| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 3,705,984 | T→G | 30.1% | intergenic (‑194/+114) | dppB ← / ← dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,705,984 | 0 | T | G | 30.1% | 496.9 / 277.0 | 287 | intergenic (‑194/+114) | dppB/dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| Reads supporting (aligned to +/- strand): ref base T (93/107); new base G (76/10); total (169/118) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.48e-12 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.29e-05 | |||||||||||
Only 100 of 289 total aligned reads displayed.
TTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCT > NC_000913/3705885‑3706083 | gctgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCATTGTTTATGCCGGATGCGGCGTTAACGCCTTa > 1:1993627/1‑100 (MQ=255) tgcCGGATGGCGCTGCACGCAGAGGCATAGCGTCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATc < 1:522855/100‑1 (MQ=255) tgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATc < 1:2067364/100‑1 (MQ=255) gcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCATTGTTTATACCGGATGCGACGTTAACGCCTTATcc > 1:1943126/1‑100 (MQ=255) cGGATGGCGCTGTACGCAGAGTCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCgg < 2:3680894/100‑1 (MQ=255) cGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCACATTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCgg > 1:2094199/1‑100 (MQ=255) ggATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGc > 1:1585419/1‑100 (MQ=255) ggATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTGATCCGGc < 2:1118786/100‑1 (MQ=255) ggATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATAAGGCGTTAACGCCGCATCCGGc < 2:3618483/100‑1 (MQ=37) gATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGcc < 2:251542/100‑1 (MQ=255) aTGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGcc < 1:3780093/99‑1 (MQ=255) gcgcTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATAAGGCGTTAACGCCGCATCCGGCATaaa < 1:2142847/100‑3 (MQ=25) cgcTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑aa > 2:779110/1‑100 (MQ=255) gcTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑aaa > 2:1200600/1‑100 (MQ=255) cTGCACGCAGAGGCACAGCGCCACAGGATATACAGATTGTTGACAAAGGCCGCGTCGTTTACGCCGCATGCGGCGTTAACGCCTCATCCGGACTAC‑aaa > 2:1713954/1‑99 (MQ=18) gCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATc > 1:908798/1‑100 (MQ=255) cACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCg < 1:415612/100‑1 (MQ=255) cGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTg > 2:2074319/1‑100 (MQ=255) gCAGAGGCACAGCTCTACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGc < 1:3488582/100‑1 (MQ=255) gCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGc < 2:2838934/100‑1 (MQ=255) gCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGc < 2:3339669/100‑1 (MQ=255) ggCACAGCGCCACCGGGTATACAGATTGTTTACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAAtt < 1:1107384/100‑1 (MQ=255) ggCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAAtt > 2:3782376/1‑100 (MQ=255) gCACAGCGCAACCGGGTATACAGATTGTTTACAAAGTGTGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAAtcc < 1:2655158/100‑3 (MQ=18) cacaGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCa < 2:414433/100‑1 (MQ=255) cacaGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCa > 2:1227680/1‑100 (MQ=255) cacaGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCa < 1:1743513/100‑1 (MQ=255) gcgcCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATAc > 2:1802213/1‑100 (MQ=255) gcgcCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATAc > 2:571346/1‑100 (MQ=255) gcCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACAt > 1:781340/1‑100 (MQ=255) ccACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACAtt < 1:3307646/100‑1 (MQ=255) cACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTg > 1:2690150/1‑100 (MQ=255) ccGGTTATACAGATTGTTGACAAATTTCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGc < 1:3398284/99‑1 (MQ=255) cGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAg < 1:2261436/100‑1 (MQ=255) ggcataCAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGTAGa‑a > 2:2942291/4‑100 (MQ=255) aCAGATTGTTGACAAAGTGCGCTATGTTTATGCCGGATGCAGAGTTAACGCCTAATCCGGCCTAA‑AAAATCGTGCAAATTAAATATATTGCAGA‑AT‑TTTc > 2:860138/1‑100 (MQ=17) cAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑TTTC‑‑g < 1:2027931/100‑1 (MQ=255) gATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑TTTC‑‑GTa < 1:1683849/100‑1 (MQ=255) tgttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑TTTC‑‑GTAGGc < 1:1906276/100‑1 (MQ=255) gttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑TTTC‑‑GTAGGcc < 1:2914105/100‑1 (MQ=255) ttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATTGTGCAAATTCAATACATTGCAGA‑AT‑TTTC‑‑GTAGGCCt > 2:48179/1‑100 (MQ=255) ttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑TTTC‑‑GTAGGCCt > 2:1525194/1‑100 (MQ=255) atctcacaGTCCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTCTCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑TTTC‑‑GTAGGCCt < 2:3271554/93‑1 (MQ=18) gACAAAGTGCGCTTTGTTTATGCCGGATGCGGTGTTAACACCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑TTTC‑‑GTAGGCCTGa < 2:2752734/100‑1 (MQ=255) gACAAAGTGCGCTGTGTTTATGCCGGATGCGGAGTAAACGCCTTATCGGGCGTAG‑AAAATCGTGGAAATTCAACATATGGCACA‑GT‑TATT‑‑GTAgg > 2:2468206/1‑95 (MQ=14) aCAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑TTTC‑‑GTAGGCCTGAt < 1:3460860/100‑1 (MQ=255) cAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑TTTC‑‑GTAGGCCtagat > 1:3271586/1‑96 (MQ=255) cAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑TTTC‑‑GTAGGCCTGATa < 2:2889410/100‑1 (MQ=255) gTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑TTTC‑‑GTAGGCCTGATAAGCg < 1:246085/100‑1 (MQ=255) tGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAAACGAAAAAATTAAATACATTACAGA‑AA‑TTTC‑‑GTAGGCCTGATAAGCg > 1:230252/1‑99 (MQ=17) gcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAgc > 2:2302199/1‑100 (MQ=255) gcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAgc < 2:3330813/100‑1 (MQ=255) cTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAgcg > 1:1172899/1‑100 (MQ=255) cTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAgcg > 1:1099675/1‑100 (MQ=255) cTTTGTTTATGACGGATGCGGCGTTAACGCCATATCCAGTCTAA‑AAAATCGTGCAAATTGAATACATTGCAGA‑AT‑TTTT‑‑GTAGGCGTGATAAGCGGAgt < 2:587324/99‑2 (MQ=25) tttGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAgcgc > 1:2432653/1‑100 (MQ=255) tttGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAgcgc < 1:1822863/100‑1 (MQ=255) cttttgtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAAGCATGAAAATTCAATATATTGCAGG‑AG‑CTGC‑‑GTAGGCCTGATAAGCGTAgcgc > 1:2784324/10‑100 (MQ=17) ttttgtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAAAAATCTTGCCAATTCAATATATTGCAGG‑AC‑CAT‑‑‑GTAGGCCTGATAAGCGTAGCGCa > 1:3615220/9‑100 (MQ=18) tGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCAt > 2:1263790/1‑100 (MQ=255) ttgtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAAACATGCAAATTCAATAGATTGCAGAGAT‑TAT‑‑‑GTAGGCCTGATAAGCGTAGCGCATc < 1:2862793/94‑1 (MQ=17) gTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑ATTC‑‑GTAGGCCTGATAAGCGGAGCGCATc > 1:2634574/1‑100 (MQ=255) tgtaggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAAGCATGCAAATTCAATATATTGCAGA‑GT‑TCAC‑‑GTAGGCCTGATAAGCGTAGCGCATCa > 1:691795/6‑100 (MQ=14) gtaggCCGGATAAGGCGTTAACGCCGCATCCGGCATAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAg > 1:3028124/5‑100 (MQ=18) taggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑CAAACTTTGCAAATTCAATATATTGC‑‑A‑AT‑CTCCGTGTAGGCCTGATAAGCGTAGCGCATCAgg > 2:2095046/4‑100 (MQ=18) aggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAATCATGAAAATTCAATACATTGCAAG‑AT‑TTTC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGc > 1:1522145/3‑100 (MQ=14) aggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAACCTTGCTAATTCAATATATTGCAGG‑GA‑CTAT‑‑GTAGGCCTGATAAGCATAGCGCATCAGGc > 1:3165231/3‑100 (MQ=18) tGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCa > 2:3561352/1‑100 (MQ=255) ggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCTAATTCAATATGTTGCAGA‑AA‑CCTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 2:2504201/2‑100 (MQ=18) ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAAAAATCTTGCCAATTCAATATATTGCAGG‑AC‑CAT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 2:2806148/2‑100 (MQ=18) ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAAAAATCTTGCCAATTCAATATATTGCAGA‑A‑‑CCAA‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 1:858175/2‑100 (MQ=17) ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAGTTCGTGCAAATTCAATAAATTGCA‑A‑TA‑TGAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGcga > 1:2364922/2‑98 (MQ=18) ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAATTGTGTAAATTCAATAAATTGATCG‑AT‑CCAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 1:2602120/2‑100 (MQ=21) ggCCGGATAAGGCGTTAACGCCGCATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCACATCAGGCa > 2:2172666/2‑100 (MQ=18) ccggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAATCGCTTAAATTCAATATATTGCACA‑AT‑CCTC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCaat > 1:1647455/9‑98 (MQ=18) ccGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAtt > 1:3102731/1‑100 (MQ=255) cggataaggcgTTTACGCCGCATCCGGCCTAC‑AAATTC‑TGCAAATTCAACAAATTGC‑GA‑ATCCCTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAtttg > 1:2950735/8‑99 (MQ=18) cGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAttt > 1:60220/1‑100 (MQ=255) ggataaggcgTTTACGCCGCATCCGGCCTAC‑AAATTC‑TGCAAATTCAACAAATTGC‑GA‑ATCCCTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAtttgc > 2:1933976/7‑98 (MQ=18) ggataaggcgTTCACGCCGCATCCGGCCTACAAAAATCTTGCCAATTCAATATATTGCAGG‑AC‑CAT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 1:1605903/7‑100 (MQ=18) ggataaggcgTTCACGCCGCATCCGGCCTACAAAAATCTTGCCAATTCAATATATTGCAGG‑AC‑CAT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 2:314289/7‑100 (MQ=18) ggataaggcgTTCACGCCGCATACGGCCTAC‑AAAATTGTGTAAATTGAATAAATTGATCG‑AT‑CCAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 2:2683186/7‑100 (MQ=18) agataaggcgTTTCCGCCGCATCCGGCCTAC‑AAAATCGTGCTAATTACATATATTGCAGA‑AA‑CCTT‑‑GTCGGCATTATAAGCGTAGCACATCAGGCa > 2:2206371/7‑96 (MQ=12) gataaggcgTTCACGCCGCATCCGGCCTAC‑AAAATCGCTTAAATTCAATATATTGCACC‑AT‑CCTC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCaattct > 2:1985494/6‑95 (MQ=25) gataaggcgTTCACGCCGCATCCGGCCTAC‑‑AAATCATGCAAATCCAAAATATTGCAGG‑AG‑TTAT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAtttatg > 1:1355078/6‑97 (MQ=21) aTGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAtttt > 2:1622565/1‑98 (MQ=255) aTGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttg < 1:2571630/100‑1 (MQ=255) aTGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttg < 1:1197727/100‑1 (MQ=255) cggcgTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGTCATTtttgcct > 2:3175897/1‑100 (MQ=255) gcgTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgccctt < 2:1021377/100‑1 (MQ=255) cgTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttg < 1:2405534/100‑1 (MQ=255) gTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAGTTCAATACATTGCAGA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttgc < 1:1265379/100‑1 (MQ=255) tAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTCCCa > 2:3023718/1‑100 (MQ=255) tAACGCCTAATCCGGCCTAC‑AAAATCGTACAAATTCAACACATTGCAGA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGCGCACATCAGGCATCTTTTCCTTTGCCa > 2:3916067/1‑100 (MQ=18) aaCGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCAt > 2:1431861/1‑100 (MQ=255) aaCGCCTTATCCGACCTAC‑AAAATCGTGCAAATTCAATTCATTGCAGA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCAt > 2:2408127/1‑100 (MQ=255) aCGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATc < 1:2239539/100‑1 (MQ=255) cGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGTAGA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCa < 1:46533/100‑1 (MQ=255) cGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATAAGGCATTTTTGCCTTTGCCATCa > 1:1015696/1‑100 (MQ=255) gCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAg < 1:1463593/100‑1 (MQ=255) | TTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCT > NC_000913/3705885‑3706083 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |