New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 2252796 =NA (NA)18 (0.140) 11/164 NT NA noncoding (1/91 nt) RIP157 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site RIP157 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
?NC_000913 2252829 = NA (NA)noncoding (34/91 nt) RIP157 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site RIP157 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site

Only 100 of 197 total aligned reads displayed.

GCTTAAACAACCCTACCCTGTCTGCCGATAACGCGCTTTCATTAGTGCCAATGGTGTAACAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTGCGCATCAGGCAATGACACTCAAGCTAAACCAATAAAGAACCCGGCAATGGTC  >  NC_000913/2252730‑2252928
                                                                                                   |                                                                                                   
gtgtcattgcctgatgcgtaagcttatcaggcctacatttacttgctgaaattgcctgatttgtagGCCGGATGCGACGCTTAACGCGTCTTATCCGGcc                                                                                                     >  1:2594619‑M1/67‑100 (MQ=255)
gCTTAAACAACCCTACCCTGTCTGCCGATAACGCGCTTTCATTAGTGCCAATGGTGTAACAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGcc                                                                                                     >  2:2800183/1‑100 (MQ=255)
gCTTAAACAACCCTACCCTGTCTGCCGATAACGCGCTTTCATTAGTGCCAATGGTGTAACAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGcc                                                                                                     <  2:866683/100‑1 (MQ=255)
gCTTAAACAACCCTACCCTGTCTGCCGATAACGCGCTTTCATTAGTGCCAATGGTGTAACAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGcc                                                                                                     >  2:2991933/1‑100 (MQ=255)
gCTTAAACAACCCTACCCTGTCTGCCGATAACGCGCTTTCATTAGTGCCAATGGTGTAACAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGcc                                                                                                     <  2:191947/100‑1 (MQ=255)
 tgtcattgcctgatgcgcaagcttatcaggcctacatttacttgctgaaattgcctgatttgtaggccggatgcgacgcttaacgcgtcttatccggcCt                                                                                                    <  2:1238544‑M2/2‑1 (MQ=255)
 tgtcattgcctgatgcgcaagcttatcaggcctacatttacttgctgaaattgcctgatttgtagGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCt                                                                                                    >  1:3130420‑M1/66‑100 (MQ=255)
 cTTAAACAACCCTACCCTGTCTGCCGATAACGCGCTTTCATTAGTGCCAATGGTGTAACAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCt                                                                                                    >  1:2527255/1‑100 (MQ=255)
  ttAAACAACCCTACCCTGTCTGCCGATAACGCGCTTTCATTAGTGCCAATGGTGTAACAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTa                                                                                                   >  1:3680994/1‑100 (MQ=255)
   tAAACAACCCTACCCTGTCTGCCGATAACGCGCTTTCATTAGTGCCAATGGTATAACAATGTTACCGAATGCGACGCTTAACGCGTCTTATCCGGCCTAc                                                                                                  >  1:173530/1‑100 (MQ=255)
    cattgcttgatgcgcaagcttatcaggcctacatttatttgctgaaattgcctgatttgtagGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTACa                                                                                                 >  1:733435‑M1/63‑100 (MQ=255)
     aacaacCCTACCCTGTCTGCCGATAACGCGCTTTCATTAGTGCCAATGGTGTAACAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTACaa                                                                                                >  2:3644034/1‑100 (MQ=255)
         accctaccctGTCTGCCGATAACGCGCTTTCATTAGTGCCAATGGTGTAACAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCa                                                                                            >  2:352173/1‑100 (MQ=255)
         accctaccctGTCTGCCGATAACGCGCTTTCATTAGTGCCAATGGTGTAACAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCa                                                                                            <  1:2945008/100‑1 (MQ=255)
         accctaccctGTCTGCCGATAACGCGCTTTCATTAGTGCCAATGGTGTAACAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCa                                                                                            >  2:2121867/1‑100 (MQ=255)
          ctgatgcgcaagcttatcaggcctacatttacttgctgaaattgcctgatttgtagGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCAg                                                                                           >  1:2361652‑M1/57‑100 (MQ=255)
          ccctaccctGTCTGCCGATAACGCGCTTTCATTAGTGCCAATGGTGTAACAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCAg                                                                                           >  2:962793/1‑100 (MQ=255)
          ccctaccctGTCTGCCGATAACGCGCTTTCATTAGTGCCAATGGTGTAACAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCAg                                                                                           <  2:897054/100‑1 (MQ=255)
           cctaccctGTCTGCCGATAACGCGCTTTCATTAGTTCCAATGGTGTAACAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCAgg                                                                                          <  1:1674471/100‑1 (MQ=255)
           cctaccctGTCTGCCGATAACGCGCTTTCATTAGTGCCAATGGTGTAACAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCAgg                                                                                          <  2:1175459/100‑1 (MQ=255)
           cctaccctGTCTGCCGATAACGCGCTTTCATTAGTGCCAATGGTGTAACAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCAgg                                                                                          <  2:2631402/100‑1 (MQ=255)
           cctaccctGTCTGCCGATAACGCGCTTTCATTAGTGCCAATGGTGTAACAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCAgg                                                                                          <  1:1435/100‑1 (MQ=255)
             ttccctTTGTGCCGATAACGCGCTTTCTGTGGTGCCAATGGTGTAACAATTTTGCCGGATGCGACGCTTAACGCGTCTTATTCGTCCTACAAATCAAGc                                                                                         <  2:1279904/97‑1 (MQ=25)
              accctGTCTGCCGATAACGCGCTTTCATTAGTGCCAATGGTGTAACAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCaa                                                                                       >  1:3857166/1‑100 (MQ=255)
                cctGTCTGCCGATAACGCGCTTTCATTAGTGCCAATGGTGTAACAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAAtt                                                                                     <  1:1365748/100‑1 (MQ=255)
                  tGTCTGCCGATAGCGCGCTTTCATTAGTGCCAATGGTGTAACAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTc                                                                                   >  1:2575232/1‑100 (MQ=255)
                  tGTCTGCCGATAACGCGCTTTCATTAGTGCCAATGGTGTAACAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTc                                                                                   >  2:3382823/1‑100 (MQ=255)
                   gTCTGCCGATAACGCGCTTTCATTAGTGGTAATGGTGTAACAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCa                                                                                  <  1:3126962/100‑1 (MQ=255)
                   gTCTGCCGATAACGCGCTTTCATTAGTGCCAATGGTGTAACAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCa                                                                                  <  2:2481065/100‑1 (MQ=255)
                   gTCTGCCGATAACGCGCTTTCATTAGTGCCAATGGTGTAACAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCa                                                                                  <  2:3836609/100‑1 (MQ=255)
                    tCTGCCGATAACGCGCTTTCATTAGTGCCAATGATGTAACAATGTTGCCGGATGCGACGATTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCa                                                                                  >  2:137028/1‑99 (MQ=255)
                     cTGCCGATAACGCGCTTTCATTAGTGCCAATTGTGTAACAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCa                                                                                  <  1:247745/98‑1 (MQ=255)
                     cTGCCGATAACGCGCTTTCATTAGTGCCAATGGTGTAACAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGc                                                                                >  2:518144/1‑100 (MQ=255)
                     cTGCCGATAACGCGCTTTCATTAGTGCCAATGGTGTAACAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGc                                                                                <  2:722381/100‑1 (MQ=255)
                      tGCCGATAACGCGCTTTCATTAGTGCCAATGGTGTAACAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGCa                                                                               <  2:3277864/100‑1 (MQ=255)
                        ccGATAACGCGCTTTCATTAGTGCCAATGGTGTAACAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAg                                                                             <  1:3003637/100‑1 (MQ=255)
                        ccGATAACGCGCTTTCATTAGTGCCAATGGTGTAACAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAg                                                                             >  2:2942466/1‑100 (MQ=255)
                          gATAACGCGCTTTCATTAGTGCCAATGGTGTAACAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAGTa                                                                           >  2:2923014/1‑100 (MQ=255)
                              aCGCGCTTTCATTAGTGCCAATGGTGTAACAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGTCCTACAAATCAGGCAATTTCAGCAAGTAAAt                                                                        >  2:123330/1‑99 (MQ=255)
                               cgcgCTTTCATTAGTGCCAATGGTGTAACAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGt                                                                      <  2:3504817/100‑1 (MQ=255)
                                gcgcTTTCATTAGTGCCAATGGTGTAACAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTa                                                                     <  2:3438003/100‑1 (MQ=255)
                                  gcTTTCATTAGTGCCAATGGTGTAACAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAgg                                                                   <  1:3141597/100‑1 (MQ=255)
                                   cTTTCATTAGTGCCAATGGTGTAACAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTTCAAATCAGGCAATTTCAGCAAGTAAATGTAGGc                                                                  <  2:2563722/100‑1 (MQ=255)
                                    tttCATTAGTGCCAATGGTGTAACAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGcc                                                                 >  1:129950/1‑100 (MQ=255)
                                       cATTAGTGCCAATGGTGTAACAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGa                                                              <  1:522658/100‑1 (MQ=255)
                                           aGTGCCAATGGTGTAACAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAg                                                          <  1:1653179/100‑1 (MQ=255)
                                             tGCCAATGGTGTAACAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGTCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCt                                                        <  1:1057936/100‑1 (MQ=255)
                                             tGCCAATGGTGTAACAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCt                                                        >  2:157654/1‑100 (MQ=255)
                                              gCCAATGGTGTAACAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCtt                                                       >  2:2432606/1‑100 (MQ=255)
                                               ccAATGGTGTAACAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCtt                                                       >  1:3790763/1‑99 (MQ=255)
                                               ccAATGGTGTAACAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTg                                                      >  1:3217731/1‑100 (MQ=255)
                                                cAATGGTGTAACAATGTTGCCGGATGCGATGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTgc                                                     <  1:3541747/100‑1 (MQ=255)
                                                cAATGGTGTAACAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTgc                                                     <  2:2338470/100‑1 (MQ=255)
                                                   tGGTGTAACAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTGCGCa                                                  <  2:2544585/100‑1 (MQ=255)
                                                     gtgtAACAATGTTGCCGGGTGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTGGCGCATc                                                <  1:2049126/100‑1 (MQ=255)
                                                      tgtAACAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTGCGCATCa                                               >  1:3518040/1‑100 (MQ=255)
                                                        tAACAATTTTGCCGGATTCGTCGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTGCGCATCAg                                              <  1:720809/99‑1 (MQ=255)
                                                         aaCAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTGCGCATCAGGc                                            <  1:417379/100‑1 (MQ=255)
                                                         aaCAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTGCGCATCAGGc                                            >  2:3755594/1‑100 (MQ=255)
                                                             aTGTTGCCGGATGCTGCGCTTAAAGCGTCTTATCCGGCCTAGAAATCAGGAAATTTCAGCAAGTAAATGTAGGCTTGATAAGCTTGCGCATCAGGCAATg                                        <  2:2470563/100‑1 (MQ=38)
                                                             aTGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTGCGCATCAGGCAATg                                        <  1:12476/100‑1 (MQ=255)
                                                              tGTTGCCGGATGCTAAGCTTAACGCGTCTTATCCGGTCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTGCGCATCAGGCAATg                                        <  1:1782129/99‑1 (MQ=255)
                                                              tGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCTTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTGCGCATCAGGCAATGa                                       <  1:818411/100‑1 (MQ=255)
                                                              tGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTGCGCATCAGGCAATGa                                       <  1:2796134/100‑1 (MQ=255)
                                                              tGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTGCGCATCAGGCAATGa                                       <  1:2432628/100‑1 (MQ=255)
                                                               gTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTGCGCATCAGGCAATGac                                      >  1:1560657/1‑100 (MQ=255)
                                                               gTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTAAGCAAGTAAATGTAGGCCTGATAAGCTTGCGCATCAGGCAATGac                                      >  1:48962/1‑100 (MQ=255)
                                                                ttGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTGCGCATCAGGCAATGata                                     <  1:2643602/100‑3 (MQ=255)
                                                                 tGCTGGATGTGACGTTTAACGCGTTTTATTCGGCTTTCAAATTAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTGCGCATCAGGCAATGacac                                    <  1:2221743/100‑1 (MQ=37)
                                                                   ccggataagacgcgttaagcgtcgcatccggcCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTGCGCATCAGGCAATGACACTc                                  >  1:2320419‑M2/33‑100 (MQ=255)
                                                                   ccggataagacgcgttaagcgtcgcatccggcCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTGCGCATCAGGCAATGACACTc                                  >  1:1886995‑M2/33‑100 (MQ=255)
                                                                   CCGGATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTGCGCATCAGGCAATGACACTc                                  >  1:741996‑M1/1‑100 (MQ=255)
                                                                     ggataagacgcgttaagcgtcgcatccggcCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTGCGCATCAGGCAATGACACTCaa                                >  2:1862095‑M2/31‑100 (MQ=255)
                                                                       ATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTGCTCATCAGGCAATGACACTCAAGc                              >  2:2270421‑M1/1‑100 (MQ=255)
                                                                       ATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTGCGCATCAGGCAATGACACTCAAGc                              >  2:2250497‑M1/1‑100 (MQ=255)
                                                                       ATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTGCGCATCAGGCAATGACACTCAAGc                              >  2:3859736‑M1/1‑100 (MQ=255)
                                                                          cGACGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTGCGCATCAGGCAATGACACTCAAGCTaa                           >  1:1641469/1‑100 (MQ=255)
                                                                          cGACGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTGCGCATCAGGCAATGACACTCAAGCTaa                           >  1:3699322/1‑100 (MQ=255)
                                                                          cGACGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGAAAGTAAATATAGGACTGATAAGCTTGCGCATCAGGCAATGACACTCAAGCTaa                           >  1:1088085/1‑100 (MQ=255)
                                                                           gACGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTGCGCATCAGGCAATGACACTCAAGCTaaa                          <  1:2000868/100‑1 (MQ=255)
                                                                           gACGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTGCGCATCAGGCAATGACACTCAAGCTaaa                          >  1:3086329/1‑100 (MQ=255)
                                                                            acgcgttaagcgtcgcatccggcCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTGCGCATCAGGCAATGACACTCAAGCTAAAc                         >  1:503743‑M2/24‑100 (MQ=255)
                                                                            aCGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTGCGCATCAGGCAATGACACTCAAGCTAAAc                         >  1:671593/1‑100 (MQ=255)
                                                                            aCGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTGCGCATCAGGCAATGACACTCAAGCTAAAc                         <  2:546463/100‑1 (MQ=255)
                                                                            aCGCTTAACGCGTCTTATCCGGACTACAAATCAGTCAATTTAAGCAAGTAAATGTAGGCCTGATAAGCTTGCGCATCAGGCAATGACACTCAAGATAAAc                         <  2:1884720/100‑1 (MQ=38)
                                                                             cGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTGCGCATCAGGCAATGACACTCAAGCTAAAcc                        <  1:1171208/100‑1 (MQ=255)
                                                                                ttAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTGCGCATCAGGCAATGACACTCAAGCTAAACCAAt                     >  1:1263874/1‑100 (MQ=255)
                                                                                ttAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTGCGCATCAGGCAATGACACTCAAGCTAAACCAAt                     <  2:645667/100‑1 (MQ=255)
                                                                                  aaCGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGTAAGTAAATGTAGGCCTGATAAGCTTGCGCATCAGGCAATGACACTCAAGCTAAACCAATaa                   <  1:2703023/100‑1 (MQ=255)
                                                                                     gcgTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTGCGCATCAGGCAATGACACTCAAGCTAAACCAATAAAGa                <  2:3014256/100‑1 (MQ=255)
                                                                                            atccggcCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTGCGCATCAGGCAATGACACTCAAGCTAAACCAATAAAGAACCCGGc         <  2:1517783‑M2/93‑1 (MQ=255)
                                                                                            atccggcCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTGCGCATCAGGCAATGACACTCAAGCTAAACCAATAAAGAACCCGGc         >  1:988844‑M2/8‑100 (MQ=255)
                                                                                              ccggcCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTGCGCATCAGGCAATGACACTCAAGCTAAACCAATAAAGAACCCGGCaa       >  1:3459240‑M2/6‑100 (MQ=255)
                                                                                              ccggcCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTGCGCATCAGGCAATGACACTCAAGCTAAACCAATAAAGAACCCGGCaa       <  1:3895968‑M2/95‑1 (MQ=255)
                                                                                               cggcCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTGCGCATCAGGCAATGACACTCAAGCTAAACCAATAAAGAACCCGGCAAt      <  2:3188013‑M2/96‑1 (MQ=255)
                                                                                                ggcCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTGCGCATCAGGCAATGACACTCAAGCTAAACCAATAAAGAACCCGGCAATg     <  2:3849099‑M2/97‑1 (MQ=255)
                                                                                                 gcCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTGCGCATCAGGCAATGACACTCAAGCTAAACCAATAAAGAACCCGGCAATg     <  1:1501240‑M2/97‑1 (MQ=255)
                                                                                                  gcTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTGCGCATCAGGCAATGACACTCAAGCTAAACCAATAAAGAACCCGGCAATGGt   <  2:141485/99‑1 (MQ=255)
                                                                                                  cCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTGCGCATCAGGCAATGACACTCAAGCTAAACCAATAAAGAACCCGGCAATGGt   >  1:2832453‑M2/2‑100 (MQ=255)
                                                                                                   cTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTGCGCATCAGGCAATGACACTCAAGCTAAACCAATAAAGAACCCGGCAATGGTc  <  1:3386194/100‑1 (MQ=255)
                                                                                                   |                                                                                                   
GCTTAAACAACCCTACCCTGTCTGCCGATAACGCGCTTTCATTAGTGCCAATGGTGTAACAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTGCGCATCAGGCAATGACACTCAAGCTAAACCAATAAAGAACCCGGCAATGGTC  >  NC_000913/2252730‑2252928

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.