New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	732929 =	89 (0.640)	14 (0.110)	5/168	NT	25.0%	coding (3347/4194 nt)	rhsC	Rhs protein with putative toxin domain; putative neighboring cell growth inhibitor
	?	NC_000913	3765552 =	0 (0.000)					coding (3370/4134 nt)	rhsA	Rhs protein with putative toxin 55 domain; putative polysaccharide synthesis/export protein; putative neighboring cell growth inhibitor

AGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCCC  >  NC_000913/3765516‑3765651                                     |                                                                                                    ccaccgtcaggccgcacgatgccagccagcggcggcCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCAcc                                      >  1:2892803‑M2/37‑100 (MQ=255)   acggtcaggccgcacgatgccagccagcggcggcCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTg                                    >  2:2545936‑M2/35‑100 (MQ=255)    ccacggtcaggccgcacgatgccagccagcggcCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGt                                   >  1:972715‑M2/34‑100 (MQ=255)        cgtcaggccgcacgatgccagccagcggcCTGACGGTGGAGCAGATGCAAAACCAAATAAACCAGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCa                               >  1:1012815‑M2/30‑100 (MQ=255)         gtcaggccgcacgatgccagccagcggcCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCAc                              >  1:2236706‑M2/29‑100 (MQ=255)          ggccgcacgatgccagccagcggcggcCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACt                             >  1:3090764‑M2/28‑100 (MQ=255)          ggccgcacgatgccagccagcggcggcCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACt                             >  1:3038444‑M2/28‑100 (MQ=255)          ggccgcacgatgccagccagcggcggcCTGACGGTGGAGCAGATGCAAAACCAGATGAACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACt                             >  1:3460952‑M2/28‑100 (MQ=255)          ggccgcacgatgccagccagcggcggcCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATACACCTGTACCAc                              >  1:1905748‑M2/28‑99 (MQ=255)          ggccgcacgatgccagccagcggcggcCTGACCGTGGAGCAGATGAAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACt                             >  1:38997‑M2/28‑100 (MQ=255)          ggccgcacgatgccagccagcggcggcCTGACCGTGGAGCAGATGAAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACt                             >  2:604810‑M2/28‑100 (MQ=255)           gccgcacgatgccagccagcggcggcCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTg                            >  2:3804793‑M2/27‑100 (MQ=255)            aggccgcacgatgccagccagcggcCTGACGGTGGCGCAGATGCAAAGCCAGATGAACCCGGTATACACGCCGGCGCGAAAAATTCACCTGTACCACTg                            >  1:189532‑M2/26‑99 (MQ=255)             cgcacgatgccagccagcggcggcCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCg                          >  1:1608243‑M2/25‑100 (MQ=255)                                gcggcCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATACACCTGTACCACTGCGAACATCGCGGCATGCCGCt       >  1:2731652‑M2/6‑100 (MQ=255)                                 cggcCTGACCGTGGAGTAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTg      <  2:2279028‑M2/96‑1 (MQ=255)                                 cggcCTGACCGTGGAGAAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGAGACCATCGCCGCCTg            >  2:3540538‑M2/5‑94 (MQ=255)                                  ggcCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTgg     >  1:1652257‑M2/4‑100 (MQ=255)                                  ggcCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTg      >  2:3018869‑M2/4‑99 (MQ=255)                                  ggcCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTACGACCATCGCGGCCTGCCGCTg      >  1:432082‑M2/4‑99 (MQ=255)                                  ggcCTGACCGTGGAGCAGATGCAAAAACAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTgg     >  1:2387587‑M2/4‑100 (MQ=255)                                   gcCTGACCGTGGAGCAGATGCAAAACCAGATGTACTCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGc    <  1:1754209‑M2/98‑1 (MQ=255)                                   gcCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCTGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGc    <  1:1173592‑M2/98‑1 (MQ=255)                                   gcCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGTCCATCGCGGCCTGCCGCTGGc    <  2:769638‑M2/98‑1 (MQ=255)                                   gcCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGc    <  2:2318264‑M2/98‑1 (MQ=255)                                   gcCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGc    <  2:1806880‑M2/98‑1 (MQ=255)                                   gcCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGc    <  2:147668‑M2/98‑1 (MQ=255)                                   gcCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGc    <  1:3085903‑M2/98‑1 (MQ=255)                                   gcCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGc    <  2:872332‑M2/98‑1 (MQ=255)                                    cCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGcc   <  2:282193‑M2/99‑1 (MQ=255)                                     cTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGccc  <  2:2868908/100‑1 (MQ=31)                                     |                                                                                                    AGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCCC  >  NC_000913/3765516‑3765651

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.