| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 2,589,125 | T→C | 16.6% | F511L (TTT→CTT) | acrD → | aminoglycoside/multidrug efflux system |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,589,125 | 0 | T | C | 16.6% | 270.9 / 47.3 | 126 | F511L (TTT→CTT) | acrD | aminoglycoside/multidrug efflux system |
| Reads supporting (aligned to +/- strand): ref base T (63/42); new base C (14/7); total (77/49) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.31e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.15e-01 | |||||||||||
Only 100 of 136 total aligned reads displayed.
TGGTGCTGTCAGTACTGGTAGCGATGATCCTCACTCCGGCTCTGTGTGCCACACTACTTAAGCCACTGAAAAAAGGTGAGCATCATGGGCAAAAAGGCTTTTTTGCCTGGTTTAACCAGATGTTTAACCGCAACGCCGAACGCTACGAAAAAGGGGTGGCGAAAATTCTCCACCGTAGCCTGCGCTGGATTGTGATTT > NC_000913/2589027‑2589224 | ggTGCTGTCAGTACTGGTAGCGATGATCCTCACTCCGGCTCTGTGTGCCACACTACTTAAGCCACTGAAAAAAGGTGAGCATCATGGGCAAAAAGGCttt > 2:3675185/1‑100 (MQ=255) ggTGCTGTCAGTACTGGTAGCGATGATCCTCACTCCGGCTCTGTGTACCACTCTACTTAAGCCGTTGAAAAAAGATGAGCATCATGGGCAAAAAGGCttt > 2:3053135/1‑100 (MQ=255) gCTGTCAGTACTGGTAGCGATGATCCTCACTCCGGCTCTGTGTGCCACACTACTTAAGCCACTGAAAAAAGGTGAGCATCATGGGCAAAAAGGCtttttt < 1:743377/100‑1 (MQ=255) gCTGTCAGTACTGGTAGCGATGATCCTCACTCCGGCTCTGTGTGCCACACTACTTAAGCCACTGAAAAAAGATGAGCATCATGGGCAAAAAGGCttttt > 1:3443609/1‑99 (MQ=255) gCTGTCAGTACCGGTAGCGATGATCCTCACTCCGGCTCTGTGTGCCACACTACTTAAGCCACTGAAAAAAGGTGAGCATCATGGGCAAAAAGGCtttttt > 2:5698/1‑100 (MQ=255) cTGTCAGTACTGGTAGCGATGATCCTCACTCCGGCTCTGTATGACACAATACTTAAGCCACTGAAAAAAGGTGAGCATCATGGGCAAAAAGGCtttttt > 2:2019552/1‑99 (MQ=255) tGTCAGTACTGGTAGCGATGATCCTCTCTCCGGCTCTGTGTGCCACACTACTTAAGCCACTGAAAAAAGGTGAGCATCATGGGCAAAAAGGCTTTTTTg < 1:2490792/99‑1 (MQ=255) tGTCAGTACTGGTAGCGATGATCCTCACTCCGGCTCTGTGTGCCACACTACTTAAGCCACTGAAAAAAGGTGAGCATCATGGGCAAAAAGGCTTTTTTGc < 1:3012951/100‑1 (MQ=255) tGTCAGTACTGGTAGCGATGATCCTCACTCCGGCTCTGTGTGCCACACTACTTAAGCCACTGAAAAAAGGTGAGCATCATGGGCAAAAAGGCTTTTTTGc < 2:94471/100‑1 (MQ=255) gTCAGTACTGGTAGCGATGTTCCTCACTCCGGCTCTGTGTGCCACACTACTTAAGCCACTGAAAAAAGGTGAGCATCATGGGCAAAAAAGCCTTTTTGcc < 1:2321340/100‑1 (MQ=255) gTCAGTACTGGTAGCGATGATCCTCACTCCGGCTCTGTGTGCCACACTACTTAAGCCACTGAAAAAAGGTGAGCATCATGGGCAAAAAAGCCTTTTTGcc < 1:1375850/100‑1 (MQ=255) gTCAGTACTGGTAGCGATGATCCTCACTCCGGCTCTGTGTGCCACACTACTTAAGCCACTGAAAAAAGGTGAGCATCATGGGCAAAAAAGCCTTTTTGcc < 2:262511/100‑1 (MQ=255) tCAGTACTGGTAGCGATGATCCTCACTCCGGCTCTGTGTGCCACACTACTTAAGCCACTGAAAAAAGGTGAGCATCATGGGCAAAAAGGCTTTTTTGCCt > 1:1853305/1‑100 (MQ=255) tCAGTACTGGTAGCGATGATCCTCACTCCGGCTCTGTGTGCCACACTACTTAAGCCACTGAAAAAAGGTGAGCATCATGGGCAAAAAAGCCTTTTTGccc < 2:3540289/100‑2 (MQ=255) cAGTACTGGTAGCGATGATCCTCACTCCGGCTCTGTGTGCCACACTACTTAAGCCACTGAAAAAAGGTGAGCATCATGGGCAAAAAGGCTTTTTTGCCTg > 1:2464231/1‑100 (MQ=255) cAGTACTGGTAGCGATGATCCTCACTCCGGCTCTGTGTGCCACACTACTTAAGCCACTGAAAAAAGGTGAGCATCATGGGCAAAAAAGCCTTTTTGccca > 1:945855/1‑98 (MQ=255) cAGTACTGGTAGCGATGATCCTCACTCCGGCTCTGTGTGCCACACTACTTAAGCCACTGAAAAAAGGTGAGCATCATGGGCAAAAAAGCCTTTTTGccca < 2:945844/100‑3 (MQ=255) aGTACTGGTAGCGATGATCCTCACTCCGGCTCTGTGTGCCACACTACTTAAGCCACTGAAAAAAGGTGAGCATCATGGGCAAAAAGGCTTTTTTGCCTgg > 1:1778747/1‑100 (MQ=255) tACTGGTAGCGATGATCCTCACTCCGGCTCTGTGTGCCACACTACTTAAGCCACTGAAAAAAGGTGAGCATCATGGGCAAAAAGGCTTTTTTGCCTGGt > 2:3714150/1‑99 (MQ=255) aCTGGTAGCGATGATCCTCACTCCGGCTCTGTGTGCCACACTACTTAAGCCACTGAAAAAAGGTGAGCATCATGGGCAAAAAGGCTTTTTTGCCTGGttt < 2:3558350/100‑1 (MQ=255) ggTAGCGATGATCCTCACTCCGGCTCTGTGTGCCACACTACTTAAGCCACTGAAAAAAAGTGAACATCATAAGCAAAAAGGCTTTTTTGCCTGGTTTAAc > 1:187733/1‑100 (MQ=255) ggTAGCGATGATCCGCACTCCGGCTCTGTGTGCCACACTACTTAAGCCACTGAAAAAAGGTGAGCATCATGGGCAAAAAGGCTGTTTTGCCTGGTTTAAc > 2:2279277/1‑100 (MQ=255) gTAGCGATGATCCTCACTCCGGCTCTGTGTGCCACACTACTTAAGCCACTGAAAAAAGGTGAGCATCATGGGCAAAAAGGCTTTTTTGCCTGGTTTAAcc > 2:3883240/1‑100 (MQ=255) gTAGCGATGATCCTCACTCCGGCTATGTGTGCCACACTACTTAAGCCACTGAAAAAAGGTGAGCATCATGGGCAAAAAGGCTTTTTTGCCTGGTTTAAcc < 1:508001/100‑1 (MQ=255) tAGCGATGATCCTCACTCCGGCTCTGTGTGCCACACTACTTAAGCCACTGAAAAAAGGTGAGCATCATGGGCAAAAAGGCTTTTTTGCCTGGTTTAACCa > 2:530657/1‑100 (MQ=255) tAGCGATGATCCTCACTCCGGCTCTGTGTGCCACACTACTTAACCCACTGAAAAAAGGTGAGCATCATGGGCAAAAAGGCTTTTTTGCCTGGTTTAACCa > 2:539212/1‑100 (MQ=255) cGATGATCCTCACTCCGGCTCTGTGTGCCACACTACTTAAGCCACTGAAAAAAGGTGAGCATCATGGGCAAAAAGGCTTTTTTGCCTGGTTTAACCAGAt > 2:1516105/1‑100 (MQ=255) cGATGATCCTCACTCCGGCTCTGTGTGCCACACTACTTAAGCCACTGAAAAAAGGTGAGCATCATGGGCAAAAAGGCTTTTTTGCCTGGTTTAACCAGAt > 2:3854550/1‑100 (MQ=255) cGATGATCCTCACTCCGGCTCTGTGTGCCACACTACTTAAGCAACTGAAAAAAGGTGAGCATCATGGGCAAAAAGGCTTTTTTGCCTGGTTTAACCAGAt > 2:216446/1‑100 (MQ=255) gatgatCCTCACTCCGGCTCTGTGTGCCACACTACTTAAGCCACTGAAAAAAGGTGAGCATCATGGGCAAAAAGGCTTTTTTGCCTGGTTTAACCAGAt > 1:1851557/1‑99 (MQ=255) tgatTCTCACTCCGTCTCTGTGTGCCACACTACTTAAGCCACTGAAAAAAGGTGAGCATCATGGGCAAAAAGGCTTTTTTGCCTGGTTTAACCAGATGtt < 1:2534079/100‑1 (MQ=255) tgatCCTCACTCCGGCTCTGTGTGCCACACTACTTAAGCCACTGAAAAAAGGTGAGCATCATGGGCAAAAAGGCTTTTTTGCCTGGTTTAACCAGATGtt > 2:1305744/1‑100 (MQ=255) gatCCTCACTCCGGCTCTGTGTGCCACACTACTTAAGCCACTGAAAAAAGGTGAGCATCATGGGCAAAAAGGCTTTTTTGCCTGGTTTAACCAGATGttt > 1:2529261/1‑100 (MQ=255) atCCTCACTCCGGCTCTGTGTGCCACACTACTTAAGCCACTGAAAAAAGGTGAGCATCATGGGCAAAAAGGCTTTTTTGCCTGGTTTAACCAGATGTTTa > 2:3650160/1‑100 (MQ=255) atCCTCACTCCGGCTCTGTGTGCCACACTACTTAAGCCACTGAAAAAAGGTGAGCATCATGGACAAAAAGGCTTTTTTGCCTGGTTGAAACAGATGTTTa > 1:2275024/1‑100 (MQ=255) cTCACTCCGGCTCTGTGTGCCACACTACTTAAGCCACTGAAAAAAGGTGAGCATCATGGGCAAAAAGGCTTTTTTGCCTGGTTTAACCAGATGTTTAAcc > 1:1366787/1‑100 (MQ=255) tCACTCCGGCTCTGTGTGCCACACTACTTAAGCCACTGAAAAAAGGTGAGCATCATGGGCAAAAAGGCTTTTTTGCCTGGTTTAACCAGATGTTTAACCg < 2:3821727/100‑1 (MQ=255) cACTCCGGCTCTGTGTGCCACACTACTTAAGCCACTGAAAAAAGGTGAGCATCATGGACAAAAAGGCTTTTTTGCCTGGTTTAACAAGATGTTTAACCGc > 1:100731/1‑100 (MQ=255) cTCCGGCTCTGTGTGCCACACTACTTAAGCCACTGAAAAAAGGTGAGCATCATGGGCAAAAAGGCTTTTTTGCCTGGTTTAACCAGATGTTTAACCGCaa > 1:2449603/1‑100 (MQ=255) ccGGCTCTGTGTGCCACACTACTTAAGCCACAGAAAAAAGGTGAGCATCATGGGCAAAAAGGCTTTTTTGCCTGGTTTAACCAGATGTTTAACCGCAACg > 2:413278/1‑100 (MQ=255) gCTCTGTGTGCCACACTACTTAAGCCACTGAAAAAAGGTGAGCATCATGGGCAAAAAGGCTTTTTTGCCTGGTTTAACCAGATGTTTAACCGCAACGCCg < 2:3511594/100‑1 (MQ=255) ctGTGTGCCACACTACTTAAGCCACTGAAAAAAGGTGAGCATCATGGGCAAAAAGGCTTTTTTGCCTGGTTTAACCAGATGTTTAACCGCAACACCGaa > 1:653342/1‑99 (MQ=255) tggcacaCTACTTAAGGCACTGAAAAAATGTTATCATCATTTGCAAAAAGTCTGGTTTGCCTGGTTTAACCATATGTTTAACCGCAACGCCTAACGCTAc < 1:2739478/97‑1 (MQ=255) gCCACACTACTTAAGCCACTGAAAAAAGGTGAGCATCATGGGCAAAAAGGCTTTTTTGCCTGGTTTAACCAGATGTTTAACCGCAACGCCGAACGCTACg > 1:3266428/1‑100 (MQ=255) ccACACTACTTAAGCCACTGAAAAAAGGTGAGCATCATGGGCAAAAAGGCTTTTTTGCCTGGTTTAACCAGATGTTTAACCGCAACGCCGAACGCTACGa > 2:3817554/1‑100 (MQ=255) acacTACTTAAGCCACTGAAAAAAGGTGAGCATCATGGGCAAAAAGGCTTTTTTGCCTGGTTTAACCAGATGTTTAACCGCAACGCCGAACGCTACGaaa < 1:3018592/100‑1 (MQ=255) ctactTAAGCCACTGAAAAAAGGTGAGCATCATGGGCAAAAAGGCTTTTTTTTTTTTTTTTCTCAGATGTATAACCGCAACGCCGAACGCTACGaaaa > 2:212085/1‑98 (MQ=255) ctTAAGCCACTGAAAAAAGGTGAGCATCATGGGCAAAAAGGCTTTTTTGCCTGGTTTAACCAGATGTTTAACCGCAACGCCGAACGCTACGCAAAAgggg > 2:1036239/1‑100 (MQ=255) ctTAAGCCACTGAAAAAAGGTGAGCATCATGGGCAAAAAGGCTTTTTTGCCTGGTTTAACCAGATGTTTAACCGCAACGCCGAACGCTACGAAAAAgggg > 2:251151/1‑100 (MQ=255) ctTAAGCCACTGAAAAAAGGTGAGCATCATGGGCAAAAAGGCTTTTTTGCCTGGTTTAACCAGATGTTTAACCGCAACGCCGAACGCTACGAAAAAgggg < 2:2052475/100‑1 (MQ=255) ctTAAGCCACTGAAAAAAGGTGAGCATCATGGGCAAAAAGGCTTTTTTGCCTGGTTTAACCAGATGTTTAACCGCAACGCCGAACGCTACGAAAAAgggg > 2:876175/1‑100 (MQ=255) ctTAAGCCACTGAAAAAAGGTGAGCATCATGGGCAAAAAGGCTTTTTTGCCTGGTTTAACCAGATGTTTAACCGCAACGCCGAACGCTACGAAAAAgggg > 2:3254097/1‑100 (MQ=255) ctTAAGCCACTGAAAAAAGGTGAGCATCATGGGCAAAAAGGCTTTTTTGCCTGGTTTAACCAGATGTTTAACCGCAACGCCGAACGCTACGAAAAAggg > 1:2591766/1‑99 (MQ=255) ttAAGCCACTGAAAAAAGGTGAGCATCATGGGCAAAAAGGCTTTTTTGCCTGGTTTAACCAGATGTTTAACCGCAACGCCGAACGCTACGAAAAAGGGGt < 2:3888725/100‑1 (MQ=255) tAAGCCACTGAAAAAAGGTGAGCATCATGGGCAAAAAGGCTTTTTTGCCTGGTTTAACCAGATGTTTAACCGCAACGCCGAACGCTACGAAAAAGGGGTg > 1:2596769/1‑100 (MQ=255) tAAGCCACTGAAAAAAGGTGAGCATCATGGGCAAAAAGGCTTTTTTGCCTGGTTTAACCAGATGTTTAACCGCAACGCCGAACGCTACGAAAAAGGGGTg > 2:10270/1‑100 (MQ=255) aaGCCACTGAAAAAAGGTGAGCATCATGGGCAAAAAGGCTTTTTTGCCTGGTTTAACCAGATGTTTAACCGCAACGCCGAACGCTACGAAAAAGGGGTgg < 2:2527315/100‑1 (MQ=255) gCCACTGAAAAAAGGTGAGCATCATGGGCAAAAAGGCTTTTTTGCCTGGTTTAACCAGATGTTTAACCGCAACGCCGAACGCTACGAAAAAGGGGTGGCg > 1:1029073/1‑100 (MQ=255) gCCACTGAAAAAAGGTGAGCATCATGGGCAAAAAGGCTTTTTTGCCTGGTTTAACCAGATGTTTAACCGCAACGCCGAACGCTACGAAAAAGGGGTGGCg > 1:227735/1‑100 (MQ=255) gCCACTGAAAAAAGGTGAGCATAATGGGCAAAAAGGCTTTTTTGCCTGGTTTAACCAGATGTTTAACCGCAACGCCGAAGGATACGAAAAAGGGGTGGCg > 2:2916280/1‑100 (MQ=255) cACTGAAAAAAGGTGAGCATCATGGGCAAAAAGGCTTTTTTGCCTGGTTTAACCAGATGTTTAACCGCAACGCCGAACGCTACGAAAAAGGGGTGGCGaa > 1:2894000/1‑100 (MQ=255) cTGAAAAAAGGTGAGCATCATGGGCAAAAAGGCTTTTTTGCCTGGTTTAACCAGATGTTTAACCGCAACGCCGAACGCTACGAAAAAGGGGTGGCGaaaa < 2:2811704/100‑1 (MQ=255) cTGAAAAAAGGTGAGCATCATGGGCAAAAAGGCTTTTTTGCCTGGTTTAACCAGATGTTTAACCGCAACGCCGAACGCTACGAAAAAGGGGTGGCGaaaa > 1:494624/1‑100 (MQ=255) tGAAAAAAGGTGATTATCATGGTGTAAATGGTTTTTTTGCCTGGTTTAACCAGATGTTTAACCGCAACGCCGAACGCTACGAAAAAGGGGTGGCGaaaa < 1:3543988/99‑1 (MQ=255) tGAAAAAAGGTGAGCATAATAAGAAAAAAGGCTTTTTTGCCTGGTTTAACCAGATGTTTAACCGCAACGCCGAACGCTACGAAAAAGGGGTGGCGAAAAt < 2:1103533/100‑1 (MQ=255) gAAAAAAGGTGAGCATCATGGGCAAAAAGGCTTTTTTGCCTGGTTTAACCAGATGTTTAACCGCAACGCCGAACGCTACGAAAAGGGGGTGGCGAAAAtt > 2:543906/1‑100 (MQ=255) gAAAAAAGGTGAGCATCATGGGAAAAAAGGCTTTTTTGCATAGTTTAACCAAATGTTTAACAGAAACGACAAACACTAAGAAAAAAAGGTGGCGaaaa > 2:3599381/1‑98 (MQ=255) aaaaaaGGTGAGCATCATCGGGAAAAACGCCTTTTTGCCTGGTTTAACCATATGTTTATCCGCATTGAAAAAAAAAAAAAAAAAGGGGTGGCGAAAATtc < 2:165712/100‑1 (MQ=255) aaaaaGGTGAGCATCATGGGCAAAAAGGCTTTTTTGCCTGGTTTAACCAGATGTTTAACCGCAACGCCGAACGCTACGAAAAAGGGGTGGCGAAAATtct < 1:1829258/100‑1 (MQ=255) aaaGGTGAGCATCACGAGCAAAAAGGCTTTTTTGCCTGGTTTAACCAGATGTTTAACCGCAACGTAAAAAAAAAAAAAAAAGGGGTGGCGAAAATTCTcc < 2:1480667/100‑1 (MQ=255) caGGTGAGCATCATGGACAAAAAGGCTTTTTTGCCTGGTTTAACCAGCGGTTTAACCGCAACGCCGAACGCTACGAAAAATGTGTGGCGACAATtct > 2:3660698/2‑97 (MQ=255) ggTGAGCATCATGGGCAAAAAGGCTTTTTTGCCTGGTTTAACCAGATGTTTAACCGCAACGCCGAACGCTACGAAAAAGGGGTGGCGAAAATTCTCCAcc > 2:191724/1‑100 (MQ=255) tGAGCATCATGGGCAAAAAGGCTTTTTTGCCTGGTTTAACCAGATGTTTAACCGCAACGCCGAACGCTACGAAAAAGGGGTGGCGAAAATTCTCCACCGt > 2:584415/1‑100 (MQ=255) gCATCATGGGCAAAAAGGCTTTTTTGCCTGGTTTAACCAGATGTTTAACCGCAACGCCGAACGCTACGAAAAAGGGGTGGCGAAAATTCTCCACCGTAGc > 1:352144/1‑100 (MQ=255) atcatGGGCAAAAAGGCTTTTTTGCCTGGTTTAACCAGATGTTTAACCGCAACGCCGAACGCTACGAAAAAGGGGTGGCGAAAATTCTCCACCGTAGCCt > 1:2960774/1‑100 (MQ=255) tcatGGGCAAAAAGGCTTTTTTGCCTGGTTTAATCAGATGTTTAACCGCAACGCCGAACGCTACGAAAAAGGGGTGGCGAAAATTCTCCACCGTAGCCTg < 1:963356/100‑1 (MQ=255) aaccaggCAAAAAAGCCTTTTTGCCTGGTTTAACCAGATGTTTAACCGCAACGCCGAACGCTACGAAAAAGGGGTGGCGAAAATTCTCCACCGTAGCCTg > 2:2886158/6‑100 (MQ=255) accaggCAAAAAAGCCTTTTTGCCTGGTTTAACCAGATGTTTAACCGCAACGCCGAACGCTACGAAAAAGGGGTGGCGAAAATTCTCCACCGTAGCCTgc > 2:3233611/5‑100 (MQ=255) accaggCAAAAAAGCCTTTTTGCCTGGTTTAACCAGATGTTTAACCGCAACGCCGAACGCTACGAAAAAGGGGTGGCGAAAATTCTCCACCGTAGCCTgc > 2:833999/5‑100 (MQ=255) ccaggCAAAAAAGCCTTTTTGCCTGGTTTAACCAGATGTTTAACCGCAACGCCGAACGCTACGAAAAAGAGGTGGCGAAAATTCTCCACCGTAGCCTgcg > 1:2861821/4‑100 (MQ=255) tGGGCAAAAAGGCTTTTTTGACTGGTTTAACCAGATGTTTAACCGCAACGCCGAACGCTACGAAAAAGGGGTGGCGAAAATTCTCCACCGTAGCCTgcgc < 1:679112/100‑1 (MQ=255) caggCAAAAAAGCCTTTTTGTTTTTTTTTAACAGATGTTTAACCGCAACGTCGAACGCTATGAAAAAGGTGTTGCGAAAATTCTTCACCATAGCCt > 2:2273319/3‑96 (MQ=255) caggCAAAAAAGCCTTTTTGCCTGGTTTAACCAGATGTTTAACCGCAACGCCGAACGCTACGAAAAAGGGGCAGAGAAAATGCTCAACCGTAGCCTgcgc > 2:2484411/3‑100 (MQ=255) caggCAAAAAAGCCTTTTTGCCTGCTTTAACCAGATGTTTAACCGCAACGCCGAACGCTCCGAAAAAGGGCGGGCGAAAATTCTCCACCGTAGCCTgc > 2:1506267/3‑98 (MQ=255) gggCAAAAAGGCTTTTTTGCCTGGTTTAACCAGATGTTTAACCGCAACGCCGAACGCTACGAAAAAGGGGTGGCGAAAATTCTCCACCGTAGCCTGCGCt < 2:3443979/100‑1 (MQ=255) gggCAAAAAGGCTTTTTTGCCTGGTTTAACCAGATGTTTAACCGCAACGCCGAACGCTACGAAAAAGGGGTGGCGAAAATTCTCCACCGTAGCCTGCGCt > 1:3562125/1‑100 (MQ=255) gggCAAAAAGGCTTTTTTGCCTGGTTTAACCAGATGTTTAACCGCAACGCCGAACGCTACGAAAAAGGGGTGGCGAAAATTCTCCACCGTAGCCTGCGCt < 1:3203512/100‑1 (MQ=255) aggCAAAAAAGCCTTTTTGCCTGGTTTAACCAGATGTTTAACCGCAACGCCGAACGCTACGAAAAAGGGGTGGCGAAAATTCTCCACCGTAGCCTGCGCt > 2:2198489/2‑100 (MQ=255) aggCAAAAAAGCCTTTTTGCCTGGTTTAACCAGATGTTTAACCGCAACGCCGAACGCTACGAAAAAGGGGTGGCGAAAATTCTCCACCGTAGCCTGCGCt > 1:2291042/2‑100 (MQ=255) aggCAAAAAAGCCTTTTTGCCTGGTTTAACCAGATGTTTAACCGCAACGCCGAACGCTACGAAAAAGGGGTGGCGAAAATTCTCCACCGTAGCCTGCGCt > 1:1178419/2‑100 (MQ=255) ggCAAAAAGGCTTTTTTGCCTTGTTTAACCAAATGTTTAACCGCAATGCCGTATGCTACGAAAAAGTGGTGGCGAAAATTCTCTACTGTAGTCttcact > 2:634226/1‑94 (MQ=255) cAAAAAGGCTTTTTTGCCTGGTTTAACCAGATGTTTAACCGCAACGCCGAACGCTACGAAAAAGGGGTGGCGAAAATTCTCCACCGTAGCCTGCGCTGGa < 2:3927633/100‑1 (MQ=255) aGGCTTTTTTGCCTGGTTTAACCAGATGTTTAACCGCAACGCCGAACGCTACGAAAAAGGGGTGGCGAAAATTCTCCACCGTAGCCTGCGCTGGATtgtg < 2:2311214/100‑1 (MQ=255) aGGCTTTTTTGCCTGGTTTAACCAGATGTTTAACCGCAACGCCGAACGCTACGAAAAAGGGGTGGCGAAAATTCTCCACCGTAGCCTGCGCTGGATtgtg < 1:10270/100‑1 (MQ=255) aGGCTTTTTTGCCTGGTTTAACAAGATGTTTAACCGCAACGCCGAACGCTACGAAAAAGGGGTGGCGAAAATTCTCCACCGTAGCCTGCGCTGGATtgtg > 2:824357/1‑100 (MQ=255) ggCTTTTTTGCCTGGTTTAACCAGATGTTTAACCGCAACGCCGAACGCTACGAAAAAGGGGTGGCGAAAATTCTCAACCGTAGCCTGCGCTGGATTGTGa > 1:1910890/1‑100 (MQ=255) ggCTTTTTTGCCTGGTTTAACCAGATGTTTAACCGCAACGCCGAACGCTACGAAAAAGGGATGGCGAAAATTCTCAACCGTAACCTGCGCTGGATTGTGa > 1:1861741/1‑100 (MQ=255) ggCTTTTTTGCCTGGTTTAAACAGATGTTTAACCGCAACGCCGAACGCTACGAAAAAGGGGTGGCGAAAATTCTCCCCCGTAGCCTGCGCTGGATtgtg < 2:2534863/99‑1 (MQ=255) ttttttGCCTGGTTTAACCAGATGTTTAACCGCAACGCCGAACGCTACGAAAAAGGGGTGGCGAAAATTCTCCACCGTAGCCTGCGCTGGATTGTGAttt < 1:836908/100‑1 (MQ=255) ttttttGCCTGGTTTAACCAGATGTTTAACCGCAACGCCGAACGCTACGAAAAAGGGGTGGCGAAAATTCTCCACCGTAGCCTGCGCTGGATTGTGAttn < 1:1733048/100‑2 (MQ=255) | TGGTGCTGTCAGTACTGGTAGCGATGATCCTCACTCCGGCTCTGTGTGCCACACTACTTAAGCCACTGAAAAAAGGTGAGCATCATGGGCAAAAAGGCTTTTTTGCCTGGTTTAACCAGATGTTTAACCGCAACGCCGAACGCTACGAAAAAGGGGTGGCGAAAATTCTCCACCGTAGCCTGCGCTGGATTGTGATTT > NC_000913/2589027‑2589224 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |