| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 3,706,048 | G→T | 24.8% | intergenic (‑258/+50) | dppB ← / ← dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,706,048 | 0 | G | T | 24.8% | 611.8 / 182.0 | 284 | intergenic (‑258/+50) | dppB/dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| Reads supporting (aligned to +/- strand): ref base G (101/107); new base T (67/2); total (175/109) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.61e-15 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 291 total aligned reads displayed.
TGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑T‑T‑‑‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGTGATGTTTGCCTAATGGATCAACC > NC_000913/3705949‑3706146 | tGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑T‑T‑‑‑TC‑‑GTAGGCCTGATAAGCgg < 1:3151016/100‑1 (MQ=255) gcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑T‑T‑‑‑TC‑‑GTAGGCCTGATAAGCGGAgc < 1:2370531/100‑1 (MQ=255) gcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑T‑T‑‑‑TC‑‑GTAGGCCTGATAAGCGGAgc > 2:2706405/1‑100 (MQ=255) cTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑T‑T‑‑‑TC‑‑GTAGGCCTGATAAGCGGAgcg > 1:1099675/1‑100 (MQ=255) cTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑T‑T‑‑‑TC‑‑GTAGGCCTGATAAGCGGAgcg > 1:1172899/1‑100 (MQ=255) atttgtaggCCGGATAAGGCGTTTACGCCGCATCTGGCCTAC‑AAATTCTTCCAAATTCAATATATTGCAGA‑AA‑T‑C‑‑‑AT‑‑GTAGGCCTGATAAGCGTAGCGCa > 1:2628907/9‑100 (MQ=18) tGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑T‑T‑‑‑TC‑‑GTAGGCCTGATAAGCGGAGCGCAt > 2:1263790/1‑100 (MQ=255) gTTTATGCCGGATGCGGCGTTAACGCCTTCTCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑T‑T‑‑‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATc > 2:3658973/1‑100 (MQ=255) tgtaggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAAGCATGCAAATTCAATATATTGCAGA‑GT‑T‑C‑‑‑AC‑‑GTAGGCCTGATAAGCGTAGCGCATCa > 1:691795/6‑100 (MQ=14) ttATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATAGCAGA‑AT‑T‑T‑‑‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAg < 2:2414482/100‑1 (MQ=255) gtaggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAACAGTGCAAATTCAATATATTGCAAT‑CT‑T‑C‑‑‑TG‑‑GTAGGCCTGATAAGCATCGCGCATCAg > 1:19611/5‑100 (MQ=18) gtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAAAAATCTTGCCAATTCAATATATTGCAGG‑AC‑C‑A‑‑‑T‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAg > 1:167847/5‑100 (MQ=18) taggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑CAAACTTTGCAAATTCAATATATTGC‑‑A‑AT‑C‑T‑‑‑CCGTGTAGGCCTGATAAGCGTAGCGCATCAgg > 2:2095046/4‑100 (MQ=18) nggCCGGATAAGGCGTTTACGCCGCATCTGGCCTAC‑AAATTCTTCCAAATTCAATATATTGCAGA‑AA‑T‑C‑‑‑AT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGc > 2:3164560/3‑100 (MQ=18) aggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAACTGTGCAAATTCAATATATTGCAGG‑AA‑A‑C‑‑‑AC‑‑GTAGGCCTGATAAGCGAAGCGCATCAGGc > 1:225326/3‑100 (MQ=18) tGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑T‑T‑‑‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCa > 2:3561352/1‑100 (MQ=255) tGCCGGATGCGGCGTTAACGCCTTATACGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑T‑T‑‑‑TC‑‑GTAAGCCTGATAAGCGGAGCGCATCAGGCa > 2:290824/1‑100 (MQ=255) ggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCTAATTCAATATGTTGCAGA‑AA‑C‑C‑‑‑TT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 2:2504201/2‑100 (MQ=18) ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAATTGTGTAAATTCAATAAATTGATCG‑AT‑C‑C‑‑‑AC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 2:2267474/2‑100 (MQ=21) gCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑T‑T‑‑‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAt > 2:1052906/1‑100 (MQ=255) gCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑T‑T‑‑‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAt > 1:1622948/1‑100 (MQ=255) gCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAATTC‑TGCAAATTCAACAAATTGC‑GA‑AT‑CCC‑‑‑TT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAtt > 1:3468936/1‑100 (MQ=18) gCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAAAAATCTTGCCAATTCAATATATTGCAGG‑AC‑C‑A‑‑‑T‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCag > 2:2806682/1‑99 (MQ=18) gCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAATCGCTTAAATTCAATATATTGCACC‑AT‑C‑C‑‑‑TC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCaa > 1:2550234/1‑99 (MQ=18) gCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAAACATGCAAATTCAATAGATTGCAGAGAT‑T‑A‑‑‑T‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCaa > 2:1964773/1‑99 (MQ=17) caggataaggcgTTCACGCCGCATCCTGCCTAC‑AAAAGCACGCAAATTCAATATATTGCAGA‑GA‑T‑G‑‑‑GC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAtt > 1:2072162/9‑100 (MQ=14) cggataaggcgTTTACGCCGCATCCGGCCTAC‑AAATTC‑TGCAAATTCAACAAATTGC‑GA‑ATCC‑C‑‑‑TT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAtttg > 1:2950735/8‑99 (MQ=18) cggataaggcgTTCACGCCGCATCCGGCCTACAAAAATCTTGCCAATTCAATATATTGCAGG‑AC‑C‑A‑‑‑T‑‑‑GTAAACCTGATAAGCGTAGCGCATCAGGCAgtt > 1:2114005/8‑100 (MQ=18) cggataaggcgTTCACGCCGCATCCGGCCTAC‑GAAATCGTGCTAATTCAATATATTGTGGG‑CT‑C‑C‑‑‑AC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgtt > 2:1017215/8‑100 (MQ=18) ggataaggcgTTTACGCCGCATCCGGCCTAC‑AAAAGCATGCAAATTCAATATATTGCAGA‑GT‑T‑C‑‑‑AC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 2:3331247/7‑100 (MQ=17) ggataaggcgTTTACGCCGCATCCGGCCTAC‑AAAAATGTGCAAATTCAATAAATTGCAAT‑TC‑AAC‑‑‑TT‑‑GTAGGCCTGATAAGCGCAGCGCATCAGGCAatt > 1:1546523/7‑100 (MQ=18) ggataaggcgTTTACGCCGCATCCGGCCTAC‑AAAAATGTGCAAATTCAATAAATTGC‑‑A‑AT‑T‑CAACTT‑‑GTAGGCCTGATAAGCGCAGCGCATCAGGCaatt > 1:440205/7‑97 (MQ=21) ggataaggcgTTCACGCCGCATCCGGCCTACAAAAATCTTGCCAATTCAATATATTGCAGG‑AC‑C‑A‑‑‑T‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 2:393529/7‑100 (MQ=18) ggataaggcgTTCACGCCGCATCCGGCCTACAAAAATCTTGCCAATTCAATATATTGCAGG‑AC‑C‑A‑‑‑T‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 1:1605903/7‑100 (MQ=18) ggataaggcgTTCACGCCGCATCCGGCCTAC‑GAAATCGTGCTAATTCAATATATTGTGGG‑CT‑C‑C‑‑‑AC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCagt > 1:2016312/7‑96 (MQ=18) ggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAGTCGTATAAATTCAATGTATTGCAGT‑TT‑A‑T‑‑‑TG‑‑GTAGGCCTGATAAGCGCAGCGCATCAGGCaatct > 2:59395/7‑96 (MQ=25) ggataaggcgTTAACGCCGCATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑T‑T‑‑‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAtttt > 2:534952/7‑100 (MQ=18) aTGCGGCGTTAACTCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑T‑T‑‑‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttg < 1:2408202/100‑1 (MQ=255) ttcggcgTTAACGACTTATCCGGCCTAC‑AAAATCGTGCAAATACAATACATTGCAGA‑AT‑T‑T‑‑‑TC‑‑GTAAGCCTGATAAGCGGAGCGCATCAGTCATTtttgc > 1:2650609/3‑100 (MQ=18) taaggcgTTTACGCCGCATCCGGCCTAC‑AAATTC‑TGCAAATTCAACAAATTGC‑GA‑AT‑C‑CC‑‑TT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAtttgcg > 1:1830812/4‑95 (MQ=18) cggcgTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑T‑T‑‑‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcct < 1:2861154/100‑1 (MQ=255) cggcgTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTACAGA‑AT‑T‑A‑‑‑TC‑‑ATAAACATAATAAGCGGAGCACATCAGGCATTtttgcct > 1:1370461/1‑100 (MQ=18) ggcgTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑T‑T‑‑‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctt < 2:1382847/100‑1 (MQ=255) ggcaaacatcacttcgaaaacgtctctatcgaataattaaaagccatacaagactgatggcaaaggcaaaaatGCCTGATAAGCGGAGCGCATCAGGCAt > 1:3102815‑M1/74‑100 (MQ=255) ggcaaacatcacttcgaaaacgtctctatcgaataattaaaagccatacaagactgatggcaaaggcaaaaatGCCTGATAAGCGGAGCGCATCAGGCAt > 1:1333199‑M1/74‑100 (MQ=255) gTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAGTTCAATACATTGCAGA‑AT‑T‑T‑‑‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttgc < 1:1265379/100‑1 (MQ=255) ttAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑T‑T‑‑‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttgcc < 1:1200613/100‑1 (MQ=255) acatcacttcgaaaacgtctctatcgaataattaaaagccatacaagactgatggcaaaggcaaaaatGCCTGATAAGCGGAGCGCATCAGGCATTtttg > 1:1786730‑M1/69‑100 (MQ=255) aaCGCCTTATCCGACCTAC‑AAAATCGTGCAAATTCAATTCATTGCAGA‑AT‑T‑T‑‑‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCAt > 2:2408127/1‑100 (MQ=255) cGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑T‑T‑‑‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATAAGGCATTTTTGCCTTTGCCATCa > 1:1015696/1‑100 (MQ=255) gCCTTATCCGGTCTAC‑AAAATCGTGCAAATTCAATACATTACAGA‑AT‑T‑T‑‑‑TC‑‑GTAGGCCTGATAAGCGGTGCGTATCAGGCATTTTTGCCTTTGCCATCAg < 2:915478/100‑1 (MQ=21) ccTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑T‑T‑‑‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGt < 2:1455428/100‑1 (MQ=255) aTCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑T‑T‑‑‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTg > 1:2584491/1‑100 (MQ=255) aTCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑T‑T‑‑‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTg < 2:3762462/100‑1 (MQ=255) aTCCGGCCTAA‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑T‑T‑‑‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTg < 1:802008/100‑1 (MQ=255) tCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑T‑T‑‑‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGt > 1:622140/1‑100 (MQ=255) cGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑T‑T‑‑‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTAt > 1:1044028/1‑100 (MQ=255) ggCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑T‑T‑‑‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATg < 1:564194/100‑1 (MQ=255) ccTAC‑AAAATCGTGCAAATTCTATACATTGCAGA‑AT‑T‑T‑‑‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGc > 2:3190842/1‑100 (MQ=255) ccTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑T‑T‑‑‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGc > 1:2723415/1‑100 (MQ=255) aC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑T‑T‑‑‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCtt < 2:1205512/99‑1 (MQ=255) aaaTCGTGCAAATTCAATACATTGCAGA‑AT‑T‑T‑‑‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTaa < 1:3313972/100‑1 (MQ=255) aaTCGTGCAAATTCAATACATTGCAGA‑AT‑T‑T‑‑‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAat < 1:887696/100‑1 (MQ=255) aaTCGTGCAAATTCAATACATTGCAGA‑AT‑T‑T‑‑‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAat < 2:2324906/100‑1 (MQ=255) gTGCAAATTCAATACATTGCAGA‑AT‑T‑T‑‑‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAattatt > 2:2149316/1‑100 (MQ=255) tGCAAATTCAATACATTGCAGA‑AT‑T‑T‑‑‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTc < 1:3714728/100‑1 (MQ=255) tGCAAATTCAATACATTGCAGA‑AT‑T‑T‑‑‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTc < 1:3215207/100‑1 (MQ=255) tGCAAATTCAATACACTGCAGA‑AT‑T‑T‑‑‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTc < 1:3868206/100‑1 (MQ=255) gCAAATTCAATACATTGCAGA‑AT‑T‑T‑‑‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCg < 1:3402754/100‑1 (MQ=255) cAAATTCAATACATTGCAGA‑AT‑T‑T‑‑‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAatagatcgg > 2:2603597/1‑93 (MQ=255) cAAATTCAATACATTGCAGA‑AT‑T‑T‑‑‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGa < 2:1989175/100‑1 (MQ=255) aaaTTCAATACATTGCAGA‑AT‑T‑T‑‑‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATAAGTCTTGTATGGCTTTTAATTATTCGAt > 1:484995/1‑100 (MQ=255) aaTACATTGCAGA‑AT‑T‑T‑‑‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGAc > 1:775810/1‑100 (MQ=255) ttGCAGA‑AT‑T‑T‑‑‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTc > 2:1691914/1‑100 (MQ=255) gCAGA‑AT‑T‑T‑‑‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGa > 2:1556844/1‑100 (MQ=255) gCAGA‑AT‑T‑T‑‑‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGa < 2:775801/100‑1 (MQ=255) gCAGA‑AT‑T‑T‑‑‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGa > 1:1472838/1‑100 (MQ=255) gCAGA‑AT‑T‑T‑‑‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGa > 1:2394447/1‑100 (MQ=255) gCAGA‑AT‑T‑T‑‑‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGa < 2:3025539/100‑1 (MQ=255) cAGA‑AT‑T‑T‑‑‑TC‑‑GTAGGCATGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGaa > 1:1457587/1‑100 (MQ=255) aGA‑AT‑T‑T‑‑‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAg < 1:668154/100‑1 (MQ=255) aGA‑AT‑T‑T‑‑‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAg < 1:3616515/100‑1 (MQ=255) a‑aT‑T‑T‑‑‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGTg < 2:3462058/100‑1 (MQ=255) t‑t‑t‑‑‑tC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGTGAt > 1:591142/1‑100 (MQ=255) t‑t‑t‑‑‑tC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGTGAt > 1:279712/1‑100 (MQ=255) t‑t‑‑‑tC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGTGATg < 2:3312742/100‑1 (MQ=255) t‑‑‑tC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGTGATGt < 2:2194126/100‑1 (MQ=255) gTAGGCTTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGTGATGTTTg < 1:2662858/100‑1 (MQ=255) gTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGTGATGTTTg < 1:2459902/100‑1 (MQ=255) aGGCTTGATAAGCGGAGCGGATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGTGATGTTTGcc < 2:3110103/100‑1 (MQ=255) ggCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGAGAtcggaagag > 2:799123/1‑92 (MQ=38) CTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGTGATGTTTGCCTAAt > 1:287892‑M1/1‑100 (MQ=255) CTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGTGATGTTTGCCTAAt < 1:2294402‑M1/100‑1 (MQ=255) tGATAAGCGGATCGCATCAGGCATTTTTTTCTTTTTCTTCTCTCTTATATGACTTTTAATTATTCGATACAGACGTTTTCTCAGTGATGTTTGCCTAAt > 2:1805848/1‑99 (MQ=255) GATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGTGATGTTTGCCTAATgg < 1:3045446‑M1/100‑1 (MQ=255) TAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGTGATGTTTGCCTAATGGAt > 1:39681‑M1/1‑100 (MQ=255) aaGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGTGATGTTTGCCTAATGGATc < 1:1691929/100‑1 (MQ=255) aGCGGAGCGCATCAGGCATTTTTGTCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGTGATGTTTGCCTAATGGATCa < 1:3584991/100‑1 (MQ=255) aGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGTGATTTTTGCCTAATGGATCa > 2:2489706/1‑100 (MQ=255) aGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGTGATGTTTGCCTAATGGATCa > 2:3583350/1‑100 (MQ=255) | TGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑T‑T‑‑‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGTGATGTTTGCCTAATGGATCAACC > NC_000913/3705949‑3706146 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |