New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 3620220NA (NA)20 (0.150) 7/166 NT 100% coding (1029/4236 nt) rhsB Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
?NC_000913 = 3620255 0 (0.000)coding (1064/4236 nt) rhsB Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor

TGGCGGTGGTGTATGACCGTAGTGGCAAACAGGTGCGCAGCTTTACTTACGATGATAAATACCGGGGCCGGATGGTGGCGCACCGTCACACGGGCCGGCCGGAAATCCGTTACCGTTACGACAGCGACGGGCGGGTGACAGAACAGCTAAACCCGGCAGGCTTAAGCTACACGTATCAGTATGAGAAAGACCGCATCA  >  NC_000913/3620156‑3620353
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tGGCGGTGGTGTATGACCGTAGTGGCAAACAGGTGCGCAGCTTTACTTACGATGATAAATACCGGGGCCGGATGGTGGCGCACCGTCACACGGGCCGGCC                                                                                                    <  2:2292233‑M2/100‑1 (MQ=255)
tGGCGGTGGTGTATGACCGTAGTGGCAAACAGGTGCGCAGCTTTACTTACGATGATAAATACCGGAGCCGGATAGTGGCGCACCGTCACACGGGCCGGCC                                                                                                    <  1:703316‑M2/100‑1 (MQ=255)
 ggCGGTGGTGTATGACCGTAGTGGCAAACAGGTGCGCAGCTTTACTTACGATGATAAATACCGGGGCCGGATGGTGGCGCACCGTCACACGGGCCGGCC                                                                                                    >  2:2814174‑M2/1‑99 (MQ=255)
 ggCGGTGGTGTATGACCGTAGTGGCAAACAGGTGCGCAGCTTTACTTACGATGATAAATACCGGGGCCGGATGGTGGCGCACCGTCACACGGGCCGGCC                                                                                                    <  2:2825481‑M2/99‑1 (MQ=255)
    ggtggtGTATGACCGTAGTGGCAAACAGGTGCGCAGCTTTACTTACGATGATAAATACCGGGGCCGGATGGTGGAGCACCGTCACACGGGCCGGCCccgg                                                                                                <  1:186738‑M2/100‑5 (MQ=255)
                                                     gatAAATACCGGGGCCGGATGGTGGCGCACCGTCACACGGGCCGGCCccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcat                                               <  2:1762643‑M2/100‑54 (MQ=255)
                                                             ccGGGGCCGGATGGTGGCGCACCGTCACACGGGCCGGCCccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccacc                                       <  2:312791‑M2/100‑62 (MQ=255)
                                                             ccGGGGCCGGATGGTGGCGCACCGTCACACGGGCCGGCCccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccacc                                       <  2:3444650‑M2/100‑62 (MQ=255)
                                                             ccGGGGCCGGATGGTGGCGCACCGTCACACGGGCCGGCCccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccacc                                       <  1:3192268‑M2/100‑62 (MQ=255)
                                                             ccGGGGCCGGATGGTGGCGCACCGTCACACGGGCCGGCCccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccacc                                       <  1:3524764‑M2/100‑62 (MQ=255)
                                                             ccGGGGCCGGATGGTGGCGCACCGTCACACGGGCCGGCCccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccacc                                       <  1:3524891‑M2/100‑62 (MQ=255)
                                                             ccGGGGCCGGATGGTGGCGCACCGTCACACGGGCCGGCCccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccacc                                       <  2:1960333‑M2/100‑62 (MQ=255)
                                                             ccGGGGCCGGATGGTGGCGCACCGTCACACGGGCCGGCCccggtatttatcatcgtaagtaaagctgcacacctgtttgccactacggtcatacaccacc                                       <  1:1525527‑M2/100‑62 (MQ=255)
                                                              cGGGGCCGGATGGTGGCGCACCGTCACACGGGCCGGCCccggtatttatcatcgtaagtaaagatgcgaacctgtttgccactacggtcatacaccaccg                                      <  1:189965‑M2/100‑63 (MQ=255)
                                                               ggggCCGGATGGTGGCGCACCGTCACACGGGCCGGCCccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgc                                     <  1:2341604‑M2/100‑64 (MQ=255)
                                                               ggggCCGGATGGTGGCGCACCGACACACGGGCCGGCCccgatatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgc                                     <  2:3889267‑M2/100‑64 (MQ=255)
                                                                gggCCGGCTGGCGGCGCACCGTCACACGGGCCGGCCccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgcc                                    <  2:2043159‑M2/100‑65 (MQ=255)
                                                                gggCCGGATGGTGGCGCACCGTCACACGGGCCGGCCccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgcc                                    <  2:2120791‑M2/100‑65 (MQ=255)
                                                                gggCCGGATGGTGGCGCACCGTCACACGGGCCGGCCccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgcc                                    <  2:1132332‑M2/100‑65 (MQ=255)
                                                                 ggCCGGATGGTGGCGCACCGTCACACGGGCCGGCCccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgcca                                   <  2:1585075‑M2/100‑66 (MQ=255)
                                                                 ggCCGGATGGTGGCGCACCGTCACACGGGCCGGCCccggtatttatcatcgtaagtaaaaatgcgcacatgtttgccactacgatcatacaccacaccc                                    <  1:2700582‑M2/99‑65 (MQ=255)
                                                                 ggCCGGATGGTGGCGCACCGTCACCATCCGGCCccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgccagt                                 <  1:2214243‑M2/100‑68 (MQ=255)
                                                                  gCCGGATGGTGGCGCACCGTCACACGGGCCGGCCccgttatttctcatcgtaagtaaaactgcgcacctgtctgccactacggtcatacaccaccgcc                                    <  2:3325075‑M2/98‑65 (MQ=255)
                                                                  gCCGGATGGTGGCGCACCGTCACACGGGCCGGCCccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgccag                                  <  1:86495‑M2/100‑67 (MQ=255)
                                                                  gCCGGATGGTGGCGCACCGTCACACGGGCCGGCCccggtatttatcatcgtaagtaaagctacgcacctgtttgccactacggacatacaccaccgccag                                  <  1:2583784‑M2/100‑67 (MQ=255)
                                                                                             tctcaccccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgccagttcgccgcgtggcgtccagccatagcg       <  2:2488046‑M2/95‑94 (MQ=255)
                                                                                              ccggccccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgccagttcgccgcgtggcgtccagccatagcgc      <  1:1992802‑M2/100‑95 (MQ=255)
                                                                                              ccggccccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgccagttcgccgcgtggcgtccagccatagcgc      <  1:2706125‑M2/100‑95 (MQ=255)
                                                                                              ccggccccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaacgccagttcgccgcgtggcgtccagccatagcgc      <  2:3575630‑M2/100‑95 (MQ=255)
                                                                                               cggccccggtatttatcatcgtaagtaaagctgcgctcctgtttgccactacggtcatacaccaccgccagttcgccgcgtggcgtccagccatagcgca     >  2:807817‑M2/1‑5 (MQ=255)
                                                                                                ggccccggtatttatcatcgtaagtaaagctgcgcacctgttttccactacggtcatacaccaccgccatttcgccgcgtggtgtccagccatagcgcac    >  2:3032519‑M2/1‑4 (MQ=255)
                                                                                                ggccccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgccagttcgccgcgtggcgtccagccatagcgcac    >  2:1299160‑M2/1‑4 (MQ=255)
                                                                                                ggccccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgccagttcgccgcgtggcgtccagccatagcgcac    >  2:2206612‑M2/1‑4 (MQ=255)
                                                                                                ggccccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgccagttcgccgcgtggcgtccagccatagcgcac    >  1:3816707‑M2/1‑4 (MQ=255)
                                                                                                 gccccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgccagttcgccgcgtggcgtccagccatagcgcacc   >  2:662008‑M2/1‑3 (MQ=255)
                                                                                                 gccccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgccagttcgccgcgtggcgtccagccatagcgcacc   <  1:1443725‑M2/100‑98 (MQ=255)
                                                                                                 gccccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgccagttcgccgcgtggcgtccagccatagcgcacc   >  2:843154‑M2/1‑3 (MQ=255)
                                                                                                  ccccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgccagttcgccgcgtggcgtccagccatagcgcacca  >  2:3381473‑M2/1‑2 (MQ=255)
                                                                                                  ccccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgcaagttcgccgcgtggcgtccagccatagcgcacca  <  1:169269‑M2/100‑99 (MQ=255)
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TGGCGGTGGTGTATGACCGTAGTGGCAAACAGGTGCGCAGCTTTACTTACGATGATAAATACCGGGGCCGGATGGTGGCGCACCGTCACACGGGCCGGCCGGAAATCCGTTACCGTTACGACAGCGACGGGCGGGTGACAGAACAGCTAAACCCGGCAGGCTTAAGCTACACGTATCAGTATGAGAAAGACCGCATCA  >  NC_000913/3620156‑3620353

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.