New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 4148478NA (NA)17 (0.130) 8/164 NT NA noncoding (49/82 nt) REP308 (repetitive extragenic palindromic) element; contains 2 REP sequences REP308 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 = 4148511 NA (NA)noncoding (82/82 nt) REP308 (repetitive extragenic palindromic) element; contains 2 REP sequences REP308 (repetitive extragenic palindromic) element; contains 2 REP sequences

Only 100 of 224 total aligned reads displayed.

CATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTACCAAT  >  NC_000913/4148412‑4148609
                                                                                                   |                                                                                                  
cATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGC                                                                                                    <  1:3402427‑M2/100‑1 (MQ=255)
  ttGCGGGAGTTGTATTGTCGGTTGTGTTGTAATCGCTTTATTTAGCTTACTGCCGCGATCTGTAGGCAGGATGCGACGCTTGACGCGTCTTATCCGGcc                                                                                                   <  1:1213221/99‑2 (MQ=9)
    gCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAAt                                                                                                >  1:2677993/1‑100 (MQ=255)
     cGGCAGTTGTATTGCCGGATGTGGCGTAAAAGCCTTATCCAGCCTACCGCCGCGATCTTTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAAt                                                                                                >  2:2338158/1‑99 (MQ=255)
         aGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAgcgc                                                                                           <  2:2106719/100‑1 (MQ=255)
          gTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGcc                                                                                          <  2:2025674/100‑1 (MQ=255)
             gTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTgg                                                                                       >  1:2614781/1‑100 (MQ=255)
              tATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGc                                                                                      >  1:1462765/1‑100 (MQ=255)
                ttGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTg                                                                                    >  1:2940715/1‑100 (MQ=255)
                  gCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGAt                                                                                  >  1:376318/1‑100 (MQ=255)
                  gCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGAt                                                                                  >  1:2921635/1‑100 (MQ=255)
                  gCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGAt                                                                                  >  2:3574562/1‑100 (MQ=255)
                  gCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGCCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGTGCATGGCTGAt                                                                                  >  1:3201035/1‑100 (MQ=255)
                       aTGTGGCGTAAACGCCTTATCCAGCCTACCTCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTa                                                                             <  1:2506377/100‑1 (MQ=255)
                         gtgGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACt                                                                           <  2:2871627/100‑1 (MQ=255)
                          tgGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTg                                                                          >  2:2673922/1‑100 (MQ=255)
                          tgGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTg                                                                          <  2:1448632/100‑1 (MQ=255)
                           ggCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGa                                                                         >  1:1676518/1‑100 (MQ=255)
                           ggCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGACGCATCAGGCAAATAGCGCCTGGCTGATAATTACTGa                                                                         >  1:1619168/1‑100 (MQ=255)
                               tAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTAc                                                                     >  2:2217976/1‑100 (MQ=255)
                                aaaCGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTAcc                                                                    >  1:2770164/1‑100 (MQ=255)
                                  aCGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTAATTACCCa                                                                  >  1:1568711/1‑100 (MQ=255)
                                   cGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTAGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCa                                                                  >  1:2396159/1‑99 (MQ=255)
                                     cccgaTCCAGCCGCCCGCCTCGATCTGGATGCGGGAGAAGACGTCTCACGCGTCGCTTCCGTCAAATAGCGCCTGGCTTATAATTACTCATTATTCAcc                                                                <  2:315279/95‑1 (MQ=255)
                                      cTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCAcc                                                                <  2:1332640/98‑1 (MQ=255)
                                       ttATCCAGTCTAAGGCCGCGATCTGTTGTCCGGATTAGACGCGTCAAGTGTGGCATCCGGAAAATGGCTTTTGTCTGATAATTACTGATTACCCAc                                                                 <  2:1475444/96‑1 (MQ=255)
                                       ttATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGa                                                             >  2:1273600/1‑100 (MQ=255)
                                         aTCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATc                                                           >  1:2590218/1‑100 (MQ=255)
                                          tCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCAGATCg                                                          >  1:2342230/1‑100 (MQ=255)
                                           ccAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGc                                                         >  1:590841/1‑100 (MQ=255)
                                           ccAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGc                                                         >  2:3747595/1‑100 (MQ=255)
                                            cAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGcc                                                        >  2:396275/1‑100 (MQ=255)
                                              gCCTTCCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCAt                                                      <  1:410298/100‑1 (MQ=255)
                                              gCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCa                                                       >  2:556122/1‑99 (MQ=255)
                                              gCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGAGCCTGGCTGATAATTACTGATTACTCACCTGATc                                                           >  2:2688749/1‑95 (MQ=255)
                                                ctcccgccgCGATCTGTAGGCCGGATGATACTCGTCAAGCGTTGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATa                                                     <  2:3485576/96‑1 (MQ=255)
                                                 tACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAgg                                                   <  2:2239724/100‑1 (MQ=255)
                                                   ccgccgCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGc                                                 >  1:3336370/1‑100 (MQ=255)
                                                     gccgcGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAg                                               >  2:1672157/1‑100 (MQ=255)
                                                     gccgcGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAg                                               >  1:3544817/1‑100 (MQ=255)
                                                        gcgATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCctacagatcgcggcggtaggctggataaggcgtttacgccacatccggcaatacaa                                            <  2:3634036‑M2/100‑57 (MQ=255)
                                                        gcgATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAgtgt                                            >  1:204427/1‑100 (MQ=255)
                                                         tcttCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAgtgtg                                           <  2:3256949/97‑1 (MQ=255)
                                                         cgATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAgtgtg                                           <  2:105835/100‑1 (MQ=255)
                                                          gATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGTATCCTGTAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAgtgtgt                                          <  1:264279/100‑1 (MQ=255)
                                                           aTCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTc                                         <  1:3292496/100‑1 (MQ=255)
                                                           aTCTGTAGGCCGGATAAGACAAGTCAAGCATCACATACTGCAAATAGTGCCTGGCTGATAATTACTGATTACCCACCGGATCGCAATAGGGCAgag                                             >  2:3325489/1‑94 (MQ=255)
                                                            tCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGTCATAGGGCAGTGTGTCg                                        <  2:1831659/100‑1 (MQ=255)
                                                            cgatctggCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTCg                                        <  1:3019460/94‑1 (MQ=255)
                                                             cTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTCGt                                       >  1:2115384/1‑100 (MQ=255)
                                                              tGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTTATAATTACTGATTACCCACTTGATCGCCATAGGGCAgtg                                             <  2:2355083/93‑1 (MQ=255)
                                                              tGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTCGTa                                      >  1:74230/1‑100 (MQ=255)
                                                               gTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATAGCAATAGGGAAGTGTGTCGTaa                                     >  1:879329/1‑100 (MQ=255)
                                                                tAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTCGTAAt                                    <  2:1532972/100‑1 (MQ=255)
                                                                  ggCCGGATAAGACGCGTCAAGCGTCGCATCCGGCctacagatcgcggcggtaggctggataaggcgtttacgccacatccggcaatacaactgccgcaat                                  <  2:1703608‑M2/100‑67 (MQ=255)
                                                                  ggCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATGATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTCGTAATCg                                  >  2:2595177/1‑100 (MQ=255)
                                                                  ggCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTCgagatcg                                  >  2:3019433/1‑94 (MQ=255)
                                                                  ggCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTCGTAATCg                                  <  2:2983281/100‑1 (MQ=255)
                                                                   gCCGGATAAGACGCGTCAAGCGTCGCATCCGGCctacagatcgcggcggtaggctggataaggcgtttacgccacatccggcaatacaactgccgcaatg                                 <  2:143333‑M2/100‑68 (MQ=255)
                                                                    ccGGATAAGACGCGTCAAGCGTCGCATCCGGCctacagatcgcggcggtaggctggataaggcgtttacgccacatccggcaatacaactgccgcaatgt                                <  2:602447‑M2/100‑69 (MQ=255)
                                                                    ccGGATAAGACGCGTCAAGCGTCGCATCCGGCctacagatcgcggcggtaggctggataaggcgtttacgccacatccggcaatacaactgccgcaatgt                                <  1:1779823‑M2/100‑69 (MQ=255)
                                                                     cGGATAAGACGCGTCAAGCGTCGCATCCGGCctacagatcgcggcggtaggctggataaggcgtttacgccacatccggcaatacaactgccgcaatgtt                               <  1:1912622‑M2/100‑70 (MQ=255)
                                                                     cGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTCGTAATCGATc                               <  2:916467/100‑1 (MQ=255)
                                                                      ggATAAGACGCGTCAAGCGTCGCATCCGGCctacagatcgcggcggtaggctggataaggcgtttacgccacatccggcaatacaactgccgcaatgttt                              <  1:717231‑M2/100‑71 (MQ=255)
                                                                       gATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTCGTAATCGATCa                              <  1:2407847/99‑1 (MQ=255)
                                                                         tAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTCGTAATCGATCAGTg                           <  1:1129202/100‑1 (MQ=255)
                                                                         tAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTCGTAATCGATCAGTg                           <  1:550625/100‑1 (MQ=255)
                                                                          aaGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTCGTAATCGATCAGTGc                          <  2:3221583/100‑1 (MQ=255)
                                                                           aGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATAGCAATAGGGCAGTGTGTCGTAATAGATCAGTGCg                         >  1:3274863/1‑100 (MQ=255)
                                                                           aGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCAAATCGCCAAAAAAAAATGTGTCGTAATCGATCAGTGCg                         >  1:787227/1‑100 (MQ=255)
                                                                              cgcgTCACGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTCCTGATTACCCACCCGAACGCCATAGGGCAGTGTGTCGTAATCGACCAGt                            >  2:67388/1‑94 (MQ=255)
                                                                              cgcgTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTCGTAATCGATCAGTGCGttt                      >  2:1132096/1‑100 (MQ=255)
                                                                               gcgTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTCGTAATCGATCAGTGCGtttt                     >  1:1078345/1‑100 (MQ=255)
                                                                               gcgTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTCGTAATCGATCAGTGCGtttt                     <  1:3361912/100‑1 (MQ=255)
                                                                                cgTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTCGTAATCGATCAGTGCGttttt                    >  2:775689/1‑100 (MQ=255)
                                                                                 gTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTCGTAATCGATCAGTGCGTTTTTc                   >  1:3820122/1‑100 (MQ=255)
                                                                                 gTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGAAGTGTGTCGTAATCGATCAGTGCGTTTTTc                   >  2:3101081/1‑100 (MQ=255)
                                                                                   cAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTCGTAATCGATCAGTGCGTTTTTCtt                 <  2:1121833/100‑1 (MQ=255)
                                                                                   cAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTCGTAATCGATCAGTGCGTTTTTCtt                 <  1:2477998/100‑1 (MQ=255)
                                                                                   cAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTCGTAATCGATCAGTGCGTTTTTCtt                 <  2:2448710/100‑1 (MQ=255)
                                                                                     aGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTCGTAATCGATCAGTGCGTTTTTCTtat               <  1:3257542/100‑1 (MQ=255)
                                                                                        gTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTCGTAATCGATCAGTGCGTTTTTCTTATACg            <  1:3740351/100‑1 (MQ=255)
                                                                                        gTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTCGTAATCGATCAGTGCGTTTTTCTTATACg            <  1:134157/100‑1 (MQ=255)
                                                                                        gTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTCGTAATCGATCAGTGCGTTTTTCTTATACg            >  2:1004666/1‑100 (MQ=255)
                                                                                           gCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGt         >  2:2490047/1‑100 (MQ=255)
                                                                                           gCATCCGGCAAATAGAGCCTGGCTGATAATTACTGATTACTCACCTGATCGCCATAGGGAAGTGTGTCGTAATCGATACGTGCGTTTTTCTTATACGGGt         >  2:447331/1‑100 (MQ=255)
                                                                                            cATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGtt        >  1:2191313/1‑100 (MQ=255)
                                                                                              tCCGGCctacagatcgcggcggtaggctggataaggcgtttacgccacatccggcaatacaactgccgcaatgtttacatcgaactcccctcaggccaca      <  2:1949277‑M2/100‑95 (MQ=255)
                                                                                               ccGGCctacagatcgcggcggtaggctggataaggcgtttacgccacatccggcaatacaactgccgcaatgtttacatcgaactcccctcaggccacac     >  1:1646964‑M2/1‑5 (MQ=255)
                                                                                               ccGGCctacagatcgcggcggtaggctggataaggcgtttacgccacatccggcaatacaactgccgcaatgtttacatcgaactcccctcaggccacac     <  1:2957407‑M2/100‑96 (MQ=255)
                                                                                               ccGGCctacagatcgcggcggtaggctggataaggcgtttacgccacatccggcaatacaactgccgcaatgtttacatcgaactcccctcaggccacac     <  2:1071507‑M2/100‑96 (MQ=255)
                                                                                               ccGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTAcc     >  2:1734622/1‑100 (MQ=255)
                                                                                               ccGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTAcc     <  2:3402389/100‑1 (MQ=255)
                                                                                               ccGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTAcc     <  2:2966411/100‑1 (MQ=255)
                                                                                                cGGCctacagatcgcggcggtaggctggataaggcgtttacgccacatccggcaatacaactgccgcaatgtttacatcgaactcccctcaggccacact    <  1:2204881‑M2/100‑97 (MQ=255)
                                                                                                cGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTACCa    >  1:2257746/1‑100 (MQ=255)
                                                                                                cGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTACCa    >  2:2137023/1‑100 (MQ=255)
                                                                                                  gCctacagatcgcggcggtaggctggataaggcgtttacgccacatccggcaatacaactgccgcaatgtttacatcgaactcccctcaggccacacttt  >  1:3313438‑M2/1‑2 (MQ=255)
                                                                                                  gCctacagatcgcggcggtaggctggataaggcgtttacgccacatccggcaatacaactgccgcaatgtttacatcgaactcccctcaggccacacttt  >  1:64658‑M2/1‑2 (MQ=255)
                                                                                                  gCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTACCAAt  <  2:901132/100‑1 (MQ=255)
                                                                                                   |                                                                                                  
CATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTACCAAT  >  NC_000913/4148412‑4148609

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.