New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 279841	NA (NA)	29 (0.220)	8/168	NT	NA	noncoding (90/768 nt)	IS1	repeat region
	?	NC_000913	= 279852	NA (NA)					noncoding (79/768 nt)	IS1	repeat region

GTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAGAACACAAATGGGCTAAT  >  NC_000913/279835‑279950                  |                                                                                                   gTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCgaga                  <  1:3030965/100‑1 (MQ=31) gTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCgaga                  >  2:2854975/1‑100 (MQ=31) gTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCgaga                  <  2:1757982/100‑1 (MQ=31) gTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCgaga                  >  1:444131/1‑100 (MQ=31) gTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCgaga                  >  1:3719800/1‑100 (MQ=31) gTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCgag                   <  1:3927414/99‑1 (MQ=11)   aGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAGAac                <  2:2553590/100‑1 (MQ=33)    gCTGAACAGGAGGGACAGCTGATAGAAACAGAAGTCACTGTAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAGAaca               <  1:160188/100‑1 (MQ=255)    gCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAGAaca               >  1:208441/1‑100 (MQ=35)    gCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAGAaca               >  2:3082858/1‑100 (MQ=35)     cTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAGAacac              >  2:1077843/1‑100 (MQ=35)      tGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACTTCAAAAACACCATCATACACTAAATCATTAAGTTGGCAGTATCACCGAGAAcaca             <  2:902549/100‑1 (MQ=255)       gAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAGAACACaa            >  2:218898/1‑100 (MQ=38)       gAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAGAACACaa            >  1:3510300/1‑100 (MQ=38)        aaCAGGATTGACAGCTGATATAAACAGAAGCCACTGGAGCACCTCAAAAACACAATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAGAACACaaa           >  2:601757/1‑100 (MQ=14)         aCAGGAGGGACAGCTGATATAAACAGAAGCCATTGGAGCACCTCAAAAACACCATCATACACTATATCAGTAATTTGTCAGCATCACCGAGAACACAAAt          <  2:1255242/100‑1 (MQ=14)         aCAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAGAACACAAAt          <  1:3082886/100‑1 (MQ=40)         aCAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAGAACACAAAt          >  2:3895647/1‑100 (MQ=40)         aCAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGAAAGTTGGCAGCATCACCGAGAACACAAAt          <  2:1091334/100‑1 (MQ=255)          cAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCtagatcggaagag         >  1:3504558/1‑91 (MQ=11)           aggaggGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAGAACACAAAt          <  2:3718961/98‑1 (MQ=40)            ggaggGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAGAACACAAATggg       <  1:82517/100‑1 (MQ=255)            ggaggGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAGAACACAAATggg       >  1:3477644/1‑100 (MQ=255)             gaggGATAGCGGATAGAAACAGAAGCCACTGTAGCACCTCAAAAACACCATCATACACTAAATCAGAAAGTTGACAACATAACCGAGAACACAAATGGGc      >  1:784107/1‑100 (MQ=14)             gaggGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAGAACACAAATGGGc      <  1:73055/100‑1 (MQ=255)             gaggGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAGAACACAAATGGGc      <  2:1587352/100‑1 (MQ=255)               gggACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAGAACACAAATGGGCTa    >  1:3303736/1‑100 (MQ=255)               gggACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAGAACACAAATGGGCTa    >  2:3282241/1‑100 (MQ=255)               gggACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAGAACACAAATGGGCTa    >  1:2835351/1‑100 (MQ=255)                 gACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAGAACACAAATGGGCTAAt  >  2:2987763/1‑100 (MQ=255)                 gACAGCTGATAGAAACAGAAGCCACTGAAGCAACTCAATAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAGAACACAAATGGGCTAAt  >  2:975727/1‑100 (MQ=255)                  |                                                                                                   GTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAGAACACAAATGGGCTAAT  >  NC_000913/279835‑279950

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.