| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 3,171,858 | A→T | 16.1% | intergenic (+25/+21) | qseC → / ← ygiZ | quorum sensing sensory histidine kinase in two‑component regulatory system with QseB/inner membrane protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,171,858 | 0 | A | T | 16.1% | 442.1 / 70.3 | 179 | intergenic (+25/+21) | qseC/ygiZ | quorum sensing sensory histidine kinase in two‑component regulatory system with QseB/inner membrane protein |
| Reads supporting (aligned to +/- strand): ref base A (84/66); new base T (16/13); total (100/79) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.08e-01 | |||||||||||
Only 100 of 194 total aligned reads displayed.
GCCAAATTGCATGGCATGAATGTTGAATTTGGGAATGCGGAACAAGGTGGATTTGAGGCGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGCCGTTAAAACGACTCTCATAGATTTTACTAATAGCAAAATATAAACCGTCCCCAAAAAAGCCACCAACCACAAACCAGACAAATACCGAGCGAGAATACATATACC > NC_000913/3171759‑3171957 | gcgaaaTTGCATGACATGAATGTAAAATTTGGGAATGCCGAACAAGGTGGATTTGAGGCGAAGGTAAGCTGGTAACTTCTCTGTCTATAAGAGCCGTTaa > 2:2416965/4‑100 (MQ=255)gCCAAATTGCATGGCATGAATGTTGAATTTGGGAATGCGGAACAAGGTGGATTTGAGGCGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGCCGTTaa > 2:2025445/1‑100 (MQ=255)gCCAAATTGCATGGCATGAATGTTGAATTTGGGAATGCGGAACAAGGTGGATTTGAGGCGAAGGTAAGCTGGTAACTTCTCTATCTATGAGAGCCGTTaa > 1:876704/1‑100 (MQ=255) ccAAATTGCATGGCATGAATGTTGAATTTGGGAATGCGGAACAAGGTGGATTTGAGGCGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGCCGTTaaa < 2:2804051/100‑1 (MQ=255) cAAATTGCATTGCATGAATTTTTAATTTGTCAATGCCGAACAAGGTTGATTTGAGGCTAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGCCGTTaaaa < 2:3512800/100‑1 (MQ=255) cAAATTGCATGGCATGAATGTTGAATTTGGGAATGCGGAACAAGGTGGATTTGAGGCGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGCCGTTaaaa > 1:3256261/1‑100 (MQ=255) aaaTTGCATGGCATGAATGTTGAATTTGGGAATGCGGAACAAGGTGGATTTGAGGCGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGCCGTTAAAAc < 2:2541865/100‑1 (MQ=255) aaaTTGCATGGCATGAATGTTGAATTTGGGAATGCGGAAAAAGGTGGATTTGAGGAGAAGGTAAGATGGTAACTTGTTTGTCTATGAGAGACGTTaa > 2:3581917/1‑97 (MQ=255) ttGCATGGCATGAATGTTGAATTTGGGAATGCGGAACAAGGTGGATTTGAGGCGAAGGTACGCTGGTAACTTCTCTGTCTATGAGAGCCGTTAAAACg < 2:2240771/98‑1 (MQ=255) ttGCATGGCATGAATGTTGAATTTGGGAATGCGGAACAAGGTGGATTTGAGGCGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGCCGTTAAAACGAc < 1:291501/100‑1 (MQ=255) gcatggcatgAATGTTTAATTTGGGAATGCGGATCAAGGTGGATTTGAGGCTAAGGTAAGCTGGTAACTTTTCTTTCTATGAGGTCCGGTAAAACg < 2:1574540/96‑1 (MQ=255) catggcatgAATGTTGAATTTGGGAATGCGGAACAAGGTGGATTTGAGGCGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGCCGTTAAAACGActct > 2:2369164/1‑100 (MQ=255) atggcatgAATGTTGAATTTGGGAATGCGGAACAAGGTGGATTTGAGGCGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGCCGTTAAAACGACtctc < 2:1969325/100‑1 (MQ=255) ggcatgAATGTTGAATTTGGGAATGCGGAACAAGGTGGATTTGAGGCGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGCCGTTAAAACGACTCTCa < 2:1021427/99‑1 (MQ=255) ggcatgAATGTTGAATTTGGGAACGAGGACCAATGTGGATTTGAGGCGAAGGTAAGGTGCTATCTTCTCTTTCTCTGTGAGTCGTTTTAACGGCTCTCAt < 2:3174074/100‑1 (MQ=255) gcatgAATGTTGAATTTGGGGATGCGGAACAAGGTGGATTTGAGGCGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGCCGTTAAAACGACTCTCATa > 2:2391252/1‑100 (MQ=255) gcatgAATGTTGAATTTGGGAATGCGGAACAAGGTGGATTTGAGGCGAAGGTAAGCTGGTAACTACTCTATCTATGAGAGCCGTTAAAACGACTCTCATa > 1:125495/1‑100 (MQ=255) gcatgAATGTTGAATTTGGGAATGCGAAACAAGGTGGATTTGAGGCGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGTCGTTTTAACGGCTCTCATa < 2:3734611/100‑1 (MQ=38) catgAATGTTGAATTTGGGAATGCGGAACAAGGTGGATTTGAGGCGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGTCGTTTTAACGGCTCTCATAg < 2:2857399/100‑1 (MQ=38) atgAATGTTGAATTTGGGAATGCGGAACAAGGTGGATTTGAGGCGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGTCGTTTTAACGGCTCTCATAGa < 1:1483656/100‑1 (MQ=38) atgAATGTTGAATTTGGGAATGCGGAAAAAGGTGGATTTGAGGCGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGTCGTTTTAACGGCTCTCATAg < 2:1060268/99‑1 (MQ=38) tgAATGTTGAATTTGGGAATGCGGAACAAGGTGGATTTGAGGCGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGCCGTTAAAACGACTCTCATAGAt > 2:3238982/1‑100 (MQ=255) gAATGTTGAATTTGGGAATAAAGAACAAGATGGATTAGATGCGAAGGTAAGATGGTAACTTCTCTGTCTATGAGAGCAGTAAAAACGACTCCCATAg > 2:3669066/1‑97 (MQ=255) aTGTTGAATTTGGGAATGCGGAACAAGGTGGATTTGAGGCGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGCCGTTAAAACGACTCTCATAGAtttt < 2:1415883/100‑1 (MQ=255) gTTGAATTTGGGAATGCGGAACAAGGTGGATTTGAGGCGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGTCGTTTTAACGGCTCTCATAGacagaga < 1:2153217/100‑7 (MQ=25) gTTGAATTTGGGAATGCGGAACAAGGTGGATTTGAGGCGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGCCGTTAAAACGACTCTCATAGATTTTAc > 2:567564/1‑100 (MQ=255) gTTGAATTTGGGAATGCGGAACAAGGTGGATTTGAGGCGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGCCGTTAAAACGACTCTCATAGATTTTAc < 2:2627317/100‑1 (MQ=255) ttGAATTTGGGTATGTGGAATAAGGTGGATTTGAGGAGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGCCGTTAAAACGACTCTCATAGATTTTAc < 1:1821255/99‑1 (MQ=255) ttGAATTTGGGAATGCGGAACAAGGTGGATTTGAGGCGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGCCGTTAAAACGACTCTCATAGATTTTACt > 1:1947268/1‑100 (MQ=255) gAATTTGGGAATGCGGAACAAGGTGGATTTGAGGCGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGCCGTTAAAACGACTCTCATAGATTTTACTaa > 2:78761/1‑100 (MQ=255) gAATTTGGGAATGCGGAACAAGGTGGATTTGAGGCGAAGGTAAGCTGGTAACATCTCTGACTATGAGAGCAGTTAAAACGACTCTCATAGATTTTACTaa > 2:1865304/1‑100 (MQ=255) aaTTTGGGAATGCGGAACAAGGTGGATTTGAGGCGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGCCGTTAAAACGACTCTCATAGATTTTACTAAt < 2:3083145/100‑1 (MQ=255) aTTTGGGAATGCGGAACAAGGTGGATTTGAGGCGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGCCGTTAAAACGACTCTCATAGATTTTACTAATa < 1:78764/100‑1 (MQ=255) aTTTGGGAATGCGGAACAAGGTGGATTTGAGGCGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGCCGTTAAAACGACTCTCATAGATTTTACTAATa > 1:819852/1‑100 (MQ=255) aTTTGGGAATGCGGAACAAGGTGGATTTGAGGCGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGCCGTTAAAACGACTCTCATAGATTTTACTAATa > 2:495130/1‑100 (MQ=255) aTTTGGGAATGCGGAACAAGGTGGATTTGAGGCGAAGGTAAGCTGGAAACTTCTCTGTCTATGAGAGCCGTTAAAACGACTCTCATAGATTTTACTAATa > 2:2171281/1‑100 (MQ=255) tttGGGAATGCGGAACAAGGTGGATTTGAGGCGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGCCGTTAAAACGACTCTCATAGATTTTACTAATAg > 1:787444/1‑100 (MQ=255) tGCGGAACAAGGTGGATTTGAGGCGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGCCGTTAAAACGACTCTCATAGATTTTACTAATAGCAAAatat < 1:666567/100‑1 (MQ=255) tGCGGAACAAGGTGGATTTGAGGCGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGCCGTTAAAACGACTCTCATAGATTTTACTAATAGCAAAatat > 2:735559/1‑100 (MQ=255) gAACAAGGTGGATTTGAGGCGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGCCGTTAAAACGACTCTCATAGATTTTACTAATAGCAAAATATAAAc > 1:2062214/1‑100 (MQ=255) gAACAAGGTGGATTTGAGGCGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGCCGTTAAAACGACTCTCATAGATTTTACTAATAGCAAAATATAAAc < 1:914558/100‑1 (MQ=255) gAACAAGGTGGATTTGAGGCGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAACCGTTAAAACGAATATCATAGATTTTACTAATAGCAAAATATAAAc > 1:1230201/1‑100 (MQ=255) aaCAAGGTGGATTTGAGGCGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGCGCCGTTAAAACGACTCTCATAGATTTTACTAATAGCAAAATATAAAcc < 2:3526996/100‑1 (MQ=255) aCAAGGTGGATTTGAGGCGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGACGTTAAAACGACTCTCATAGATTTTACTAATAGCAAAATATAAAGCg > 2:1712373/1‑100 (MQ=255) aCAAGGTGGATTTGAAGCGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGACGTTAAAACGACTCTCATACATTTTAATCATAGCAAAATAAAAccc > 2:1259268/1‑99 (MQ=255) cAAGGTGGATTTGAGGCGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGCCGTTAAAACGACTCTCATAGATTTTACTAATAGCAAAATATAAACCGt > 2:3849459/1‑100 (MQ=255) ggTGGATTTGAGGCGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGCCGTTAAAACGACTCTCATAGATTTTACTAATAGCAAAATATAAACCGTacc > 2:2324590/1‑100 (MQ=255) gTGGATTTGAGGCGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGCCGTTAAAACGACTCTCATAGATTTTACTAATAGCAAAATATAAACCGTc > 2:894773/1‑97 (MQ=255) tGGATTTGAGGCGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGCCGTTAAAACGACTCTCATAGATTTTACTAATAGCAAAATATAAACCGTCCCCa < 2:1673142/100‑1 (MQ=255) tttGAGGCGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGCCGTTAAAACGACTCTCATAGATTTTACTAATAGTAAAATATAAACCGTCCCCaaaaa > 1:554718/1‑100 (MQ=255) tttGAGGCGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGCCGTTAAAACGACTCTCATAGATTTTACTAATAGCAAAATATAAACCGTCCCCaaaaa < 2:2218503/100‑1 (MQ=255) tttGAGGCGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGCCGTTAAAACGACTCTCATAGATTTTACTAATAGCAAAATATAAACCGTCCCCaaaaa > 2:3821458/1‑100 (MQ=255) tGAGTCGAAGGTAAGCTGATAACTTCTCTGTTTATGAAAGCCGTTAAAACTACTCTCATAGATTTTACTAATAGCAAAATATAAACCGTCCCCAAAAAAg < 2:195181/100‑1 (MQ=255) ggCGAAGGTAATCTGGTAACTTCTCTGTCTATGAGAGCCGTTAAAACGACTCTCATAGATTTTACTAATAGCAAAATATAAACCGTCCCCAAAAAAGc < 2:67136/98‑1 (MQ=255) ggCGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGCCGTTAAAACGACTCTCATAGATTTTACTAATAGCGAAATATAAACCGTCCCCAAAAACGc > 2:58192/1‑98 (MQ=255) ggCGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGCCGTTAAAACGACTCTCATAGATTTTACTAATAGCAAAATATAAACCGTCCCCAAAAAAgaga > 1:685750/1‑97 (MQ=255) ggCGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGCCGTTAAAACGACTCTCATAGATTTTACTAATAGCAAAATATAAACCGTCCCCAAAAAAGcca > 2:96924/1‑100 (MQ=255) ggCGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGCCGTTAAAACGACTCTCATAGATTTTACTAATAGCAAAATATAAACCGTCCCCAAAAAAGcca > 2:45144/1‑100 (MQ=255) ggCGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGCCGTTAAAACGACTCTCATAGATTTTACTAATAGCAAAATATAAACCGTCCCCAAAAAAGcca > 1:1471476/1‑100 (MQ=255) gAAGGTGAGCTGTTGATTTCTCGGTCTATGAGAGCCGTTAAATCGCCTCTCATAGATGTTATTAATCGCATCATCTAAACTGTCCCCATAAAAGccac < 2:2516232/98‑1 (MQ=255) aaGGTAAGCTGGTAACTTCTCTGTCTATGATAGCCGTTAAAACGATTCTCATAGATTTTACTAATAGCAAAATATAAACCGTCCCCAAAAAAGccacca < 1:3014774/99‑1 (MQ=255) aGGTAAGCTGGTAATTTCTCTGTCTATGAGAGCCGTTAAAACGACTCTCATAGATTTTACTAATAGCAAAATATAAACCGTCCCCAAAAAAGCCaccaac < 1:1731376/100‑1 (MQ=255) ggTAAGCTGGTAACTTCTCTGTCTATGAGAGCCGTTAAAACGACTCTCATAGATTTTACTAATAGCAAAATATAAACCGAAAAAAAAAAAGCCaccaacc < 2:3894423/100‑1 (MQ=255) gTAAGCTGGTATCTTCTCTGTCTATGAGAGTCGTTAAAACTACTCTCATAGATTTTACTACTAGCATCTTATTAACTGTTTCCAAAAAAGCCaccaacc < 2:3434756/99‑1 (MQ=255) tAAGCTGGTAACTTCTCTGTCTATGAGAGCCGTTAAAACGACTCTCATAGATTTTACTAATAGCAAAATATAAACCGTCCCCAAAAAAGCCACCAACcac > 1:2746212/1‑100 (MQ=255) tAAGCTGGTAACTTCTCTGTCTATGAGAGCCGTTAAAACGACTCTCATAGATTTTACTAATAGCAAAATATAAACCGTCCCCAAAAAAGCCACCAACcac > 2:2908444/1‑100 (MQ=255) aaGCTGGTCACTTCTCTGTCTATGAGAGCCGTTAAAACGACTATCATAGATTTTACTAATAGCCAAATATAAACAGTACACAAAAAATACACAAACcaca > 2:622278/1‑100 (MQ=255) gCTGGTAACTTCTCTGTCTATGAGAGCCGTTAAAACGACTCTCATAGATTTTACTAATAGCAAAATATAAACCGTCCCCAAAAAAGCCACCAACCACaaa > 1:12278/1‑100 (MQ=255) tGGTAACTTCTCTGTCTATGAGAGCCGTTAAAACGACTCTCATAGATTTTACTAATAGCAAAATATAAACCGTCCCCAAAAAAGCCACCAACCACAAAcc < 1:29083/100‑1 (MQ=255) ggTAACTTCTCTGTCTATGAGAGCCGTTAAAACGACTCTCATAGATTTTACTAATAGCAAAATATAAACCGTCCCCAAAAAAGCCACCAACCACAAACCa > 1:3137797/1‑100 (MQ=255) tAACTTCTCTGTCTATGAGAGCCGTTAAAACGACTCTCATAGATTTTACTAATAGCAAAATATAAACCGTCCCCAAAAAAGCCACCAACCACAAACCAGa < 2:3358760/100‑1 (MQ=255) aaCTTCTCTGTCTATGAGAGCCGTTAAAACGACTCTCATAGATTTTACTAATAGCAAAATATAAACCGTCCCCAAAAAAGCCACCAACCACAAACCAGAc < 1:2418778/100‑1 (MQ=255) aCTTCTCTGTCTATGAGAGCCGTTAAAACGACTCTCATAGATTTTACTAATAGCAAAATATAAACCGTCCCCAAAAAAGCCACCAACCACAAACCAGACa > 1:2582574/1‑100 (MQ=255) aCTTCTCTGTCTATGAGAGCCGTTAAAACGACTCTCATAGATTTTACTAATAGCAAAATATAAACCGTCCCCAAAAAAGCCACCAACCACAAACCAGACa < 1:2369186/100‑1 (MQ=255) aCTTCTCTGTCTATGAGAGCCGTTAAAACGACTCTCATAGATTTTACTAATAGCAAAATATAAACCGTCCCCAAAAAAGCCACCAACCACAAACCAGACa > 2:1992156/1‑100 (MQ=255) gtaaaatCTATGAGAGTCGTTTTAACGGCTCTCATAGATTTTACTAATAGCAAAATATAAACCGTCCCCAAAAAAGCCACCAACCACAAACCAGACAAAt > 1:3181956/7‑100 (MQ=25) ctctGTCTATGAGAGCCGTTAAAACGACTCTCATAGATTTTACTAATAGCAAAATATAAACCGTCCCCAAAAAAGCCACCAACCACAAACCAGACAAATa > 2:1756251/1‑100 (MQ=255) ctctGTCTATGAGAGCCGTTAAAACGACTCTCATAGATTTTACTAATAGCAAAATATAAACCGTCCCCAAAAAAGCCACAAACCACAAACcaaacaaa > 2:2038274/1‑98 (MQ=255) cagTCTATGAGAGCCGTTAAAACGCCTCTCATAGATAAAAAAAAAAACAAAATATAAACCGTCCCCAAAAAAGCCACCAACCACAAACCAGACAAATAcc < 2:3014148/98‑1 (MQ=255) aatCTATGAGAGTCGTTTTAACGGCTCTCATAGATTTTACTAATAGCAAAATATAAACAGTTCCCAAAAAAGCCAACAACCACAAAACAGAAAAATACcg > 2:2738713/3‑100 (MQ=21) gTCTATGAGAGCCGTTAAAACGACTCTCATAGATTTTACTAATAGCAAAATATAAACCGTCCCCAAAAAAGCCACCAACCACAAACCAGACAAATAcc > 2:1205431/1‑98 (MQ=255) tCTATAAGAGACGTTAAGACGATTCTCACAGATTTTACTAATAGCAAAATATAAAACTTCCCCAAAAAAGCCACCTTCCACAAACCAGACAAATACcgag < 2:108966/100‑1 (MQ=255) cTATGCGAGTCGTTTTAACGGCTCTCATAGATTTTACTAATAGCAAAAAATAAACCGTCCCCAAAAAAGCCACCAACCACAAACCAGACAAAAAcc > 2:2713088/1‑96 (MQ=37) cTATGAGAGTCGTTTTAACGGCTCTCATAGATTTTACTAATAGCAAAATATAAACCGTCCCCAAAAAAGCCACCAACAACAAACAAAAAAAATACcga > 1:3536713/1‑98 (MQ=25) cTATGAGAGCCGTTAAAACGACTCTCATAGATTTTACTAATAGCAAAATATAAACCGTCCCCAAAAAAGCCACCAACCACAAACCAGACAAATACcgagc > 1:3696285/1‑100 (MQ=255) tATGAGAGTCGTTTTAACGGCTCTCATAGATTTTACTAATAGCAAAATATAAACCGTCCCCAAAAAAGCCACCAACCACAAACCAGACAAATACcgagcg > 1:2194089/1‑100 (MQ=38) tATGAGAGTCGTTTTAACGGCTCTCATAGATTTTACTAATAGCAAAATATAAACCGTCCCCAAAAAAGCCACCAACCACAAACCAGACAAATACcgagcg > 2:836132/1‑100 (MQ=38) tATGAGAGCCGTTAAAACGACTCTCATAGATTTTACTAATAGCAAAATATAAACCGTCCCCAAAAAAGCCACCAACCAAAAACCAGACAAATACcgagcg > 1:1598045/1‑100 (MQ=255) aTGAGAGTCGTTTTAACGGCTCTCATAGATTTTACTAATAGCAAAATATAAACCGTCCCCAAAAAAGCCACCAACCACAAACCAGACAAATACcgagcga > 1:2787436/1‑100 (MQ=38) aTGAGAGTCGTTTTAACGGCTCTCATAGATTTTACTAATAGCAAAATATAAACCATCCCCAAAAAAGCCACCAACCACAAACCAGACAAATACcgagcga > 1:2242066/1‑100 (MQ=38) agagTCGTTTTAACGGCTCTCATAGATTTTACTAATAGCAAAATATAAACCGTCCCCAAAAAAGCCAACAACCACAAACCAGACAAATACCGAGCGAGaa > 2:3593193/1‑100 (MQ=38) gagCCGTTAAAACGACTCTCATAGATTTTACTAATAGCAAAATATAAACCGTCCCCAAAAAAGCCACCAACCACAAACCAGACAAATACCGAGCGAGAAt > 1:2405166/1‑100 (MQ=255) gagCCGTTAAAACGACTCTCATAGATTTTACTAATAGCAAAATATAAACCGTCCCCAAAAAAGCCACAAACCACAAACCAGACAAATACCGAGAGAGAAt > 2:2098904/1‑100 (MQ=255) agCCGTTAAAACGACTCTCATAGATTTTACTAATAGCAAAATATAAACCGTCCCCAAAAAAGCCACCAACCACAAACCAGACAAATACCGAGCGAGAAtn < 1:3819811/100‑2 (MQ=255) gCCGTTAAAACGACTCTCATAGATTTTACTAATAGCAAAATATAAACCGTCCCCAAAAAAGCCACCAACCACAAACCAGACAAATACCGAGCGAGAATAc < 1:2014656/100‑1 (MQ=255) ccGTTAAAACGACTCTCATAGATTTTACTAATAGCAAAATATAAACCGTCCCCAAAAAAGCCACCAACCACAAACCAGACAAATACCGAGCGAGAATACa < 1:96927/100‑1 (MQ=255) ccGTCAAAACGACTCGCATAGAGTTGAATAATAGCAAAATATAAACCGTCCNCAAGNAAGCCACNAANCACAAACCAGACANATACCGAGCGAGAATa < 2:3098665/98‑1 (MQ=255) cGTTAAAACGACTCTCATAGATTTTACTAATAGCAAAATATAAACCATCCCCAAAAAAGCCACCAACCACAAACCAGACAAATACCGAACGAAAATACat > 1:1451447/1‑100 (MQ=255) gTTAAAACGACTCTCATAGATTTTACTAATAGCAAAATATAAACCGTCCCCAAAAAAGCCACCAACCACAAACCAGACAAATACCGAGCGAGAATACata < 2:51369/100‑1 (MQ=255) aaaCGATTCTCATAGATTTTACTAGTAGCAAAATATAAACAGTCCACAAAAAAGCCACCAACCACAAACCAGACAATTACCGAGCGAGAATACATATAcc < 2:319679/100‑1 (MQ=255) | GCCAAATTGCATGGCATGAATGTTGAATTTGGGAATGCGGAACAAGGTGGATTTGAGGCGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGCCGTTAAAACGACTCTCATAGATTTTACTAATAGCAAAATATAAACCGTCCCCAAAAAAGCCACCAACCACAAACCAGACAAATACCGAGCGAGAATACATATACC > NC_000913/3171759‑3171957 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |