| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 4,088,091 | G→C | 17.8% | intergenic (+34/+16) | yiiG → / ← frvR | DUF3829 family lipoprotein/putative frv operon regulator; contains a PTS EIIA domain |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,088,091 | 0 | G | C | 17.8% | 363.1 / 77.2 | 160 | intergenic (+34/+16) | yiiG/frvR | DUF3829 family lipoprotein/putative frv operon regulator; contains a PTS EIIA domain |
| Reads supporting (aligned to +/- strand): ref base G (56/74); new base C (17/11); total (75/85) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 9.89e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.34e-05 | |||||||||||
Only 100 of 172 total aligned reads displayed.
CTCTTTCCCGAGAGCATTACGCGAGTACAACGAAATGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGCATCCGACACAGTTCA‑CCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCTGACACAATATGC > NC_000913/4087994‑4088189 | ctctTTCCCGAGAGCATTACGCGAGTACAACGAAATGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATgcggcg < 1:2493515/100‑1 (MQ=255)ctctTTCCCGAGAGCATTACGCGAGTACAACGAAATGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATgcggcg < 2:3280095/100‑1 (MQ=255)ctctTTCCCGAGAGCATTACGCGAGTACAACGAAATGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATgcggcg < 1:1669570/100‑1 (MQ=255) tctTTCCCGAGAGCATTACGCGAGTACAACGAAATGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAGATGCAGTGTCGGATGCGgcgc < 1:819626/100‑1 (MQ=255) tttCCCGAGAGCATTACGCGAGTACAACGAAATGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGCa < 1:1638785/99‑1 (MQ=255) cGAGAGCATTATGCGAGTACAACGAAATGGTTGATGACTATAATAGCCTGCGTTAATCGTTTTTGATGATAAATGCAGTGTCGGATGCGCCGCATCCGac < 2:390057/100‑1 (MQ=255) cGAGAGCATTACGCGAGTACAACGAAATGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGCATCCGac < 1:647070/100‑1 (MQ=255) cGAGAGCATTACGCGAGTACAACGAAATGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGCCGCATCCGac < 2:3833717/100‑1 (MQ=255) cGAGAGCATTACGCGAGTACAACGAAATGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGCCGCATCCGac < 1:3454864/100‑1 (MQ=255) cGAGAGCATTACGCGAGTACAACGAAATGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGAGGCGGCGCATCCGac > 2:580166/1‑100 (MQ=255) gagaGTCTTGCGCGAGTACAGCGAAAGGGTTGATGACTATAATAGCCTGCGTTAACCGTTTTTGATGATAAATGCTGTGTTGGATGCGGCGCATCCGac < 2:2435975/99‑1 (MQ=255) gagaGCATTACGCGAGTACAACGAAATGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGCATCCGaca < 2:3568440/100‑1 (MQ=255) agagCATTACGCGAGTACAACGAAATGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGCATCCGacac < 2:1312947/100‑1 (MQ=255) agagCATTACGCGAGTACAACGAAATGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGCCGCATCCGacac < 1:2301564/100‑1 (MQ=255) agagCATTACGCGAGTACAACGAAATGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGCCGCATCCGacac < 1:397298/100‑1 (MQ=255) agagCATTACGCGAGTACAACGAAATGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGCCGCATCCGacac < 2:3047194/100‑1 (MQ=255) gCATTACGCGAGTACAACGAAATGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGCATCCGACACAGt > 2:1680967/1‑100 (MQ=255) cATTACGCGAGTACAACGAAATGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGCATCCGACACAGt < 2:2031217/99‑1 (MQ=255) tACGCGAGTACAACGAAATGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGCATCCGACACAGTTCA‑c < 1:3781678/100‑1 (MQ=255) aCGCGAGTACAACGAAATGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGCATCCGACACAGTTCA‑cc < 1:1883979/100‑1 (MQ=255) aCGCGAGTACAACGAAATGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGCATCCGACACAGTTCA‑cc < 1:3277486/100‑1 (MQ=255) gcgAGTACAACGAAATGGTTGATGACTATAATAGTCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGCATCCGACACAGTTCA‑cccc < 1:502729/100‑1 (MQ=255) actACAACGAAATGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGCATCCGACACAGTTCA‑CCCCTtg > 1:2648040/3‑100 (MQ=255) aCAACGAAATGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGCATCCGACACAGTTCA‑CCCCTTGTGa < 2:3407680/100‑1 (MQ=255) cAACGAAATGGTTGATGACTATAATAGGCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGCATCCGACACAGTTCA‑CCCCTTGTGaa < 2:3260457/100‑1 (MQ=255) cAACGAAATGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTTTCGGATGCGGCGCATCCGACACAGTTCA‑CCCCTTGTGaa > 1:629813/1‑100 (MQ=255) cAACGAAATGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGCATCCGACACAGTTCA‑CCCCTTGTGaa < 1:481757/100‑1 (MQ=255) cAACGAAATGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGAGTCGAAAGAGGCGCAACCGACACAGTTCA‑CCCCTTGTGaa > 1:233504/1‑100 (MQ=255) aaCGAAATGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGCATCCGACACAGTTCA‑CCCCTTGTGAAg < 2:934962/100‑1 (MQ=255) aCGAAATGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGCATCCGACACAGTTCA‑CCCCTTGTGAAGt < 1:2097703/100‑1 (MQ=255) aCGAAATGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGCATCCGACACAGTTCA‑CCCCTTGTGAAGt < 1:3850949/100‑1 (MQ=255) aCGAAATGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCACATCCGACACAGTTCA‑CCCCTTGTGAAGt > 1:34374/1‑100 (MQ=255) cGAAATGGTTTATAACTATAATAGCCTACGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGCAGCCGACACAGTTCA‑CCCCTTGTGAAGTa < 1:530106/100‑1 (MQ=255) gAAATGATTGATGTATATAATAGCCTGCGTTAAACGTTTTAGATACTATATCCTGTGTCGGATGCGGCGCATCCAACACAGTTAT‑CCACTTTTGa < 2:1998574/95‑1 (MQ=255) ggTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGCATCCGACACAGTTCA‑CCCCTTGTGAAGTAACTCCa < 1:2028357/100‑1 (MQ=255) ggTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGCATCCGACACAGTTCA‑CCCCTTGTGAAGTAACTCCa > 2:357089/1‑100 (MQ=255) ttaatgaCTATAATATCCTTCTTTAATCTTTTTTTTTTATAAATGCAGTGTCGGATGCGGCGCATCCGACACAGTTCA‑CCCCTTGTGAAGTAACTCCATa < 1:292874/97‑1 (MQ=255) gatgaCTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGTAGTGTCGGATGCGGCGCATCCGACACAGTTCA‑CCCCTTGTGAAGTAACTCCATaaa < 1:1105704/100‑1 (MQ=255) gatgaCTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGCATCCGACACAGTTCA‑CCCCTTGTGAAGTAACTCCATaaa > 1:35614/1‑100 (MQ=255) atgaCTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGCATCCGACACAGTTCA‑CCCCTTGTGAAGTAACTCCATAAAt < 1:1707204/100‑1 (MQ=255) tgaCTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGCATCCGACACAGTTCA‑CCCCTTGTGAAGTAACTCCATAAATg < 1:357882/100‑1 (MQ=255) gaCTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGAATGCGACGCATCCGACACAGTTCA‑CCCCTTGTGAAGTAACTCCATAAATGc > 1:1026136/1‑100 (MQ=255) aCTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGCATCCGACACAGTTCA‑CCCCTTGTGAAGTAACTCCATAAATGcc < 1:1068546/100‑1 (MQ=255) aCTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGCATCCGACACAGTTCA‑CCCCTTGTGAAGTAACTCCATAAATGcc < 2:2804388/100‑1 (MQ=255) cTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGCATCCGACACAGTTCA‑CCCCTTGTGAAGTAACTCCATAAATGCCt > 2:1416904/1‑100 (MQ=255) ataGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGCATCCGACACAGTTCA‑CCCCTTGTGAAGTAACTCCATAAATGCCTCatat < 2:1077322/100‑1 (MQ=255) taGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGCATCCGACACAGTTCA‑CCCCTTGTGAAGTAACTCCATAAATGCCTCATATc > 2:2866301/1‑100 (MQ=255) aGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGCATCCGACACAGTTCA‑CCCCTTGTGAAGTAACTCCATAAATGCCTCATATcc > 2:264746/1‑100 (MQ=255) gCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGCATCCGACACAGTTCA‑CCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCt > 1:3037265/1‑100 (MQ=255) cTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGCATCCGACACAGTTCA‑CCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGt > 2:3683950/1‑100 (MQ=255) tGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGCATCCGACACAGTTCA‑CCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGtt < 1:3788643/100‑1 (MQ=255) gCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGCATCCGACACAGTTCA‑CCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTa > 1:3603016/1‑100 (MQ=255) aaaCGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGCATCCGACACAGTTCA‑CCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCg < 2:539715/100‑1 (MQ=255) aaCGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGCATCCGACACAGTTCA‑CCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCgg < 1:3104551/100‑1 (MQ=255) aCGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGCATCCGACACAGTTCA‑CCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGc > 2:1790912/1‑100 (MQ=255) aCGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGCATCAGACACAGTTCA‑CCCCTTGTGAAGTAACTCGATAAATGTCTCTTATCCTGtt > 2:2480584/1‑92 (MQ=255) cGTTTTTGATGATAAATGCAGTGTCGGATGTGGCGTATCCGACACAGTTCA‑CCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCa < 1:687381/100‑1 (MQ=255) cGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGCATCCGACACAGTTCA‑CCCCTTTTGAAGTAACTCCATAGCTGCTTCATATCCTGTAAATCCGGc < 2:1568578/99‑1 (MQ=255) cGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGCATCCGACACAGTTCA‑CCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGc < 1:3128309/99‑1 (MQ=255) cGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGCATCCGACACAGTTCA‑CCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCa > 1:2059576/1‑100 (MQ=255) ttttGATGATAAATGCAGTGTCGGATGCGGCGCATCCGACACAGTTCA‑CCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCaata < 2:576893/100‑1 (MQ=255) tttGATGATAAATGCAGTGTCGGATGCGGCGCATCCGATATTGTTCA‑CCCCTTGTGAAGTAACTCCATACATGCCTCATATCCTGTTAACCCGGCaataa < 2:3173281/100‑1 (MQ=255) tttGATGATAAATGCAGTGTCGGATGCGGCGCATCCGACACAGTTCA‑CCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCaataa < 1:3167790/100‑1 (MQ=255) gatgatAGATGCAGTGTCGGATGCGGCGCATAAGACACAGTTCA‑CCACTTGTGAAGTGACTCCCTAATTGCATCATATTCTGTTAAGCCGGCaataa > 2:2157849/1‑97 (MQ=255) atgatAAATGCAGTGTCGGATGCGGCGCATCCGACACAGTTCA‑CCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAAtctc > 1:3103829/1‑100 (MQ=255) gatAAATGCAGTGTCGGATGCGGCGCATCCGACACCGTTCA‑CCCTTTGTGAAGTAACTCCATAAATGCCTCGTATACTGTTAACCCAGCAATAAtatc > 1:3720372/1‑98 (MQ=255) gatAAATGCAGTGTCGGATGCGGCGCATCCGACACAGTTCA‑CCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTccg > 2:1889750/1‑100 (MQ=255) gatAAATGCAGTGTCGGATGCGGCGCATCCGACACAGTTCA‑CCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTcc > 2:1236922/1‑99 (MQ=255) atAAATGCAGTGTCGGATGCGGCGCATCCGACACAGTTCA‑CCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTccgc > 1:3721625/1‑100 (MQ=255) aaTGCAGTGTCGGATGCGGCGCATCCGACACAGTTCA‑CCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCgg < 1:1565251/100‑1 (MQ=255) aaTGCAGTGTCGGATGCGGCGCATCCGACACAGTTCA‑CCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCgg > 2:408007/1‑100 (MQ=255) tGCAGTGTCGGATGCGGCGCATCCGACACAGTTCA‑CCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTACGCCGGAt > 2:3784900/1‑100 (MQ=255) gCAGTGTCGGATGCGGCGCATCCGACACAGTTCA‑CCCCTTGTTAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATg < 1:117403/100‑1 (MQ=255) gCAGTGTCGGATGCGGCGCATCCGACACAGTTCA‑CCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATg > 2:3055044/1‑100 (MQ=255) aGTGTCGGTTGCTGCGTATCCGACATAGTTCA‑CCTCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCt < 1:2038419/100‑1 (MQ=255) aGTGTCGGATGCGGCGCATCCGACACAGTTCA‑CCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGc > 1:2618185/1‑99 (MQ=255) aGTGTCGGATGCGGCGCATCCGACACAGTTCA‑CCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCt < 2:470293/100‑1 (MQ=255) aGTGTCGGATGCGGCGCATCCGACACAGTTAATCCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGc > 2:730828/1‑100 (MQ=255) gtgtCGGATGCGTCGCATCCGACACAGTTCA‑CCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCTg > 1:2572394/1‑100 (MQ=255) gtgtCGGATGCGCCGCATCCGACACAGTTCA‑CCCCTTGTGAAGTAACTCCATAGAAGCCTCATCTCGTGTTAACCCTGCAATAATGTCGGCCGGATTCt > 2:1505435/1‑99 (MQ=37) gtCGGATGCGGCGCATCCTACACAGTTCA‑CCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCTGac < 2:1501040/100‑1 (MQ=255) gtCGGATGCGCCGGATCCGACACAGTTCA‑CCCCTTGTGCAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCCCCGCCGGATGCTGac > 2:2416534/1‑100 (MQ=255) gtCGGATGCGCCGCATCCGACACAGTTCA‑CCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCTGac > 1:995233/1‑100 (MQ=255) gtCGGATGCGCCGCATCCGACACAGTTCA‑CCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCTGac > 1:1764556/1‑100 (MQ=255) gtCGGATGCGCCGCATCCGACACAGTTCA‑CCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCTGac > 2:424594/1‑100 (MQ=255) gtCGGATGCGCCGCATCCGACACAGTTCA‑CCCCTTGTGAAGTAACTCCATAAATGACTCATATCATGTTAACCCAACAATAATCTCCACCGGATGCTGac > 1:405747/1‑100 (MQ=255) gtCGGATGCGCCGCATCCGACACAGTTCA‑CAACTTGTGAAGAAACTCCGTAAATGCCTCTCATCCCGTTAATCCGGCAATAATCTCCGCCGGATTCTGac > 2:3310934/1‑100 (MQ=255) tCGGATGCGGCGCATCCGACACAGTTCA‑CCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCTGaca > 1:1389046/1‑100 (MQ=255) tCGGATGCGCCGCATCCGACACAGTTCA‑CCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCTGaca > 2:3894764/1‑100 (MQ=255) cGGATGCTGCGCATCCGACACAGTTCA‑CCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCTGaca < 2:2568254/99‑1 (MQ=255) cGGATGCGGCGCATCCGACACAGTTCA‑CCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCTGacac < 2:2618161/100‑1 (MQ=255) cGGATGCGGCGCATCCGACACAGTTCA‑CCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCTGacac < 1:1182406/100‑1 (MQ=255) gATGCGGCGCATCCGAAACAGTTCA‑CCCCTTGGGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCTGacac < 2:3847356/98‑1 (MQ=255) tGCGGCGCATCCGACACAGTTCA‑CCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCAGGCAATAATCTCCGCCGGATGCTGACACAata < 2:1364406/100‑1 (MQ=255) gcggcgCATCCGACACAGTTCA‑CCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCTGACACAatat > 1:1349395/1‑100 (MQ=255) gcggcgCATCCGACACAGTTCA‑CCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCTGACACAatat < 2:1799021/100‑1 (MQ=255) cggcgCCTCCGAAACAGTTGT‑CCCCTTGTGAAGTAACTCTATAAATGCCTCATATCCTGTTATTCCGGCATTAATTTCCGCCGGATGCTGACAAActat < 2:670584/99‑1 (MQ=255) cggcgCATCCGACACAGTTCA‑CCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCTGACACAATATg > 1:889394/1‑100 (MQ=255) ggcgCATCCGACACAGTTCA‑CCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCTGACACAATATGc > 2:1852550/1‑100 (MQ=255) ggcgCATCCGACACAGTTCA‑CCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCTGACACAATATGc > 2:779349/1‑100 (MQ=255) | CTCTTTCCCGAGAGCATTACGCGAGTACAACGAAATGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGCATCCGACACAGTTCA‑CCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCTGACACAATATGC > NC_000913/4087994‑4088189 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |