New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 4636885133 (0.950)14 (0.110) 7/168 NT 9.5% coding (190/1425 nt) creC sensory histidine kinase in two‑component regulatory system with CreB or PhoB
?NC_000913 = 4636902 140 (1.060)coding (207/1425 nt) creC sensory histidine kinase in two‑component regulatory system with CreB or PhoB
Rejected: Frequency below cutoff threshold.

Only 100 of 179 total aligned reads displayed.

GCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCAATGAATATCATGTCTATATGACCGATGCGCAGGGC  >  NC_000913/4636804‑4637001
                                                                                                  |                                                                                                   
gatctggaggggACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGg                                                                                                    >  1:492521‑M2/6‑99 (MQ=255)
gCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGg                                                                                                    <  2:652374‑M2/100‑2 (MQ=255)
gCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGg                                                                                                    <  2:754781‑M2/100‑2 (MQ=255)
gCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGg                                                                                                    >  1:2429636‑M2/1‑99 (MQ=255)
  aaCGGAGTGGACGTTGATCGACACCGCAACGTTGCTGTCGGAGCTGGCGGGTTTCGATTTGCTCTCTTGGTACCCAACGCATGGGCAACTGGCGCAg                                                                                                     <  2:1697301/97‑1 (MQ=255)
  aaCGGAGGGGACGTTTATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCATCGCATGGGCAACTGGCGCAGgcg                                                                                                  >  2:2300821‑M2/1‑97 (MQ=255)
     ggAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGgagatc                                                                                               <  2:492514‑M2/100‑7 (MQ=255)
     ggAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTACTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGttt                                                                                               <  1:2647261/100‑1 (MQ=255)
      gAGGGGACGTTGATCGACACCGGAACGTTGCTGGGGGAGCTGGCGCGTCCCGATTTGCTCTGTGGGGACCGAACGCATGGGCAACTGGCGCAGGCGTTTa                                                                                              <  2:2705762/100‑1 (MQ=255)
      gAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTa                                                                                              >  1:1391469/1‑100 (MQ=255)
      gAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTa                                                                                              >  2:3442919/1‑100 (MQ=255)
          ggACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCa                                                                                          >  1:2372037/1‑100 (MQ=255)
          ggACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCAGATTTGCTCTCTGGCGGCCCAACGCATGAGCAACTGGCGCAGGCGTTTAAt                                                                                            >  2:2019888/1‑98 (MQ=255)
             cGTTGATCGACACCGCAACGTTGCTGTCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCt                                                                                       <  2:3370665/100‑1 (MQ=255)
             cGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCt                                                                                       >  2:1317771/1‑100 (MQ=255)
             cGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCt                                                                                       <  2:17438/100‑1 (MQ=255)
              gTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTa                                                                                      <  1:1620298/100‑1 (MQ=255)
               ttGATCGACACCGCAACGTTGCTGGCTGAGCTGGCGCGTCCCTATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTac                                                                                     <  1:3582355/100‑1 (MQ=255)
               ttGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTac                                                                                     <  1:3272768/100‑1 (MQ=255)
                 gATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTacaa                                                                                   >  1:3000536/1‑100 (MQ=255)
                 gATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTacaa                                                                                   >  1:781644/1‑100 (MQ=255)
                 gATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGAGCAACTGGCGCAGGCGTTTAATCAGCTacaa                                                                                   >  1:1734299/1‑100 (MQ=255)
                    cGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGAACCCAACGCATGGACAACTGGCGCAGGCGTTTAATCAGCTACAACAt                                                                                >  1:2148597/1‑100 (MQ=255)
                     gACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCCGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATc                                                                               >  2:2020609/1‑100 (MQ=255)
                       cacCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGc                                                                             <  2:734317/100‑1 (MQ=255)
                         ccGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGccc                                                                           <  2:1114848/100‑1 (MQ=255)
                         ccGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCAAGGGCAACTGGCGAAGGCGTTTAATCAGCTACAACATCGccc                                                                           >  1:776335/1‑100 (MQ=255)
                            cAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGtt                                                                        <  1:2585336/100‑1 (MQ=255)
                              aCGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTc                                                                      <  1:2258852/100‑1 (MQ=255)
                              aCGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTc                                                                      <  1:3904781/100‑1 (MQ=255)
                               cGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTcg                                                                     >  1:1750118/1‑100 (MQ=255)
                                 ttGCTGGCGGTGCTGGCGCGTCCCGATTTTCTCTGTGGGGACGCAGCGCATGTGCATCTGGCGCAGGCGTTTGATCATCTACAATGTGGCCCGTTTc                                                                      <  2:1681294/97‑1 (MQ=255)
                                 ttGCTGGCGGAGCTGGCGCGTTCTGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTcgcg                                                                   <  1:630484/100‑1 (MQ=255)
                                 ttGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCGACTGGCGCAGGCGTTTAATCAGCTACGACATCGCGCGTTTcgcg                                                                   <  2:2437890/100‑1 (MQ=255)
                                  tGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCgcgc                                                                  <  2:2837848/100‑1 (MQ=255)
                                   gCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCgcgc                                                                  <  2:12804/99‑1 (MQ=255)
                                   gCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGcc                                                                 <  2:2159542/100‑1 (MQ=255)
                                   gCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCCCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGcc                                                                 >  2:79578/1‑100 (MQ=255)
                                     tGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCaa                                                               >  1:2701197/1‑100 (MQ=255)
                                     tGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCaa                                                               <  1:2312327/100‑1 (MQ=255)
                                     tGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCaa                                                               <  1:1301828/100‑1 (MQ=255)
                                      ggCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAat                                                              <  1:3043800/100‑1 (MQ=255)
                                        cGGAGCTCGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCACGTTTCGCGCCAatat                                                            >  2:3839461/1‑100 (MQ=255)
                                            gCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGt                                                        >  2:350579/1‑100 (MQ=255)
                                              tGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCACAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTgg                                                      >  1:740802/1‑100 (MQ=255)
                                               ggCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGc                                                     >  2:1947530/1‑100 (MQ=255)
                                               ggCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGc                                                     >  1:2676778/1‑100 (MQ=255)
                                                gcgcGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCa                                                    <  2:2801715/100‑1 (MQ=255)
                                                gcgcGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCa                                                    >  1:1994571/1‑100 (MQ=255)
                                                gcgcGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCa                                                    <  1:572127/100‑1 (MQ=255)
                                                 cgcgTCCCGCTTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTGATCATCTCCACCATCGCCCAATTCGCTCCAGTATGGGTGGCAt                                                   >  2:1880972/1‑100 (MQ=255)
                                                 cgcgTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCAt                                                   <  1:1250509/100‑1 (MQ=255)
                                                   cgTCCCGATTTGCTCTCTGGGGACCCAACGCATGTGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCACCCGTTTCGCGCCAATATCGGTGGCATTa                                                 >  1:2192535/1‑100 (MQ=255)
                                                    gTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTaa                                                >  1:3072906/1‑100 (MQ=255)
                                                    gTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTaa                                                >  2:1429049/1‑100 (MQ=255)
                                                     tCCCGATTTGCTCTCTGGGGACCCAACGTATGGGCAACTGGCGCAAGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCAtt                                                  <  2:465320/97‑1 (MQ=255)
                                                     tCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAAc                                               >  1:475596/1‑100 (MQ=255)
                                                     tCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTAAAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTaa                                                >  2:2205862/1‑99 (MQ=255)
                                                      cccGATTTGCTCTCTGGGGTCCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAAc                                               <  1:102545/99‑1 (MQ=255)
                                                      cccGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACa                                              >  2:2387652/1‑100 (MQ=255)
                                                       ccGATTTGCTCTCTGGGGACCCAACGAATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACaa                                             >  1:2378754/1‑100 (MQ=255)
                                                         gATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAg                                           <  2:2994269/100‑1 (MQ=255)
                                                          aTTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGt                                          <  1:1421990/100‑1 (MQ=255)
                                                             tGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCATGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTgcg                                       <  1:418551/100‑1 (MQ=255)
                                                               ctctctGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCGTTAACAAAGTGCGCa                                     >  1:3862383/1‑100 (MQ=255)
                                                               ctctctGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCa                                     >  1:2097196/1‑100 (MQ=255)
                                                                tctctGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCaa                                    <  1:3395632/100‑1 (MQ=255)
                                                                 ctctGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCAAt                                   >  2:345383/1‑100 (MQ=255)
                                                                   ctGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCAATGa                                 >  1:1625854/1‑100 (MQ=255)
                                                                    tGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCAATGaa                                >  1:2325586/1‑100 (MQ=255)
                                                                      gggACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCAATGAata                              >  1:1453654/1‑100 (MQ=255)
                                                                      gggACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCAATGAata                              <  2:1644784/100‑1 (MQ=255)
                                                                       ggACCCAACGCATGGGCAACTGGCGCAGgcgttgggtccccagagagcaaatcgggacgcgccagatccgcccgcaacgttgcggtgtcgataaacgtcc                             <  1:1674932‑M2/100‑73 (MQ=255)
                                                                       ggACCCAACGCATGGGCAACTGGCGCAGgcgttgggtccccagagagcaaatcggaacgcgccagctccgccagcaacgttgcggtgtcgatcaacgtcc                             <  1:281148‑M2/100‑73 (MQ=255)
                                                                         aCCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCAATGAAGATCa                           <  2:708102/100‑1 (MQ=255)
                                                                          cccAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCAATGAATATCAt                          >  2:839677/1‑100 (MQ=255)
                                                                            cAACGCATGGGCAACTGGCGCCGgcgttgggtccccagagagcaaatcgggacgcgccagctccgccagcaacgttgcggtgtcgatcaacgtcccctcc                        <  1:1874766‑M2/100‑78 (MQ=255)
                                                                             aaCGCATGGGCAACTGGCGCAGgcgttgggtccccagagagcaaatcgggacgcgccagctccgccagcaacgttgcggtgtcgatcaacgtcccctccg                       <  1:3647635‑M2/100‑79 (MQ=255)
                                                                             aaCGCATGGGCAACTGGCGCAGgcgttgggtccccagagagcaaatcgggacgcgccagcaccgccagcaacgttgcggtgtcgatcaacgtcccctccg                       <  1:1006057‑M2/100‑79 (MQ=255)
                                                                             aaCGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCAATGAATATCATGTc                       >  2:1177201/1‑100 (MQ=255)
                                                                              aCGCATGGGCAACTGGCGCAGgcgttgggtccccagagagcaaatcgggacgcgccagctccgccagcaacgttgcggtgtcgatcaacgtcccctccgt                      <  1:31610‑M2/100‑80 (MQ=255)
                                                                               cGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCAATGAATATCATGTCta                     >  1:1936250/1‑100 (MQ=255)
                                                                                gCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCAATGAATATCATGTCtat                    <  1:202743/100‑1 (MQ=255)
                                                                                 cATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCAATGAATATCATGTCtata                   <  2:1448995/100‑1 (MQ=255)
                                                                                 cATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCAATGAATATCATGTCtat                    <  2:367750/99‑1 (MQ=255)
                                                                                   tGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCAATGAATATCATGTCTATATg                 <  1:2808478/100‑1 (MQ=255)
                                                                                   tGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCAATGAATATCATGTCTATATg                 >  2:582936/1‑100 (MQ=255)
                                                                                   tGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCAATGAATATCATGTCTATATg                 >  2:1560724/1‑100 (MQ=255)
                                                                                       naaCTGGCGCAGACGTTTAATCAGCTACAACATCGCCCGATTCGCGCCAATATCGGCGGTATCAACAAAGTGCGCAGTGAATATCATGTCTATATGACCg             >  2:1578288/2‑100 (MQ=255)
                                                                                         aCTGGGGCATGCGTTTATTCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCAATGAATATCATGTCTATATGACCGAt           <  2:1087208/100‑1 (MQ=255)
                                                                                         aCTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGAGCAATGAATATCATGTCTATATGACCGAt           >  2:1003117/1‑100 (MQ=255)
                                                                                         aCTGGCGCAGGCGTTTAATCAGCTACAACAGCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCAATGAATATCATGTCTATATGACCGAt           <  1:3442958/100‑1 (MQ=255)
                                                                                          cTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCAATGAATATCATGTCTATATGACCGATg          <  1:3832558/100‑1 (MQ=255)
                                                                                           tGGCGCAGGCGTTTAATCAGCTACAACATTGTCCGTTTCGCGTCAATATCGGTGGCATTAACAAAGTGCGCAATGAATATCATGTCTATATGAcc              <  2:2623148/95‑1 (MQ=255)
                                                                                            ggCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCAATGAATATCATGTCTATATGACCGATgcg        >  1:932799/1‑100 (MQ=255)
                                                                                              cgcTGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCAATGAATTTCATGTTTATATGACCGATGCGCa      <  2:937119/100‑1 (MQ=255)
                                                                                              cgcAGGGGTTTAATCAGCTACGACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCAATGAATATCATGTCTATATGACCGATgcg        <  2:3161407/98‑1 (MQ=255)
                                                                                              cgcAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCAATGAATATCATGTCTGTATGACCGATGCGCa      >  1:3874109/1‑100 (MQ=255)
                                                                                              cgcAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCAATGAATATCATGTCTATATGACCGATGCGCa      >  1:2886453/1‑100 (MQ=255)
                                                                                                  ggCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCAATGAATATCATGTCTATATGACCGATGCGCAGGGc  >  1:2270470/1‑100 (MQ=255)
                                                                                                  |                                                                                                   
GCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCAATGAATATCATGTCTATATGACCGATGCGCAGGGC  >  NC_000913/4636804‑4637001

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.