg                                                                                          >  2:3779466/1‑100 (MQ=255)
           gcgTTTATGGAGATGTCAGCAGCTGGGGCAACGCTATATACGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTg                                                                                          <  2:211486/100‑1 (MQ=255)
               ttATGGAGATGTCAGCAGCTGGGGCAACGCTATATACGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCa                                                                                       >  1:778323/1‑99 (MQ=255)
                tATGGAGATGTCAGCAGCTGGGGCAACGCTATATACGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTAAGCTGGCCTACAATTCTGTACTGGCAt                                                                                      >  2:3459409/1‑99 (MQ=255)
                  tGGAGATGTCAGCAGCTGGGGCAACGCTATATACGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGt                                                                                   >  1:1260076/1‑100 (MQ=255)
                  tGGAGATGTCAGCAGCTGGAGCAACACTATATACGCTGGCAGAATGGGAAGAGACACAGGAGTAATTTTACGCTCGCCTACAATTCTGTACTAGCATTg                                                                                    >  2:1852714/1‑99 (MQ=255)
                     gatttctgaggtgaattaaatctttcgttgatggcatcaattgccagatgtgccactgacgtgttttatttggcctacAATTCTGTACTGGCATTGTAgg                                                                                >  1:2853430‑M1/79‑100 (MQ=255)
                     agaTTTCAGCAGCTGGGGCAACGCTATATACGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAgg                                                                                <  1:1298941/100‑1 (MQ=255)
                     agaTGTCAGCAGCTGGGGCAACGCTATATACGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAgg                                                                                <  2:851071/100‑1 (MQ=255)
                     agaTGTCAGCAGCTGGGGCAACGCTATATACGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAgg                                                                                <  1:110295/100‑1 (MQ=255)
                      gaTGTCAGCAGCTGGGGCAACGCTATATACGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGc                                                                               <  1:3789657/100‑1 (MQ=255)
                      atttctgaggtgaattaaatctttcgttgatggcatcaattgctagatgtgccactgacgtgttttatttggcctacAATTCTGTACTGGCATTGTAGGc                                                                               >  1:2237669‑M1/78‑100 (MQ=255)
                      atttctgaggtgaattaaatctttcgttgatggcatcaattgccagatgtgccactgacgtgttttatttggcctacAATTCTGTACTGGCATTGTAGGc                                                                               >  1:2088623‑M1/78‑100 (MQ=255)
                       tttctgaggtgaattaaatctttcgttgatggtatcaattgccagatgtgccactgacgtgttttatttggcctacAATTCTGTACTGGCATTGTAGGcc                                                                              >  2:1919947‑M1/77‑100 (MQ=255)
                       aTGTCTGTAGTTGGGGCAACGCTATATATGCGGGCAGACTGGGAAGAGACAAAGGGGTAATTTTACGCTGGCCTACAATTCTGTACGGGCATTGTAGGcc                                                                              <  2:3170894/100‑1 (MQ=255)
                        ttctgaggtgaattaaatctttcgttgatggcatcaattgccagatgtgccactgacgtgttttatttggcctacAATTCTGTACTGGCATTGTAGGCCa                                                                             >  1:1868089‑M1/76‑100 (MQ=255)
                         tctgaggtgaattaaatctttcgttgatggcatcaattgccagatgtgccactgacgtgttttatttggcctacAATTCTGTACTGGCATTGTAGGCCaa                                                                            >  2:3164396‑M1/75‑100 (MQ=255)
                         gTCAGCAGCTGGGGCAACGCTATATACGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCaa                                                                            >  2:2612705/1‑100 (MQ=255)
                         gTCAGCAGCTGGGGCAACGCTATATACGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCaa                                                                            <  1:422796/100‑1 (MQ=255)
                          ctgaggtgaattaaatctttcgttgatggcatcaattgccagatgtgccactgacgtgttttatttggcctacAATTCTGTACTGGCATTGTAGGCCaaa                                                                           >  2:25284‑M1/74‑100 (MQ=255)
                           tgaggtgaattaaatctttcgttgatggcatcaattgccagatgtgccactgacgtgttttatttggcctacAATTCTGTACTGGCATTGTAGGCCAAAt                                                                          >  2:672153‑M1/73‑100 (MQ=255)
                           cagcagCTGGGGCAACGCTATATACGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAAt                                                                          >  1:2873027/1‑100 (MQ=255)
                           cagcagCGGGGGCAACGCTATATACGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAAt                                                                          <  2:28050/100‑1 (MQ=255)
                            agcagcTGGGGCAACGCTATATACGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATa                                                                         <  1:2311522/100‑1 (MQ=255)
                            agcagcTGGGGCAACGCTATATACGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATa                                                                         <  1:716113/100‑1 (MQ=255)
                            agcagcTGGGGCAACGCTATATACGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATa                                                                         >  1:1709632/1‑100 (MQ=255)
                            agcagcTGGGGCAACGCTATATACGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATa                                                                         >  1:2854171/1‑100 (MQ=255)
                             gcagcTGGGGCAACGCTATATACGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATaa                                                                        <  2:338228/100‑1 (MQ=255)
                               agcTGGGGCAACGCTATATACGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATaaaa                                                                      >  1:1512569/1‑100 (MQ=255)
                                gcTGGGGCAACGCTATATACGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGTCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAac                                                                     <  2:1618571/100‑1 (MQ=255)
                                gcTGGGGCAACGCTATATACGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAac                                                                     <  1:3189916/100‑1 (MQ=255)
                                gcTGGGGCAACGCTATATACGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAac                                                                     >  1:3062319/1‑100 (MQ=255)
                                 cTGGGGCAACGCTATATACGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAaca                                                                    >  2:3709127/1‑100 (MQ=255)
                                 cTGGGGCAACGCTATATACGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAaca                                                                    >  1:944137/1‑100 (MQ=255)
                                   ggggCAACGCTATATACGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAAAACg                                                                  >  2:824781/1‑100 (MQ=255)
                                     ggCAACGCTATATACGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTc                                                                >  1:1858737/1‑100 (MQ=255)
                                      gCAACGCTATATACGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCa                                                               >  1:3336183/1‑100 (MQ=255)
                                        aaCGCTATATACGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGt                                                             >  1:423176/1‑100 (MQ=255)
                                           gCTATATACGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGc                                                          <  2:3069322/100‑1 (MQ=255)
                                            cTATATACGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGca                                                         >  1:1782123/1‑100 (MQ=255)
                                            cTATATACGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGca                                                         <  2:3216210/100‑1 (MQ=255)
                                            cTATATACGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAAAACGTAAGTgg                                                           >  2:3464578/1‑98 (MQ=255)
                                             tatataCGCTGGCAGACTGGGAAGTGTCACATGTGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGc                                                          <  2:3089338/98‑1 (MQ=255)
                                             tatataCGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGcac                                                        <  2:3792938/100‑1 (MQ=255)
                                             tagataCGCTGGCAGACTGGGAAGTGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGca                                                         <  2:1031834/96‑1 (MQ=255)
                                              atataCGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTTGCATTGTAGGCCAAATAAAACACGTCAGTGGca                                                         <  2:1030313/98‑1 (MQ=255)
                                                 taCGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCt                                                    >  2:1072198/1‑100 (MQ=255)
                                                 taCGCTCGCAGACTGGGAACAGACACAAGGATAATTTTACGCTGGCCTACAATTCTGTCCTGGCATTGTAGGCCAACTAAAAAACGTCAGTGGCACATCt                                                    >  2:1029466/1‑100 (MQ=255)
                                                   cGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTg                                                   >  1:2536188/1‑99 (MQ=255)
                                                     cTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCa                                                <  1:1086891/100‑1 (MQ=255)
                                                       ggCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAAt                                              >  1:662926/1‑100 (MQ=255)
                                                        gCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAAtt                                             >  1:2475698/1‑100 (MQ=255)
                                                        gCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGACAAATAAAACACGTCAGTGGCACATCTGGCAAtt                                             >  1:3713598/1‑100 (MQ=255)
                                                          aGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGa                                           <  1:3672700/100‑1 (MQ=255)
                                                            attgccagatgggccactgacgtgttttatttggcctacAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCaa                                               >  2:1397070‑M1/40‑94 (MQ=255)
                                                             cTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGc                                        <  1:2697558/100‑1 (MQ=255)
                                                             cTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGc                                        >  1:3815469/1‑100 (MQ=255)
                                                             cTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGc                                        <  2:3102785/100‑1 (MQ=255)
                                                             cTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACAAGTCAGTGGCACATCTGGCAATTGATGc                                        >  1:698767/1‑100 (MQ=255)
                                                              tGGGAAGAGACACAGGGGTAATTTTACGCTGGCTTATAATTTTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGcc                                       <  1:3124591/100‑1 (MQ=255)
                                                               gggAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCa                                      >  1:778294/1‑100 (MQ=255)
                                                               gggAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCa                                      <  2:2819780/100‑1 (MQ=255)
                                                                ggAAGAGACAGAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCAt                                     >  2:252707/1‑100 (MQ=255)
                                                                ggAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCAt                                     >  2:415085/1‑100 (MQ=255)
                                                                  agatgtgccactgacgtgttttatttgtcttacAATTTTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCa                                   >  1:579263‑M1/34‑100 (MQ=255)
                                                                  aaGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCGTCa                                   >  1:3609060/1‑100 (MQ=255)
                                                                  aaGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCa                                   <  2:3856840/100‑1 (MQ=255)
                                                                  aaGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCa                                   >  1:2870930/1‑100 (MQ=255)
                                                                     agaCACAGGTGTAATTTTACGCTGGCCTACAATTCTGTACTGTCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAAc                                 <  2:3769902/99‑1 (MQ=255)
                                                                      gaCACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAACGa                               >  1:2460457/1‑100 (MQ=255)
                                                                      gaCACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAACGa                               >  2:3283281/1‑100 (MQ=255)
                                                                       acacAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAACGaa                              <  1:2272425/100‑1 (MQ=255)
                                                                        cacaGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAACGaaa                             >  2:1592464/1‑100 (MQ=255)
                                                                        cacaGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAACGaaa                             >  1:2549575/1‑100 (MQ=255)
                                                                         acaGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAACGAAAg                            <  2:1365375/100‑1 (MQ=255)
                                                                             gggTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAACGAAAGAttt                        <  1:1295339/100‑1 (MQ=255)
                                                                             gggTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAACGAAAAAttt                        >  2:2978248/1‑100 (MQ=255)
                                                                              ggTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAACGAAAGATTTa                       >  2:3395896/1‑100 (MQ=255)
                                                                               gTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAACGAAAGATTTaa                      <  1:2921834/100‑1 (MQ=255)
                                                                                  aTTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAACGAAAGATTTAAtt                    >  2:1540903/1‑99 (MQ=255)
                                                                                     ttACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAACGAAAGATTTAATTCAcc                <  2:1401589/100‑1 (MQ=255)
                                                                                     ttACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAACGAAAGATTTAATTCAcc                <  2:2210055/100‑1 (MQ=255)
                                                                                        cGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAACGAAAGATTTAATTCACCTCa             <  1:2359005/100‑1 (MQ=255)
                                                                                             gCCTACAATTCTGTACTGGCATTGTAGGCTAAATAAAGCACTTCAGTGGAACATCTGGCAATTGATGCCTTAAACGAAAGATTTAATTCACCTCAGaaa         <  2:2646996/99‑1 (MQ=255)
                                                                                              cctacAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAACGAAAGATTTAATTCACCTCAGAAAtc       >  1:2157494‑M1/6‑100 (MQ=255)
                                                                                                tacAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAACGAAAGATTTAATTCACCTCAGAAAtctc     <  1:1907572‑M1/97‑1 (MQ=255)
                                                                                                tacAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAACGAAAGATTTAATTCACCTCAGAAAtctc     >  2:3053414‑M1/4‑100 (MQ=255)
                                                                                                  cAATTCTGTACTGGAAGTGTAGGCCAAATAAAACACGTCAGTGGCACATATGGCAATTGACGACATAAAAGAAAGATTTAATTCACCTCAGAAAtct      <  2:1343402‑M1/96‑1 (MQ=255)
                                                                                                   AATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTTAGTAGCACATCTGGCAATTGATGCCATCAACGAAAGATTTAATTCACCTCAGAAATCTCTTc  >  1:2962133‑M1/1‑100 (MQ=255)
                                                                                                   AATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAACGAAAGATTTAATTCACCTCAGAAATCTCTTc  >  2:3842667‑M1/1‑100 (MQ=255)
                                                                                                   |                                                                                                   
ACAGTGCGCACGCGTTTATGGAGATGTCAGCAGCTGGGGCAACGCTATATACGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAACGAAAGATTTAATTCACCTCAGAAATCTCTTC  >  NC_000913/1852446‑1852644

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.