| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 3,705,985 | T→C | 30.7% | intergenic (‑195/+113) | dppB ← / ← dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,705,985 | 0 | T | C | 30.7% | 441.0 / 239.7 | 287 | intergenic (‑195/+113) | dppB/dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| Reads supporting (aligned to +/- strand): ref base T (90/107); new base C (77/10); total (169/118) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.62e-12 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.66e-03 | |||||||||||
Only 100 of 291 total aligned reads displayed.
GCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTT > NC_000913/3705887‑3706084 | gctgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTa > 1:2410711/1‑100 (MQ=255) tgcCGGATGGCGCTGCACGCAGAGGCATAGCGTCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATc < 1:522855/100‑1 (MQ=255) tgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATc < 1:2067364/100‑1 (MQ=255) cGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCgg < 1:1515046/100‑1 (MQ=255) cGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCACATTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCgg > 1:2094199/1‑100 (MQ=255) ggATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTGATCCGGc < 2:1118786/100‑1 (MQ=255) ggATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATAAGGCGTTAACGCCGCATCCGGc < 2:212884/100‑1 (MQ=37) aTGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGcc < 1:3780093/99‑1 (MQ=255) aTGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATAAGGCGTTAACGCCGCATCCGGcat < 1:1762180/100‑3 (MQ=37) tGGCGCTTCACGTTTAGGTACAGCGCTATCGTGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATAAGGCGTTAACGCCGCATCCGGCAT‑‑a < 1:2349052/100‑1 (MQ=12) tGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑a < 2:46708/100‑1 (MQ=255) gcgcTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATAAGGCGTTAACGCCGCATCCGGCAT‑‑aaa < 2:2768549/100‑3 (MQ=25) gcgcTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATAAGGCGTTAACGCCGCATCCGGCAT‑‑aaa < 1:2142847/100‑3 (MQ=25) cgcTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAATGAGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑aa > 1:992641/1‑100 (MQ=255) gcTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑aaa > 2:1200600/1‑100 (MQ=255) gCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCATTATCCGGCCT‑‑AC‑AAAATc > 2:3172248/1‑100 (MQ=255) cACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCg < 1:415612/100‑1 (MQ=255) aCGCAGAGGCACAGGGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATACGGCCT‑‑CC‑AAAATCGt > 2:2862386/1‑100 (MQ=255) aCGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGt > 2:2514592/1‑100 (MQ=255) cAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCa > 2:166820/1‑100 (MQ=255) agagGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCaa > 2:3518179/1‑100 (MQ=255) ggCACAGCGCCACCGGGTATACAGATTGTTTACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAAtt < 1:1107384/100‑1 (MQ=255) gCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTc > 2:39680/1‑100 (MQ=255) gCACAGCGCAACCGGGTATACAGATTGTTTACAAAGTGTGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAAtcc < 1:2655158/100‑3 (MQ=18) cacaGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCa > 2:1227680/1‑100 (MQ=255) caGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAAt < 2:694770/100‑1 (MQ=255) aGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATa < 2:1793287/100‑1 (MQ=255) gcCACCGTGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACAt < 1:1936597/100‑1 (MQ=255) gcCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACAt > 2:3005950/1‑100 (MQ=255) gcCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACAt > 1:781340/1‑100 (MQ=255) ccACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACAtt < 1:3307646/100‑1 (MQ=255) cACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTg > 1:2690150/1‑100 (MQ=255) ccGGTTATACAGATTGTTGACAAATTTCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGc < 1:3398284/99‑1 (MQ=255) ataCAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑Ga‑a > 1:2722163/1‑97 (MQ=255) ataCAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑At‑tt > 2:1985342/1‑100 (MQ=255) cAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TTTCg < 2:1826718/100‑1 (MQ=255) gcataaaCAAAGCGCACTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TTTCGTAgg > 2:3770045/7‑100 (MQ=18) gcataaaCAAAGCGCACTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TTTCGTAgg > 2:3812832/7‑100 (MQ=18) gttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TTTCGTAGGcc < 1:291382/100‑1 (MQ=255) gttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AA‑TTTCGTAGGcc < 2:2044688/100‑1 (MQ=255) ttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TTTCGTAGGCCt > 2:1525194/1‑100 (MQ=255) aCAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TTTCGTAGGCCTGAt < 1:3460860/100‑1 (MQ=255) cAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TTTCGTAGGCCtagat > 1:3271586/1‑96 (MQ=255) aaGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TTTCGTAGGCCTGATAAg < 1:3469475/100‑1 (MQ=255) gTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TTTCGTAGGCCTGATAAGCg < 1:246085/100‑1 (MQ=255) tGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TTTCGTAGGCCTGATAAGCgg < 1:1694237/100‑1 (MQ=255) gcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TTTCGTAGGCCTGATAAGCGGAgc > 2:2706405/1‑100 (MQ=255) gcTTTGTTTATGCCGGATGCGGAGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TTTCGTAGGCCTGATAAGCGGAgc > 2:854370/1‑100 (MQ=255) gcTTTGTATATACCTGATGCTGCGTTAACACCTTATTCGGCCA‑‑AC‑AAAATAGTGCAAATTCATTATATTGCA‑GA‑AT‑TTTCGTAGTCCTGATCAGCgtata < 2:3336612/100‑5 (MQ=255) cTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TTTCGTAGGCCTGATAAGCGGAgcg < 2:581198/100‑1 (MQ=255) cTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TTTCGTAGGCCTGATAAGCGGAgcg > 1:1099675/1‑100 (MQ=255) cTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TTTCGTAGGCCTGATAAGCGGAgcg > 1:1172899/1‑100 (MQ=255) ttttgtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑‑ACAAAAATCTTGCCAATTCAATATATTGCA‑GG‑AC‑CAT‑GTAGGCCTGATAAGCGTAGCGCa > 1:3615220/9‑100 (MQ=18) tGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TTTCGTAGGCCTGATAAGCGGAGCGCAt > 2:1263790/1‑100 (MQ=255) gTTTATGCCGGATGCGGCGTTAACGCCTTCTCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TTTCGTAGGCCTGATAAGCGGAGCGCATc > 2:3658973/1‑100 (MQ=255) gTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑ATTCGTAGGCCTGATAAGCGGAGCGCATc > 1:2634574/1‑100 (MQ=255) tttATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCa < 2:3100519/100‑1 (MQ=255) tgtaggCCGGATAAGGCGTTTACGCCGCATCCGGCCT‑‑AC‑AAAAGCATGCAAATTCAATATATTGCA‑GA‑GT‑TCACGTAGGCCTGATAAGCGTAGCGCATCa > 1:691795/6‑100 (MQ=14) ttATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATAGCA‑GA‑AT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAg < 2:2414482/100‑1 (MQ=255) gtaggCCGGATAAGGCGTTAACGCCGCATCCGGCAT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAg > 1:3028124/5‑100 (MQ=18) taggCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑‑AC‑AAGATCGTGCAAATTCAATATATTGCA‑TG‑AA‑CCACGTAGGCCTGATAAACGTAGAGCATCaag > 1:1678594/4‑98 (MQ=14) aggCCGGATAAGGCGTTTACGCCGCATCTGGCCT‑‑AC‑AAATTCTTCCAAATTCAATATATTGCA‑GA‑AA‑TCATGTAGGCCTGATAAGCGTAGCGCATCAGGc > 2:2490923/3‑100 (MQ=18) aggCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑‑AC‑AAAACTGTGCAAATTCAATATATTGCA‑GG‑AA‑ACACGTAGGCCTGATAAGCGAAGCGCATCAGGc > 1:225326/3‑100 (MQ=18) aggCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑‑AC‑AAAACCTTGCTAATTCAATATATTGCA‑GG‑GA‑CTATGTAGGCCTGATAAGCATAGCGCATCAGGc > 1:3165231/3‑100 (MQ=18) aggCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑‑AC‑‑AAACCGCGCAAATTCAATATATTGCG‑GAGAA‑AAT‑GTAGGCCTGATAAGCGTAGCGCATCAGGct > 2:2174068/3‑99 (MQ=18) tGCCGGATGCGGCGTTAACGCCTTATACGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TTTCGTAAGCCTGATAAGCGGAGCGCATCAGGCa > 2:290824/1‑100 (MQ=255) ggCCGGATAAGGCGTTCGCGCCGCATCCGGCCT‑‑AC‑AAAAGTTTGCAAATTCAATAAATTGCA‑GA‑AT‑TCATGTAGGCCTGATAAGCGAAGCGCATCAGGCa > 2:3572191/2‑100 (MQ=18) ggCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑‑ACAAAAATCTTGCCAATTCAATATATTGCA‑GA‑A‑‑CCAAGTAGGCCTGATAAGCGTAGCGCATCAGGCa > 1:858175/2‑100 (MQ=17) ggCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑‑AC‑AAAATTGTGTAAATTCAATAAATTGAT‑CG‑AT‑CCACGTAGGCCTGATAAGCGTAGCGCATCAGGCa > 1:2602120/2‑100 (MQ=21) gCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCAt > 1:1455443/1‑100 (MQ=255) gCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑‑ACAAAAATCTTGCCAATTCAATATATTGCA‑GG‑AC‑CAT‑GTAGGCCTGATAAGCGTAGCGCATCAGGCag > 2:2806682/1‑99 (MQ=18) ccggataaggcgTTCACGCCGCATCCGGCCT‑‑AC‑AAAATCGCTTAAATTCAATATATTGCA‑CA‑AT‑CCTCGTAGGCCTGATAAGCGTAGCGCATCAGGCaat > 1:1647455/9‑98 (MQ=18) ccGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCAtt > 2:3260231/1‑100 (MQ=255) ccGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCAtt > 1:3102731/1‑100 (MQ=255) ccGGATAAGGCGTTTACGCCGCATCCGGCATAAAC‑AAAATCGTGCTAATTCAATATATTGCA‑GA‑AA‑CCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCa > 1:1961409/1‑100 (MQ=17) cggataaggcgTTTACGCCGCATCCGGCCT‑‑AC‑AAATTC‑TGCAAATTCAACAAATTGC‑‑GA‑ATCCCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAtttg > 1:2950735/8‑99 (MQ=18) cGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCAttt > 1:60220/1‑100 (MQ=255) ggataaggcgTTTACGCCGCATCCGGCCT‑‑AC‑AAATTC‑TGCAAATTCAACAAATTGC‑‑GA‑ATCCCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAtttgc > 2:2218687/7‑98 (MQ=21) ggataaggcgTTTACGCCGCATCCGGCCT‑‑AC‑AAAAGCGTGCAAATTCAATACATTGCATGG‑GC‑CAT‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAattt > 2:2089127/7‑100 (MQ=18) ggataaggcgTTCACGCCGCATCCGGCCT‑‑ACAAAAATCTTGCCAATTCAATATATTGCA‑GG‑AC‑CAT‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 1:1605903/7‑100 (MQ=18) ggataaggcgTTCACGCCGCATCCGGCCT‑‑AC‑GAAATCGTGCTAATTCAATATATTGTG‑GG‑CT‑CCACGTAGGCCTGATAAGCGTAGCGCATCAGGCagt > 1:2016312/7‑96 (MQ=18) ggataaggcgTTCACGCCGCATCCGGCCT‑‑AC‑AAAAACATGCAAATTCAATAGATTGCA‑GA‑GA‑TTATGTAGGCCTGATAAGCGTAGCGCATCAGGCAattt > 1:2278495/7‑100 (MQ=17) ggataaggcgTTAACGCCGCATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCAtttt > 2:534952/7‑100 (MQ=18) gataaggcgTTCACGCCGCATCCGGCCT‑‑AC‑‑AAATCATGCAAATCCAAAATATTGCA‑GG‑AG‑TTATGTAGGCCTGATAAGCGTAGCGCATCAGGCAtttatg > 1:1355078/6‑97 (MQ=21) aTGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttg < 1:1875461/100‑1 (MQ=255) aTGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttg < 1:1197727/100‑1 (MQ=255) aTGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttg < 1:2571630/100‑1 (MQ=255) cggcgTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcct > 2:2382609/1‑100 (MQ=255) cggcgTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcct < 1:2861154/100‑1 (MQ=255) cggcgTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcc < 2:3319050/99‑1 (MQ=255) gcgTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgccctt < 2:1021377/100‑1 (MQ=255) gTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAGTTCAATACATTGCA‑GA‑AT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttgc < 1:1265379/100‑1 (MQ=255) aaCGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCAt > 2:1431861/1‑100 (MQ=255) aCGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATc < 1:2239539/100‑1 (MQ=255) cGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGTA‑GA‑AT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCa < 1:46533/100‑1 (MQ=255) cGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TTTCGTAGGCCTGATAAGCGGAGCGCATAAGGCATTTTTGCCTTTGCCATCa > 1:1015696/1‑100 (MQ=255) gCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAg > 1:2389510/1‑100 (MQ=255) cTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAATc < 2:261438/100‑1 (MQ=255) ttATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCt < 1:1551482/100‑1 (MQ=255) tATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TAGCGTAGGCCTGATAAGCGGAGCGCATCAGGCAGTTTTGCCTTTGCCATCAGTGtt > 2:946154/1‑100 (MQ=17) | GCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTT > NC_000913/3705887‑3706084 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |