New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 4606703166 (1.190)13 (0.100) 7/168 NT 7.6% coding (998/1032 nt) rsmC 16S rRNA m(2)G1207 methyltransferase, SAM‑dependent
?NC_000913 = 4606716 161 (1.220)coding (985/1032 nt) rsmC 16S rRNA m(2)G1207 methyltransferase, SAM‑dependent
Rejected: Frequency below cutoff threshold.

Only 100 of 202 total aligned reads displayed.

TAGGTCGGATAAGGCGTTCACGCCGCATCCGACACGGTATTCGGCGAGATAATTAACCTTTCTTCGCCTGGCGGGTCATAATGGCGCGATACACCTTGAAGCGCCCTGTTTGCGCGATCACTTCGTGGAAGCCAAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTTCGCTACAATTCGCAGCTCGCCGCC  >  NC_000913/4606617‑4606815
                                                                                                   |                                                                                                   
tAGGTCGGATAAGGCGTTCACGCCGCATCCGACACGGTATTCGGCGAGATAATTAACCTTTCTTCGCCTGGCGGGTCATAATGGCGCGATACACCTTGaa                                                                                                     <  2:1106316/100‑1 (MQ=255)
 aGGTCGGATAAGGCGTTCACGCCGCATCCGACATGGTATTCGGCGAGATAATTAACCTTTCTTCGCCTGGCGGGTCATAATGGCGCGATACACCTTGAAg                                                                                                    >  1:594801‑M2/1‑99 (MQ=255)
  ttccGGATAAGGCGTTCACGACGCATTCGCCACAGTATTCGGCGAGTTAATTAACCTTTCTTCGCCTTGCGGGTCATAATGGCGCGCTTTACCTTGAAgc                                                                                                   >  2:3500855/4‑100 (MQ=255)
   gTCGGATAAGGCGTTCACGCCGCATCCGACACGGTATTCGGCGAGATAATTAACCTTTCTTCGCCTGGCGGGTCATAATGGCGCGATACACCTTGAAgc                                                                                                   <  1:1609477‑M2/99‑3 (MQ=255)
      ggATAAGGCGTTCACGCCGCATCCGACACGGTATTCGGCGAGATAATTAACCTTTCTTCGCCTGGCGGGTCATAATGGCGCGATACACCTTGAAGCGccc                                                                                               <  2:1468535/100‑1 (MQ=255)
      ggATAAGGCGTTCACGCCGCATCCGACACGGTATTCGGCGAGATAATTAACCTTTCTTCGCCTGGCGGGTCATAATGGCGCGATACACCTTGAAGCGccc                                                                                               <  2:1813595/100‑1 (MQ=255)
      ggATAAGGCGTTCACGCCGCATCCGACACGGTATTCGGCGAGATAATTAACCTTTCTTCGCCTGGCGGGTCATAATGGCGCGATACACCTTGAAGCGccc                                                                                               <  1:774854/100‑1 (MQ=255)
      ggATAAGGCGTTCACGCCGCATCCGACACGGTATTCGGCGAGATAATTAACCTTTCTTCGCCTGGCGGGTCATAATGGCGCGATACACCTTGAAGCGccc                                                                                               <  2:1844913/100‑1 (MQ=255)
      ggATAAGGCGTTCACGCCGCATCCGACACGGTATTCGGCGAGATAATTAACCTTTCTTCGCCTGGCGGGTCATAATGGCGCGATACACCTTGAAGCGccc                                                                                               <  1:2817095/100‑1 (MQ=255)
       gATAAGGCGTTCACGCCGCATCCGACACGGTATTCGGCGAGATAATTAACCTTTCTTCGCCTGGCGGGTCATAATGGCGCGATACACCTTGAAGCGCCCt                                                                                              >  1:3285391/1‑100 (MQ=255)
        aTAAGTCGTTCACTCCGTATCCCACACGGTATACGTCGAGATAATTAACCTTTCTCCGCCTGGCGGGTCATAATGGCGCGATACACCTTGAAGCGccc                                                                                               <  1:3501132/98‑1 (MQ=255)
           aGGCGTTCACGCCGCATCCGACACGGTATTCGGCGAGATAATTAACCTTTCTTCGCCTGGCGGGTCATAATGGCGCGATACACCTTGAAGCGCCCTGttt                                                                                          >  1:3635000/1‑100 (MQ=255)
           aGGCGTTCACGCCGCATCCGACACGGTATTCGGCGAGATAATTAACCTTTCTTCGCCTGGCGGGTCATAATGGCGCGATACACCTTGAAGCGCCCTGttt                                                                                          >  1:1387470/1‑100 (MQ=255)
            ggCGTTCACGCCGCATCCGACACGGTATTCGGCGAGATAATTAACCTTTCTTCGCCTGGCGGGTCATAATGGCGCGATACACCTTGAAGCGCCCTGTTTg                                                                                         >  1:2380223/1‑100 (MQ=255)
              cGTTCACGCCGCATCCGACACGGTATTCGGCGAGATAATTAACCTTTCTTCGCCTGGCGGGTCATAATGGCGCGATACACCTTGAAGCGCCCTGTTTgcg                                                                                       <  2:472029/100‑1 (MQ=255)
               gTTCACGCCGCATCCGACACGGTATTCGGCGAGATAATTAACCTTTCTTCGCCTGGCGGGTCATAATGGCGCGATACACCTTGAAGCGCCCTGTTTgcgc                                                                                      <  1:2416272/100‑1 (MQ=255)
               gTTCACGCCGCATCCGACACGGTATTCGGCGAGATAATTAACCTTTCTTCGCCTGGCGGGTCATAATGGCGCGATACACCTTGAAGCGCCCTGTTTgcgc                                                                                      >  1:1979036/1‑100 (MQ=255)
                ttCACGCCGCATCCGACACGGTATTCGGCGAGATAATTAACCTTTCTTCGCCTGGCGGGTCATAATGGCGCGATACACCTTGAAGCGCCCTGTTTGcgcg                                                                                     >  2:1300276/1‑100 (MQ=255)
                 tCACGCCGCATCCGACACGGTATTCGGCGAGATAATTAACCTTTCTTCGCCTGGCGGGTCATAATGGCGCGATACACCTTGTAGCGCCCTGTTTGCGCGa                                                                                    <  2:1857610/100‑1 (MQ=255)
                  cACGCCGCATCCGACACGGTATTCGGCGAGATAATTAACCTTTCTTCGCCTGGCGGGTCATAATAGCGCGATACACCTTGAAGCGCCCTGTTTGCGCGAt                                                                                   >  1:3038863/1‑100 (MQ=255)
                   atgccgcATCCGACACGGTATTCGGCGAGATAATTAACCTTTCTTCGCCTGGCGGGTCATAATGGCGCGATACACCTTGAAGCGCCCTGTTTGCGCGATc                                                                                  <  2:2919639/98‑1 (MQ=255)
                   aCGCCGCATCCGACACGGTATTCGGCGAGATAATTAACCTTTCTTCGCCTGGCGGGTCATAATGGCGCGATACACCTTGAAGCGCACTGTTTGCGCGATc                                                                                  >  1:3859724/1‑100 (MQ=255)
                    cgccgcATCCGACACGGTATTCGGCGAGATAATTAACCTTTCTTCGCCTGGCGGGTCATAATGGCGCGATACACCTTGAAGCGCCCTGTTTGCGCGATc                                                                                  <  2:2356748/99‑1 (MQ=255)
                    cgccgcATCCGACACGGTATTCGGCGAGATAATTAACCTTTCTTCGCCTGGCGGGTCATAATGGCGCGATACACCTTGAAGCGCCCTGTTTGCGCGATCa                                                                                 >  1:2633176/1‑100 (MQ=255)
                        gcATCCGACACGGTATTCGGCGAGATAATTAACCTTTCTTCGCCTGGCGGGTCATAATGGCGCGATACACCTTGAAGCGCCCTGTTTGCGCGATCACTTc                                                                             >  1:2708110/1‑100 (MQ=255)
                        gcATCCGACACGGTATTCGGCGAGATAATTAACCTTTCTTCGCCTGGCGGGTCATAATGGCGCGATACACCTTGAAGCGCCCTGTTTGCGCGATCACTTc                                                                             >  2:1700347/1‑100 (MQ=255)
                           tCCGACACGGTATTCTTTGAGTTAATTAACTTTTCTTTTCTTGGCGGTTCATTTTGTTTCGATACACCTTGAAGCGCCCTGTTTGCGCGATCACTTCGt                                                                           <  1:3181777/99‑1 (MQ=255)
                           tCCGACACGGTATTCGGCGAGATAATTAACCTTTCTTCTCCTGGCGGGTCATAATGGCGCGATACACCTTGAAGCGCCCTGTTTGCGCGATCACTGCGTg                                                                          >  1:2347101/1‑100 (MQ=255)
                           tCCGACACGGTATTCGGCGAGATAATTAACCTTTCTTCGCCTGGCGGGTCATAATGGCGCGATACACCTTGAAGCGCCCTGTTTGCGCGATCACTTCGTg                                                                          <  2:3100195/100‑1 (MQ=255)
                            ccGACACGGTATTCGGCGAGATAATTAACCTTTCTTCGCCTGGCGGGTCATAATGGCGCGATACACCTTGAAGCGCCCTGTTTGCGCGATCACTTCGTgg                                                                         >  1:3684717/1‑100 (MQ=255)
                            ccGACACGGTATTCGGCGAGATAATTAACCTTTCTTCGCCTGGCGGGTCATAATGGCGCGATACACCTTGAAGCGCCCTGTTTGCGCGATCACTTCGTgg                                                                         <  2:968466/100‑1 (MQ=255)
                             cGACACGGTATTCGGCGAGATAATTAACCTTTCTTCGCCTGGCGGGTCATAATGGCGCGATACACCTTGAAGCGCCCTGTTTGCGCGATCACTTCGTGGa                                                                        >  1:3819733/1‑100 (MQ=255)
                             cGACACGGTATTCGGCGAGATAATTAACCTTTCTTCGCCTGGCGGGTCATAATGGCGCGATACACCTTGAAGCGCCCTGTTTGCGCGATCACTTCGTGGa                                                                        >  1:518532/1‑100 (MQ=255)
                               acacGGTATTCGGCGAGATAATTAACCTTTCTTCGCCTGGCGGGTCATAATGGCGCGATACACCTTGAAGCGCCCTGTTTGCGCGATCACTTCGTGGAAg                                                                      >  1:2406374/1‑100 (MQ=255)
                               acacGGTATTCGGCGAGATAATTAACCTTTCTTCGCCTGGCGGGTCATAATGGCGCGATACACCTTGAAGCGCCCTGTTTGCGCGATCACTTCGTGGAAg                                                                      <  2:3813478/100‑1 (MQ=255)
                               acacGGTATTCGGCGAGATAATTAACCTTTCTTCGCCTGGCGGGTCATAATGGCGCGATACACCTTGAAGCGCCCTGTTTGCGCGATCACTTCGTGGAAg                                                                      <  1:1050151/100‑1 (MQ=255)
                               acacGGTATTCGGCGAGATAATGAACCTTTCTTCGCCTGGCGGGTCATAATGGCGCGATACACCTTCAAGCGCCCTGTTTGCGCGATCACTTCGTGGAAg                                                                      <  2:1153230/100‑1 (MQ=255)
                                   ggTATTCGGCGAGATAATTAACCTTTCTTCGCCTGGCGGGTCATAATGGCGCGATACACCTTGAAGCGCCCTGTTTGCGCGATCACTTCGTgagatcgga                                                                  >  1:1472869/1‑92 (MQ=255)
                                     tATTCGGCGAGATAATTAACCTTTCTTCGCCTGGCGGGTCATAATGGCGCGATACACCTTGAAGCGCCCTGTTTGCGCGATCACTTCGTGGAAGCCAAAt                                                                >  1:1557401/1‑100 (MQ=255)
                                      aTTCGGCGAGATAATTAACCTTTCTTCGCCTGGCGTGTCATAATGGCGCGATACACCTTGAAGCGCCCTGTTTGCGCGATCACTTCGTGGAAGCCAAATg                                                               <  2:2436166/100‑1 (MQ=255)
                                      aTTCCGCGAGATAATTAACCTTTCTTCGCCTGGCGGGTCATAATGGCGCGATACACCTTGAAGCGCCCTGTTTGCGCGATCACTTCGTGGAAGCCAAAt                                                                >  2:1914018/1‑99 (MQ=255)
                                        tCGGCGAGATAATTAACCTTTCTTCGCCTGGCGGGTCATAATGGCGCGATACACCTTGAAGCGCCCTGTTTGCGCGATCACTTCGTGGAAGCCAAATGtc                                                             <  2:1350519/100‑1 (MQ=255)
                                         cGGCGAGATAATTATTCTTTCTTCTCCTGGCGGGTCATAATGGCGCGATACACCTTGAAGCGCCCTGTTTGCGCGATCACTTCGTGGAAGCCAAATGtct                                                            <  1:1772864/100‑1 (MQ=255)
                                         cGGCGAGATAATTAACCTTTCTTCGCCTGGCGGGTCATAATGGCGCGATACACCTTGAAGCGCCCTGTTTGCGCGATCACTTCGTGGAAGCCAAATGtct                                                            >  1:3349490/1‑100 (MQ=255)
                                           gCGAGATAATTAACCTTTCTTCGCCTGGCGGGTCATAATGGCGCGATACACCTTGAAGCGCCCTGTTTGCGCGATCACTTCGTGGAAGCCAAATGTCTCa                                                          <  2:2708086/100‑1 (MQ=255)
                                             gagaTAATTAACCTTTCTTCGCCTGGCGGGTCATAATGGCGCGATACACCTTGAAGCGCCCTGTTTGCGAGATCACTTCTTAGAAGCCAAATGTCTCATc                                                        >  1:973221/1‑100 (MQ=255)
                                              agaTAATTAACCTTTCTTCGCCTGGCGGGTCATAATGGCGCGATACACCTTGAAGCGCCCTGTTTGCGCGATCACTTCGTGGAAGCCAAATGTCTCATcc                                                       <  2:1657295/100‑1 (MQ=255)
                                              agaTAATTAACCTTTCTTCGCCTGGCGGGTCATAATGGCGCGATACACCTTGAAGCGCCCTGTTTGCGCGATCACTTCGTGGAAGCCAAATGTCTCATcc                                                       >  2:1498381/1‑100 (MQ=255)
                                              agaTAATTAACCTTTCTTCGCCTGGCGGGTCATAATGGCGCGATACACCTTGAAGCGCCCTGTTTGCGCGATCACTTCGTGGAAGCCAAATGTCTCATcc                                                       <  1:3079804/100‑1 (MQ=255)
                                                 tAATTAACCTTTCTTCGCCTGGCGGGTCATAATGGCGCGATACACCTTGAAGCGCCCTGTTTGCGCGATCACTTCGTGGAAGCCAAATGTCTCATCCAGc                                                    <  2:3176784/100‑1 (MQ=255)
                                                 tAATTAACCTTTCTTCGCCTGGCGGGTCATAATGGCGCGATACACCTTGAAGCGCCCTGTTTGCGCGATCACTTCGTGGAAGCCAAATGTCTCATCCAGc                                                    >  2:3901883/1‑100 (MQ=255)
                                                 tAATTAACCTTTCTTCGCCTGGCAGGACATAATGGCGCGATACACCTTGAAGCGCCCTGTTTGCGCGATCACTTCGTGGAAGCCAAATGTCTCATCCAGc                                                    >  2:2288815/1‑100 (MQ=255)
                                                   aTTAACCTTTCTTCGCCTGGCGGGTCATAATGGCGCGATACACCTTGAAgcgccattatgacccgccaggcgaagaaaggttaattatctcgccgaata                                                   <  1:3905298‑M2/99‑51 (MQ=255)
                                                   aTTAACCTTTCTTCGCCTGGCGGGTCATAATGGCGCGATACACCTTGAAGCGCCCTGTTTGCGCGATCACTTCGTGGAAGCCAAATGTCTCATCCAGCAc                                                  >  1:1958723/1‑100 (MQ=255)
                                                   aTTAACCTTTCTTCGCCTGGCGGGTCATAATGGCGCGATACACCTTGAAGCGCCCTGTTTGCGCGATCACTTCGTGGAAGCCAAATGTCTCATCCAGCAc                                                  <  1:2360649/100‑1 (MQ=255)
                                                    ttAACCTTTCTTCGCCTGGCGGGTCATAATGGCGCGATACACCTTGAAGCGCCCTGTTTGAGCGATCACTTCGTGGAAGCCAAATGTCTCATCCAGCACg                                                 >  2:3415953/1‑100 (MQ=255)
                                                       aCCTTTCTTCGCCTGGCGGGTCATAATGGCGCGATACACCTTGAAGCGCCCTGTTTGCGCGATCACTTCGTGGAAGCCAAATGTCTCATCCAGCACGTcc                                              >  1:1040330/1‑100 (MQ=255)
                                                       aCCTTTCTTCGCCTGGCGGGTCATAATGGCGCGATACACCTTGAAGCGCCCTGTTTGCGCGATCACTTCGTGGAAGCCAAATGTCTCATCCAGCACGTcc                                              >  1:127615/1‑100 (MQ=255)
                                                        ccTTTCTTCGCCTGGCGGGTCATAATGGCGCGATACACCTTGAAGCGCCCTGTTTGCGCGATCACTTCGTGGAAGCCAAATGTCTCATCCAGCACGTCCg                                             <  1:1167520/100‑1 (MQ=255)
                                                           ttcttcGCCTGGCGGGTCATAATGTCGCGATACACCTTGAAGCGCCCTGTTTGCGCGATCACTTCGTGGAAGCCAAATGTCTCATCCAGCACGTCCGGan                                          <  2:462368/100‑2 (MQ=255)
                                                                cGCCTGGCGGGTCATAATGGCGCGATACACCTTGAAGCGCCCTGTTTGCGCGATCACTTCGTGGAAGCCAAATGTCTCATCCAGCACGTCCGGATAAGGc                                     <  2:518525/100‑1 (MQ=255)
                                                                cGCCTGGCGGGTCATAATGGCGCGATACACCTTGAAGCGCCCTGTTTGCGCGATCACTTCGTGGAAGCCAAATGTCTCATCCAGCACGTCCGGATAAGGc                                     <  2:2234016/100‑1 (MQ=255)
                                                                  ccTGGCGGGTCATAATGGCGCGATACACCTTGAAGCGCCCTGTTTGCGCGATCACTTCGTGGAAGCCAAATGTCTCATCCAGCACGTCCGGATAAGGCAg                                   >  1:3564373/1‑100 (MQ=255)
                                                                  ccTGGCGGGCGATGATGGCGCGATACACCTTGAATCGCCTTGTTTGCGCGATGACTTCGTGGAAGCCAAATGTCTCATCCAGCACGTCCGGATAAGGc                                     <  2:1587164/98‑1 (MQ=255)
                                                                   cTGGCGGGTCATAATGGCGTGATACACTTTGAAGCGCCTTGTTTGCGCGATCACTTCGTGGAAGCCAAATGTCTCATCCAGCACGTCCGGATAAggt                                     <  2:827821/97‑2 (MQ=255)
                                                                      gCGGGTCATAATGGCGCGATACACCTTGAAGCGCCCTGTTTGCTCGATCACTTCGTGGAAGCCAAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAg                               <  2:2505911/100‑1 (MQ=255)
                                                                      gCGGGTCATAATGGCGCGATACACCTTGAAGCGCCCTGTTTGCGCGATCACTTCGTGGAAGCCAAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAg                               >  2:1140462/1‑100 (MQ=255)
                                                                      gCGGGTCATAATGGCGCGATACACCTTGAAGCGCCCTGTTTGCGCGATCACTTCGTGGAAGCCAAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAg                               <  2:1022568/100‑1 (MQ=255)
                                                                       cGGGTCATAATGGCGCGATACACCTTGAAGCTCCCTGTTTGCGCGATCACTTCGTGGAAGCCAAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAgg                              <  1:2037171/100‑1 (MQ=255)
                                                                       cGGGTCATAATGGCGCGATACACCTTGAAGCGCCCTGTTTGCGCGATCACTTCGTGGAAGCCAAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAgg                              >  1:129636/1‑100 (MQ=255)
                                                                       cGGGTCATAATGGCGCGATACACCGTGAAGCGCCCTGTTTGCGCGATCACTTCGTGGAAGCCAAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAgg                              <  2:639099/100‑1 (MQ=255)
                                                                        gggTCATAATGGCGCGATACACCTTGAAGCTCCCGGTTTGCGCGATCACTTCGTGGAAGCCAAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGc                             >  2:2277530/1‑100 (MQ=255)
                                                                        atctcatAATGGCGCGATACACCTTGAAgcgccattatgacccgccaggcgaagaaaggttaattatctcgccgaataccgtgtcggatgcggcgtgaac                             >  1:443434‑M2/4‑28 (MQ=255)
                                                                         ggTCATAATGGCGCGATACACCTTGAAgcgccattattacccgccaggcgaagaaaggttaattatatagccgaataccgtgtcggatgcggcgtgaacg                            <  1:1573728‑M2/100‑74 (MQ=255)
                                                                         ggTCATAATGGCGCGATACACCTTGAAgcgccattatgacccgccaggcgaagaaaggttaattatctcgccgaataccgtgtcggatgcggcgtgaac                             <  1:1541805‑M2/99‑73 (MQ=255)
                                                                         ggTCATAATGGCGCGATACACCTTGAAGCGCCCTGTTTGCGCGATCACTTCGTGGAAGCCAAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCg                            <  2:1945129/100‑1 (MQ=255)
                                                                           tCATAATGGCGCGATACACCTTGAAGCGCCCTGTTTGCGCGATCACTTCGTGGAAGCCAAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGtt                          <  2:743148/100‑1 (MQ=255)
                                                                           tCATAATGGCGCGATACACCTTGAAGCGCCCTGTTTGCGCGATCACTTCGTGGAAGCCAAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGtt                          >  2:358387/1‑100 (MQ=255)
                                                                            cATAATGGCGCGATACACCTTGAAgcgccattatgacccgccaggcgaagaaaggttaattatctcgccgaataccgtgtcggatgcggcgtgaacgcct                         <  2:3802649‑M2/100‑77 (MQ=255)
                                                                            cATAATGGCGCGATACACCTTGAAgcgccattatgacccgccaggcgaagaaaggttaattatctcgccgaataccgtgtcggatgcggcgtgaacgcc                          <  2:956565‑M2/99‑76 (MQ=255)
                                                                             aTAATGGCGCGATACACTTTGAAGCGCCCTGTTTGCGCGATCACTTCGTGGAAGCCAAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTTCg                        <  1:1980925/100‑1 (MQ=255)
                                                                              tAATGGCGCGATACACCTTGAAGCGCCCTGTTTGCGCGATCACTTCGTGGAAGCCAAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTTCGc                       <  1:87052/100‑1 (MQ=255)
                                                                              tAATGGCGCGATACACCTTGAAGCGCCCTGTTTGCGCGATCACTTCGTGGAAGCCAAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTTCGc                       <  2:3285358/100‑1 (MQ=255)
                                                                               aaTGGCGCGATACACCTTGAAGCGCCCTGTTTGCGCGATCACTTCGTGGAAGCCAAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTTCGCt                      >  2:2657730/1‑100 (MQ=255)
                                                                                 tGGCGCGATACACCTTGAAGCGCTCTGTTTGTGCGATCACTTCGTGGAAGCCAAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTTCGCTAc                    <  1:10149/100‑1 (MQ=255)
                                                                                  tgcgcGATACACCTTGAAGCGCGCTGTTTGAGCGATCACTTCGTGGAAGCCAAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTTCGCTACa                   >  2:3488253/2‑100 (MQ=255)
                                                                                  ggCGCGATACACCTTGAAGCGCCCTGTTTGCGCGATCACTTCGTGGAAGCCAAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTTCGCTACa                   >  1:3725952/1‑100 (MQ=255)
                                                                                    cgcgATACACCTTGAAGCGCCCTGTTTGCGTGTTCTCTTCGTGGAAGCCAAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTTCGCTACaan                 <  1:249193/100‑2 (MQ=255)
                                                                                    cgcgATACACCTTGAAGCGCCCTGTTTGCGCGATCACTTCGTGGAAGCCAAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTTCGCTACAAt                 >  2:656104/1‑100 (MQ=255)
                                                                                       gATACACCTTGAAGCGCCCTGTTTGCGCGATCACTTCGTGGAAGCCAAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTTCGCTACAATTCg              >  2:1417268/1‑100 (MQ=255)
                                                                                        aTACACCTTTAAGCGCCCTGTTTGCGCGATCACTTCGTGGAAGCCAAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTTCGCTACAATTCGc             <  1:2285793/100‑1 (MQ=255)
                                                                                        aTACACCTTGAAGCGCCCTGTTTGCGCGATCACTTCGTGGAAGCCAAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTTCGCTACAATTCGc             <  1:2543030/100‑1 (MQ=255)
                                                                                        aTACACCTTGAAGCGCCCTGTTTGCGCGATCACTTCGTGGAAGCCAAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTTCGCTACAATTCGc             >  2:482974/1‑100 (MQ=255)
                                                                                        aTACACCTTGAAGCGCCCTGTTTGCGCGATCACTTCGTGGAAGCCAAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTTCGCTACAATTCGc             <  2:4413/100‑1 (MQ=255)
                                                                                        aTACACCTTGAAGCGCCCTGTTTGCGCGATCACTTCGTGGAAGCCAAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTTCGCTACAATTCGc             <  1:2159340/100‑1 (MQ=255)
                                                                                         tACACCTTGAAGCGCCCTGTTTGCGCGATCACTTCGTGGAAGCCAAATTTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTTCGCTACAATTCGCa            >  1:2196458/1‑100 (MQ=255)
                                                                                         tACACCTTGAAGCGCCCTGTTTGCGCGATCACTTCGTGGAAGCCAAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTTCGCTACAATTCGCa            >  1:3432728/1‑100 (MQ=255)
                                                                                           cacCTTGAAGCGCCCTGTTTGCGCGATCACTTCGTGGATGCCAAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTTCGCTACAATTCGCAGc          <  1:474247/100‑1 (MQ=255)
                                                                                                 gAAGCGCCCTGTTTGCGCGATCACTTCGTGGAAGCCAAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTTCGCTACAATTCGCAGCTcgccg    >  2:1230089/1‑100 (MQ=255)
                                                                                                  aaGCGCCCTGTTTGCGCGATCACTTCGTGGAAGCCAAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTTCGCTACAATTCGCAGCTcgccgc   >  2:913580/1‑100 (MQ=255)
                                                                                                   |                                                                                                   
TAGGTCGGATAAGGCGTTCACGCCGCATCCGACACGGTATTCGGCGAGATAATTAACCTTTCTTCGCCTGGCGGGTCATAATGGCGCGATACACCTTGAAGCGCCCTGTTTGCGCGATCACTTCGTGGAAGCCAAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTTCGCTACAATTCGCAGCTCGCCGCC  >  NC_000913/4606617‑4606815

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.