| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3427251 | NA (NA) | 21 (0.160) | 7/168 | NT | 38.9% | noncoding (1512/1542 nt) | rrsD | 16S ribosomal RNA of rrnD operon |
| ? | NC_000913 | 4209670 = | 35 (0.250) | noncoding (1524/1542 nt) | rrsE | 16S ribosomal RNA of rrnE operon | |||||
GCAAAAGAAGTAGGTAGCTTAACCTTCGGGAGGGCGCTTACCACTTTGTGATTCATGACTGGGGTGAAGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTTCTTTGCAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACT > NC_000913/4209572‑4209768 | tagaggttttactgctcattttcatcagacaatctgtgtgagcactgcaaagtacgcttctttaaggtaaggaggtgatccaaccgcaggttcccctaCg < 2:2940346‑M2/2‑1 (MQ=255)tagaggttttactgctcattttcatcagacaatctgtgtgagcactgcaaagtacgcttctttaaggtaaggaggcgatccaaccgcaggttcccctaCg > 1:1133817‑M2/99‑100 (MQ=255) agaggttttactgctcattttcatcagtcaatctgtgtgagcactgcaaagtacgcttctttaaggtaaggaggtgatccaaccgcaggttcccctaCgg < 1:1104468‑M2/3‑1 (MQ=255) agaggttttactgctcattttcatcagacaatctgtgtgagcactgcaaagtacgcttctttaaggtaaggaggtgatccaaccgcaggttcccctaCgg < 1:2399713‑M2/3‑1 (MQ=255) agaggttttactgctcattttcatcagacaatctgtgtgagcactgcaaagtacgcttctttaaggtaaggaggtgatccaaccgcaggttcccctaCgg < 1:2361200‑M2/3‑1 (MQ=255) agaggttttactgctcattttcatcagacaatctgtgtgagcactgcaaagtacgcttctttaaggtaaggaggtgatccaaccgcaggttcccctaCgg < 2:2013306‑M2/3‑1 (MQ=255) agaggttttactgctcattttcatcagacaatctgtgtgagcactgcaaagtacgcttctttaaggtaaggaggtgatccaaccgcaggttcccctaCgg > 1:2225543‑M2/98‑100 (MQ=255) agaggttttactgctcattttcatcagacaatctgtgtgagcactgcaaagtacgcttctttaaggtaaggaggtgatccaaccgcaggttcccctaCgg < 1:1497783‑M2/3‑1 (MQ=255) agaggttttactgctcattttcatcagacaatctgtgtgagcactgcaaagtacgcttctttaaggtaaggaggtgatccaaccgcaggttcccctaCgg < 1:2834092‑M2/3‑1 (MQ=255) agaggttttactgctcattttcatcagacaatctgtgtgagcactgcaaagtacgcttctttaaggtaaggaggtgatccaaccgcaggttcccctaCgg < 2:2584337‑M2/3‑1 (MQ=255) agaggttttactgctcattttcatcagacaatctgtgtgagcactgcaaagtacgcttctttaaggtaaggaggtgatccaaccgcaggttcccctaCg < 2:2731488‑M2/2‑1 (MQ=255) agaggttttactgctcattttcatcagacaatctgtgtgagcactgcaaagtacgcttctttaaggtaaggaggtgatccaaccgcaggttcccctaCg > 1:876144‑M2/98‑99 (MQ=255) gaggttttactgcttattttcatgagacaatctgtgtgagcactgcaaagtacgcttctttaaggtaaggaggtgatccaaccgcaggttcccctaCgg < 1:1841834‑M2/3‑1 (MQ=255) gaggttttactgctcattttcatcagacaatctgtgtgagcactgcaaagtacgcttctttaaggtaaggaggtgatccaaccgcaggttcccctaCGGt < 1:469050‑M2/4‑1 (MQ=255) gaggttttactgctcattttcatcagacaatctgtgtgagcactgcaaagtacgcttctttaaggtaaggaggtgatccaaccgcaggttcccctaCGGt > 2:3364697‑M2/97‑100 (MQ=255) aggttttactgctcattttcatcagacaatctgtgtgagcactgcaaagtacgcttctttaaggtaaggaggtgatccaaccgcaggttcccctaCGGtt < 1:10051‑M2/5‑1 (MQ=255) ggttttactgctcattttcatcagacaatctgtgtgagcactgcaaagtacgcttctttaaggtaaggaggtgatccaaccgcaggttcccctaCGGtt < 2:2492456‑M2/5‑1 (MQ=255) ggtttactgctcattttcatcagacaatctgtgtgagcactgcaaagtacgcttctgtaaggtaaggaggtgatctaaccgcaggttccccgaCGGtt < 2:797169‑M2/5‑1 (MQ=255) tGAAGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCATCTCCTTACCTTAAAGAAGCGTTCTTTGCAGTGCTCACACAGATTGTCTGATAGa < 1:3655472/100‑1 (MQ=11) aggtaaggaggtgatccaaccgcaggttcccctaCGGTTGGATCACCTCCTTACCTTAAAGAACCGTTCTTTGAAATGCTCACACAGATTGTCTgatga > 2:2115892‑M2/35‑97 (MQ=255) aaGTCGTAACAAGGTAATCGTAGGTGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTTCTTGGCAGTGCTCACACAGATTGTCTGATAGaa < 1:20707/99‑1 (MQ=255) aGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTTCTTTGCAGTGCTCACACAGATTGTCTGATAGAAAg < 1:677373/100‑1 (MQ=32) gTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCTCCTTCTTACCTTAAAGAAGCGTTCTTTGCAGTGCTCACACAGATTGTCTGATAGAAAGt < 1:1185962/100‑1 (MQ=12) gTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTTCTTTGCAGTGCTCACACAGATTGTCTGATAGAAAGt > 2:1121246/1‑100 (MQ=33) gTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTTCTTTGCAGTGCTCACACAGATTGTCTGATAGAAAGt > 2:872394/1‑100 (MQ=33) gTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTTCTTTGCAGTGCTCACACAGATTGTCTGATAGAAAGt > 1:460439/1‑100 (MQ=33) gTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTTCTTTGCAGTGCTCACACAGATTGTCTGATAGAAAGt < 2:2981110/100‑1 (MQ=32) gTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGAATCACCTCCTTACCTTAAAGAAGCGTTCTTTGCAGTGCTCACACAGATTGTCTGATAGAAAGt > 2:1271441/1‑100 (MQ=17) cGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTTCTTTGCAGTGCTCACACAGATTGTCTGATAGAAAGTGa > 2:1154785/1‑100 (MQ=33) cGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTTCTTTGCAGTGCTCACACAGATTGTCTGATAGAAAGTGa < 1:2285541/100‑1 (MQ=32) cGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTTCTTTGCAGTGCTCACACAGATCGTCTGATAGAAAGTGa < 1:1828397/100‑1 (MQ=18) tAACAAGTTAACCGTAGGGGGACCTGCGTTTGGATCACCTCCTTACCTTAAAGAAGCGTTCTTTTCTGTGCTCACACAGATTGTCTGATAGAAAGTGaa > 2:3526758/1‑99 (MQ=11) tAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTTCTTTGCAGTGCTCACACAGATTGTCTGATAGAAAGTGaaa < 1:2344374/100‑1 (MQ=33) tAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTTCTTTGCAGTGCTCACACAGATTGTCTGATAGAAAGTGaaa > 1:2081379/1‑100 (MQ=32) tAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCATTCTTTGCAGTGCTCACACAGATTGTCTGATAGAAAGTGaaa > 1:741018/1‑100 (MQ=18) aggtgatccaaccgcaggttcccctaCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGCAGTGCTCACACAAATTGTctgataaaaatgagca > 1:2681444‑M2/27‑94 (MQ=255) ggtgatccaaccgcaggttcccctaCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGTAATGCTCACACAGATTGTCTGATAGAAAGTGaaaa > 1:2347922‑M2/26‑100 (MQ=255) ggtgatccaaccgcaggttcccctaCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGCAGTGCTCACACAGATTGTCTGATGAAAAGtgaata > 1:420399‑M2/26‑98 (MQ=255) gtgatccaaccgcaggttcccctaCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTTCTTTGCAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAg > 2:291315‑M2/25‑100 (MQ=255) gtgatccaaccgcaggttcccctaCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTTCTTTGCAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAg > 1:3177786‑M2/25‑100 (MQ=255) gtgatccaaccgcaggttcccctaCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGTAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAg > 1:3069706‑M2/25‑100 (MQ=255) gtgatccaaccgcaggttcccctaCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGCAGTGCTCACACAGATTGTCTGATGAAAAGtgaata > 1:739247‑M2/25‑97 (MQ=255) aCAAGGTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTTCTTTGCAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAg > 2:312292/1‑100 (MQ=32) tgatccaaccgcaggttcccctaCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGTAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGc > 1:3069579‑M2/24‑100 (MQ=255) tgatccaaccgcaggttcccctaCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGCAGTGCTCACACAGATTGTCTGAT‑GAaaatgagcagt > 2:2033233‑M2/24‑94 (MQ=255) cAAGGTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTTCTTTGCAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGc > 2:1115117/1‑100 (MQ=33) gatccaaccgcaggttcccctaCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTTCTTTGCAGTGCTCCCACAGATTGTCTGATAGGAAGTGAAAAGCa > 2:3656317‑M2/23‑100 (MQ=255) gatccaaccgcaggttcccctaCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTTCTTTGCAGTGCTCACAAAGATTGTCTGATAGGAAGTGAAAAGCa > 1:829058‑M2/23‑100 (MQ=255) gatccaaccgcaggttcccctaCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGTAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCa > 1:2443500‑M2/23‑100 (MQ=255) gatccaaccgcaggttcccctaCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGTAGTGCTCACACAGATGGTCTGTTAGAAAGTGAAAAGCa > 1:3912892‑M2/23‑100 (MQ=255) gatccaaccgcaggttcccctaCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGCAGTGCTCACACAGATTGTCTGATGAAAAGTGAATAGCa > 2:2884159‑M2/23‑100 (MQ=255) atccaaccgcaggttcccctaCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGTAGTGCTCACACAGAGTGGCTGATAGAAAGTGAAAAGCaa > 1:3126635‑M2/22‑100 (MQ=255) atccaaccgcaggttcccctaCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGCAGTGCTCACACAGATTGTCTGAt‑gaaaatgagcagtaaa > 2:3404757‑M2/22‑92 (MQ=255) aGGTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTTCTTTGCAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCaa > 2:2616454/1‑100 (MQ=32) aGGTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTTCTTTGCAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCaa < 1:2537689/100‑1 (MQ=33) aGGTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTTCTTTGCAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCaa > 1:3402255/1‑100 (MQ=32) aGGTAACCGTAGGGGAACCAGCGGTTGGATCACCTCCTTACCTTAAAGAAGCATTCTTTGCAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCaa > 2:169943/1‑100 (MQ=12) tccaaccgcaggttcccctaCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTTCTTTGCACTGCTCACACAGATTGTCTGATAGAAAGTGAAAATCAAg > 1:3905560‑M2/21‑100 (MQ=255) ggTAACCGTCGGGGAACCTGCAGTTGAATCACCTCCTTACCTTAAAGAAGCGTCCTTTGCAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAACAAg > 2:3878581/1‑100 (MQ=11) tAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTTCTTTGCAGTGCTCACACAGATTGTATGATAGAAAGTGAAAAGCAAGGc > 1:932850/1‑100 (MQ=18) tAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTTCTTTGCAGTGCTCAAACAGATTGTCTGATAGAAAGTGAAAAGCAAGGc > 2:654462/1‑100 (MQ=18) caaccgcaggttcccctaCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTTCTTTGCAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGc > 2:382203‑M2/19‑100 (MQ=255) caaccgcaggttcccctaCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGTAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAg > 1:584791‑M2/19‑98 (MQ=255) aaccgcaggttcccctaCGGTTGGATCAACTCCTTACCTTAAAGAAGCGTTCTTTGCAGTGCTCAAACACATTGTCTGATAGAAAGTGAAAAGCAAGGCg > 2:3812022‑M2/18‑100 (MQ=255) aaCCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTTCTTTGCAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCg < 2:3761174/100‑1 (MQ=33) gTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTTCTTTGCAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTCtt > 2:2907898/1‑100 (MQ=33) tAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTTCTTTGCAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTCTTg > 2:1671880/1‑100 (MQ=32) aGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTTCTTTGCAGTGCTCGCACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTCTTgt < 2:69876/100‑2 (MQ=17) aGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTTCTTTGCAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTCTTGc > 1:599305/1‑100 (MQ=32) gggtAACCTGCGGTTGGATCACCTCCTTACCTTAAACAAGCGTTCTTTGCAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTCTTGc < 2:272158/99‑1 (MQ=12) gggAACCTGCGGTTGGATCACCTCCTTACCTTAAAGATGCGTTCTTTGTAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTCTTGCg < 1:127836/99‑1 (MQ=12) gggAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTTCTTTGCAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTCTTGCGa < 2:518515/100‑1 (MQ=33) gAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTTCTTTGCAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTCTTGCGAAg < 1:1779920/100‑1 (MQ=33) aaCCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTTCTTTGTAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTCTTGCGAAGc < 1:309389/100‑1 (MQ=17) aCCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTTCTTTGCAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTCTTGCGAAGc < 1:358739/99‑1 (MQ=33) aCCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTTCTTTGCAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTCTTGCGAAGCa < 1:87040/100‑1 (MQ=32) ccTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTTCTTTGCAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTCTTGCGAAGCAg > 1:1231486/1‑100 (MQ=33) cTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTTCTTTGCAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGa > 2:2361709/1‑100 (MQ=33) cTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTTCTTTGCAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGa > 2:1357876/1‑100 (MQ=32) cTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTTCTTTGCAGTGCTCACACAGATAGTCTGATAGAAAGTGAAAAACAAGGCAACCTGCGAAGCAGa > 1:1442527/1‑100 (MQ=11) tGCGGTTGGATCATCTCCTTACCTTATATATGCGTTCTTTGCAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGAc < 1:1036976/100‑1 (MQ=11) tGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTTCTTTGCAGTGCTCACACAGATTGTCTGATAGAAAATGAAAAGCAAGGCGTCTTGCGAAGCAGAc > 1:3330117/1‑100 (MQ=18) tGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTTCTTTGCAGTGCTCACACAGATTGACAGATAGAAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGAc > 1:1039617/1‑100 (MQ=12) cGGTTTGATCAGCTACTTATCTTAAAGAAGCATTCTTTGCAGCTCTCATACAGATTGTCTGATAGAAAGTAAAAAGCAAGCCGTCTTGCGCAGCAGACt > 2:1113296/1‑99 (MQ=11) | GCAAAAGAAGTAGGTAGCTTAACCTTCGGGAGGGCGCTTACCACTTTGTGATTCATGACTGGGGTGAAGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTTCTTTGCAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACT > NC_000913/4209572‑4209768 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |