Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,459,293 (G)5→6 coding (955/1482 nt) gspE → general secretory pathway component, cryptic

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,459,2881.G96.9% 335.5 / 2.9 97coding (950/1482 nt)gspEgeneral secretory pathway component, cryptic
Reads supporting (aligned to +/- strand):  ref base . (2/1);  new base G (28/65);  total (30/67)
Fisher's exact test for biased strand distribution p-value = 2.29e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01

Only 100 of 118 total aligned reads displayed.

TGGAAGGCATTGGGCAAACGCAGGTGAATACCCGTGTGGATATGTCTTTCGCTCGCGGCCTGCGCGCCATACTTCGCCAGGACCCGGATGTCGTCATGGTGGGGGAAATTCGTGATACAGAAACCGCGCAGATTGCGGTTCAGGCCTCGCTCACCGGCCATCTGGTACTCTCAACACTCCACACTAACAGTG  >  NC_000913/3459189‑3459380
                                                                                                     |                                                                                            
tGGAAGGCATTGGGCAAACGCAGGTGAATACCCGTGTGGATATGTCTTTCGCTCGCGGCCTGCGCGCCATACTTCGCCAGGACCCGGATGTCGTCAtggt                                                                                               <  1:196449/100‑1 (MQ=255)
 ggAAGGCATTGGGCAAACGCAGGTGAATACCCGTGTGGATATGTCTTTCGCTCGCGGCCTGCGCGCCATACTTCGCCAGGACCCGGATGTCGTCAtggtg                                                                                             >  2:1093745/1‑100 (MQ=255)
  gAAGGCATTGGGCAAACGCAGGTGAATACCCGTGTGGATATGTCTTTCGCTCGCGGCCTGCGCGCCATACTTCGCCAGGACCCGGATGTCGTCAtggtgg                                                                                            >  1:390708/1‑100 (MQ=255)
   aaGGCATTGGGCAAACGCAGGTGAATACCCGTGTGGATATGTCTTTCGCTCGCGGCCTGCGCGCCATACTTCGCCAGGACCCGGATGTCGTCATGGTggg                                                                                           <  2:123577/100‑1 (MQ=255)
   aaGGCATTGGGCAAACGCAGGTGAATACCCGTGTGGATATGTCTTTCGCTCGCGGCCTGCGCGCCATACTTCGCCAGGACCCGGATGTCGTCATGGTggg                                                                                           >  2:72991/1‑100 (MQ=255)
   aaGGCATTGGGCAAACGCAGGTGAATACCCGTGTGGATATGTCTTTCGCTCGCGGCCTGCGCGCCATACTTCGCCAGGACCCGGATGTCGTCATGGTggg                                                                                           <  2:1670836/100‑1 (MQ=255)
   aaGGCATTGGGCAAACGCAGGTCAATACCCGTGTGGATATGTCTTTCGCTCGCGGCCGGCGCGCCATACTTCGCCAGGACCCGGATGTCGTCATGGTggg                                                                                           <  2:2849894/100‑1 (MQ=255)
     ggCATTGGGCAAACGCAGGTGAATACCCGTGTGGATATGTCTTTCGCTCGCGGCCTGCGCGCCATACTTCGCCAGGACCCGGATGTCGTCATGGTggggg                                                                                         <  2:611762/100‑1 (MQ=255)
     gacATTGGGCAAACGCAGGCGAATACCCGCGTGGATATGTCGTTCGCTCGCGGCCTGCGCGCCATACTTCGCCAGGACCCGGATGTCGTCATGGTggggg                                                                                         <  2:1835188/98‑1 (MQ=255)
      gCATTGGGCAAACGCAGGTGAATACCCGTGTGGATATGTCTTTCGCTCGCGGCCTGCGCGCCATACTTCGCCAGGACCCGGATGTCGTCATGGTgggggg                                                                                        <  1:814404/100‑2 (MQ=255)
      gCATTGGGCAAACGCAGGTGAATACCCGTGTGGATATGTCTTTCGCTCGCGGCCTGCGCGCCATACTTCGCCAGGACCCGGATGTCGTCATGGTgggggg                                                                                        <  1:2666912/100‑2 (MQ=255)
       cATTGGGCAAACGCAGGTGAATACCCGTGTGGATATGTCTTTCGCTCGCGGCCTGCGCGCCATACTTCGCCAGGACCCGGATGTCGTCATGGTgggggga                                                                                       >  2:2126101/1‑98 (MQ=255)
        aTTGGGCAAACGCAGGTGAATACCCGTGTGGATATGTCTTTCGCTCGCGGCCTGCGCGCCATACTTCGCCAGGACCCGGATGTCGTCATGGTGGGGGgaa                                                                                      >  2:2498459/1‑100 (MQ=255)
         ttGGGCAAACGCAGGTGAATACCCGTGTGGATATGTCTTTCGCTCGCGGCCTGCGCGCCATACTTCGCCAGGACCCGGATGTCGTCATGGTggggggaaa                                                                                     >  1:1364210/1‑96 (MQ=255)
          tGGGCAAACGCAGGTGAATACCCGTGTGGATATGTCTTTCGCTCGCGGCCTGCGCGCCATACTTCGCCAGGACCCGGATGTCGTCATGGTggggggaaat                                                                                    >  2:2312120/1‑95 (MQ=255)
          tGGGCAAACGCAGGTGAATACCCGTGTGGATATGTCTTTCGCTCGCGGCCTGCGCGCCATACTTCGCCAGGACCCGGATGTCGTCATGGTggggggaaat                                                                                    >  1:1445908/1‑95 (MQ=255)
           gggCAAACGCAGGTGAATACCCGTGTGGATATGTCTTTCGCTCGCGGCCTGCGCGCCATACTTCGCCAGGACCCGGATGTCGTCAtggtgaagtatggcg                                                                                   <  1:1757765/100‑11 (MQ=255)
           gggCAAACGCAGGTGAATACCCGTGTGGATATGTCTTTCGCTCGCGGCCTGCGCGCCATACTTCGCCAGGACCCGGATGTCGTCATGGTggggggcaatt                                                                                   >  2:2905375/1‑94 (MQ=255)
           gggCAAACGCAGGTAAATACCCGTGTGGATATGTCTTTCGCTCGCGGCCTGCGCGCCATACTTCGCCAGGACCCGGATGTCGTCATAGTGGGGGGAAAtt                                                                                    <  1:2920358/100‑1 (MQ=255)
             gCAAACGCAGGTGAATACCCGTGTGGATATGTCTTTCGCTCGCGGCCTGCGCGCCATACTTCGCCAGGACCCGGATGTCGTCATGGTGGGGGGAAATTCg                                                                                  <  2:61426/100‑1 (MQ=255)
             gCAAACGCAGGTGAATACCCGTGTGGATATGTCTTTCGCTCGCGGCCTGCGCGCCATACTTCGCCAGGACCCGGATGTCGTCATGGTGGGGGGAAATTCg                                                                                  <  2:1551060/100‑1 (MQ=255)
              cAAACGCAGGTGAATACCCGTGTGGATATGTCTTTCGCTCGCGGCCTGCGCGCCATACTTCGCCAGGACCCGGATGTCGTCATGGTGGGGGGAAATTCGt                                                                                 <  2:1160116/100‑1 (MQ=255)
              cAAACGCAGGTGAATACCCGTGTGGATATGTCTTTCGCTCGCGGCCTGCGCGCCATACTTCGCCAGGACCCGGATGTCGTCATGGTGGGGGGAAATTCGt                                                                                 <  1:7714/100‑1 (MQ=255)
              cAAACGCAGGTGAATACCCGTGTGGATATGTCTTTCGCTCGCGGCCTGCGCGCCATACTTCGCCAGGACCCGGATGTCGTCATGGTGGGGGGAAATTCGt                                                                                 >  1:352753/1‑100 (MQ=255)
               aaaCGCAGGTGAATACCCGTGTGGATATGTCTTTCGCTCGCGGCCTGCGCGCCATACTTCGCCAGGACCCGGATGTCGTCATGGTGGGGGGAAATTCGTg                                                                                <  1:286818/100‑1 (MQ=255)
               aaaCGCAGGTGAATACCCGTGTGGATATGTCTTTCGCTCGCGGCCTGCGCGCCATACTTCGCCAGGACCCGGATGTCGTCATGGTGGGGGGAAATTCGTg                                                                                <  1:2979829/100‑1 (MQ=255)
               aaaCGCAGGTGAATACCCGTGTGGATATGTCTTTCGCTCGCGGCCTGCGCGCCATACTTCGCCAGGACCCGGATGTCGTCATGGTGGGGGGAAATTCGTg                                                                                <  1:1320199/100‑1 (MQ=255)
               aaaCGCAGGTGAATACCCGTGTGGATATGTCTTTCGCTCGCGGCCTGCGCGCCATACTTCGCCAGGACCCGGATGTCGTCATGGTGGGGGGAAATTCGTg                                                                                <  1:1524406/100‑1 (MQ=255)
               aaaCGCAGGGGAATACCCGTGTGGATATGTCTTTCGCTCGCGGCCTGCGCGCCATACTTCGCCAGGACCCGGATGTCGTCATGGTGGGGGGAAATTCGTg                                                                                <  1:2031595/100‑1 (MQ=255)
                aaCGCAGGTGAATACCCGTGTGGATATGTCTTTCGCTCGCGGCCTGCGCGCCATACTTCGCCAGGACCCGGATGTCGTCATGGTGGGGGGAAATTCGTGa                                                                               <  2:2247997/100‑1 (MQ=255)
                 aCGGAGGTGAATACCCGTGTGGATATGTCTTTCGCTCGCGGCCTGCGCGCCATACTTCGCCAGGACCCGGATGTCGTCATGGTGGGGGGAAATTCGTGAt                                                                              <  1:224946/100‑1 (MQ=255)
                 aCGCAGGTGAATACCCGTGTGGATATGTCTTTCGCTCGCGGCCTGCGCGCCATACTTCGCCAGGACCCGGATGTCGTCATGGTGGGGGGAAATTCGTGAt                                                                              <  1:2931054/100‑1 (MQ=255)
                 aCGCAGGTGAATACCCGTGTGGATATGTCTTTCGCTCGCGGCCTGCGCGCCATACTTCGCCAGGACCCGGATGTCGTCATGGTGGGGGGAAATTCGTGAt                                                                              <  1:1130066/100‑1 (MQ=255)
                 aCGCAGGTGAATACCCGTGTGGATATGTCTTTCGCTCGCGGCCTGCGCGCCATACTTCGCCAGGACCCGGATGTCGTCATGGTGGGGGGAAATTCGTGAt                                                                              <  1:1732718/100‑1 (MQ=255)
                 aCGCAGGTGAATACCCGTGTGGATATGTCTTTCGCTCGCGGCCTGCGCGCCATACTTCGCCAGGACCCGGATGTCGTCATGGTGGGGGGAAATTCGTGAt                                                                              >  1:2742909/1‑100 (MQ=255)
                  cGCAGGTGAATACCCGTGTGGATATGTCTTTCGCTCGCGGCCTGCGCGCCATACTTCGCCAGGACCCGGATGTCGTCATGGTGGGGGGAAATTCGTGATa                                                                             >  2:462988/1‑100 (MQ=255)
                   gCAGGTGAATACCCGTGTGGATATGTCTTTCGCTCGCGGCCTGCGCGCCATACTTCGCCAGGACCCGGATGTCGTCATGGTGGGGGGAAATTCGTGATAc                                                                            <  2:1871653/100‑1 (MQ=255)
                     aGGTGAATACCCGTGTGGATATGTCTTTCGCTCGCGGCCTGCGCGCCATACTTCGCCAGGACCCGGATGTCGTCATGGTGGGGGGAAATTCGTGATACAg                                                                          <  2:124855/100‑1 (MQ=255)
                       gTGGATTCCCGTTTTGATGTGGCTTTCGCTCGCGTCCTGCGCGCCATACTTCGCCAGGACCCGTATGTCGTCATGGTGGGGGGAAATTCGTGAt                                                                              <  2:2910509/94‑1 (MQ=255)
                         gAATACCCGTGTGGATATGTCTTTCGCTCGCGGCCTGCGCGCCATACTTCGCCAGGACCCGGATGTCGTCATGGTGGGGGGAAATTCGTGATACAGAAAc                                                                      <  2:500722/100‑1 (MQ=255)
                         gAATACCCGTGTGGATATGTCTTTCGCTCGCGGCCTGCGCGCCATACTTCGCCAGGACCCGGATGTCGTCATGGTGGGGGGAAATTCGTGATACAGAAAc                                                                      >  1:1946930/1‑100 (MQ=255)
                           aTACCCGTGTGGATATGTCTTTCGCTCGCGGCCTGCGCGCCATACTTCGCCAGGACCCGGATGTCGTCATGGTGGGGGGAAATTCGTGATACAGAAACcg                                                                    >  2:2258577/1‑100 (MQ=255)
                            tACCCGTGTGGATATGTCTTTCGCTCGCGGCCTGCGCGCCATACTTCGCCAGGACCCGGATGTCGTCATGGTGGGGGGAAATTCGTGATACAGAAACcgc                                                                   >  2:2905314/1‑100 (MQ=255)
                              cccGTGTGGATATGTCTTTCGCTCGCGGCCTGCGCGCCATACTTCGCCAGGACCCGGATGTCGTCATGGTGGGGGGAAATTCGTGATACAGAAACCgcgc                                                                 >  2:891817/1‑100 (MQ=255)
                              cccGTGTGGATATGTCTTTCGCTCGCGGCCTGCGCGCCATACTTCGCCAGGACCCGGATGTCGTCATGGTGGGGGGAAATTCGTGATACAGAAACCgcgc                                                                 <  2:1764143/100‑1 (MQ=255)
                               ccGTGTGGATATGTCTTTCGCTCGCGGCCTGCGCGCCATACTTCGCCAGGACCCGGATGTCGTCATGGTGGGGGGAAATTCGTGATACAGAAACCGCGCa                                                                <  1:535666/100‑1 (MQ=255)
                               ccGTGTGGATATGTCTTTCGCTCGCGGCCTGCGCGCCATACTTCGCCAGGACCCGGATGTCGTCATGGTGGGGGGAAATTCGTGATACAGAAACCGCGCa                                                                <  1:387218/100‑1 (MQ=255)
                               ccGTGTGGATATGTCTTTCGCTCGCGGCCTGCGCGCCATACTTCGCCAGGACCCGGATGTCGTCATGGTGGGGGGAAATTCGTGATACAGAAACCGCGCa                                                                <  2:2385603/100‑1 (MQ=255)
                                cGTGTGGATATGTCTTTCGCTCGCGGCCTGCGCGCCATACTTCGCCAGGACCCGGATGTCGTCATGGTGGGGGGAAATTCGTGATACAGAAACCGCGCAg                                                               <  1:1093755/100‑1 (MQ=255)
                                cGTGTGGATATGTCTTTCGCTCGCGGCCTGCGCGCCATACTTCGCCAGGACCCGGATGTCGTCATGGTGGGGGGAAATTCGTGATACAGAAACCGCGCAg                                                               <  1:1054385/100‑1 (MQ=255)
                                     ggATATGTCTTTCGCTCGCGGCCTGCGCGCCATACTTCGCCAGGACCCGGCTGTCGTCATGGTGGGGGGAAATTCGTGATACAGAAACCGCGCAGATTGc                                                          >  1:1778953/1‑100 (MQ=255)
                                     ggATATGTCTTTCGCTCGCGGCCTGCGCGCCATACTTCGCCAGGACCCGGATGTCGTCATGGTGGGGGGAAATTCGTGATACAGAAACCGCGCAGATTGc                                                          <  2:1466071/100‑1 (MQ=255)
                                     ggATATGTCTTTCGCTCGCGGCCTGCGCGCCATACTTCGCCAGGACCCGGATGTCGTCATGGTGGGGGGAAATTCGTGATACAGAAACCGCGCAGATTGc                                                          <  1:106604/100‑1 (MQ=255)
                                     ggATATGTCTTTCGCTCGCGGCCTGCGCGCCATACTTCGCCAGGACCCGGATGTCGTCATGGTGGGGGGAAATTCGTGATACAGAAACCGCGCAGATTGc                                                          >  1:1281424/1‑100 (MQ=255)
                                       atatGTCTTTCGCTCGCGGCCTGCGCGCCATACTTCGCCAGGACCCGGATGTCGTCATGGTGGGGGGAAATTCGTGATACAGAAACCGCGCAGATTGCgg                                                        <  1:737863/100‑1 (MQ=255)
                                       atatGTCTTTCGCTCGCGGCCTGCGCGCCATACTTCGCCAGGACCCGGATGTCGTCATGGTGGGGGGAAATTCGTGATACAGAAACCGCGCAGATTGCgg                                                        <  1:1269089/100‑1 (MQ=255)
                                       atatGTCTTTCGCTCGCGGCCTGCGCGCCATACTTCGCCAGGACCCGGATGTCGTCATGGTGGGGGGAAATTCGTGATACAGAAACCGCGCAGATTGCgg                                                        <  1:72991/100‑1 (MQ=255)
                                       atatGTCTTTCGCTCGCGGCCTGCGCGCCATACTTCGCCAGGACCCGGATGTCGTCATGGTGGGGGGAAATTCGTGATACAGAAACCGCGCAGATTGCgg                                                        <  2:148963/100‑1 (MQ=255)
                                        tatGTCTTTCGCTCGCGGCCTGCGCGCCATACTTCGCCAGGACCCGGATGTCGTCATGGTGGGGGGAACTTCGTGATACAGAAACCGCGCAGATCGCgg                                                        >  1:1348167/1‑99 (MQ=255)
                                         atGTCTTTCGCTCGCGGCCTGCGCGCCAGACTTAGCCAGGACCCGGATGTCGTCATGGTGGGGGGAAATTCGTGATACAGAAACCGCGCAGATTGCGGtt                                                      <  2:546580/100‑1 (MQ=255)
                                               ttCGCTCGCGGCCTGCGCGCCATACTTCGCCAGGACCCGTATGTCGTCATGGTGGGGGGAAATTCGTGATACAGAAACCGCGCAGATTGCGGTTCAGGcc                                                <  1:2586286/100‑1 (MQ=255)
                                               ttCGCTCGCGGCCTGCGCGCCATACTTCGCCAGGACCCGGATGTCGTCATGGTGGGGGGAAATTCGTGATACAGAAACCGCGCAGATTGCGGTTCAGGcc                                                >  2:608117/1‑100 (MQ=255)
                                                tcgctcgcGGCCTGCGCGCCATACTTCGCCAGGACCCGGATGTCGTCATGGTGGGGGGAAATTCGTGATACAGAAACCGCGCAGATTGCGGTTCAGGCCt                                               <  1:2059697/100‑1 (MQ=255)
                                                tcgctcgcGGCCTGCGCGCCATACTTCGCCAGGACCCGGATGTCGTCATGGTGGGGGGAAATTCGTGATACAGAAACCGCGCAGATTGCGGTTCAGGCCt                                               >  2:703971/1‑100 (MQ=255)
                                                  gctcgcGGCCTGCGCGCCATACTTCGCCAGGACCCGGATGTCGTCATGGTGGGGGGAAATTCGTGATACAGAAACCGCGCAGATTGCGGTTCAGGCCTCg                                             <  1:2717895/100‑1 (MQ=255)
                                                   ctcgcGGCCTGCGCGCCATACTTCGCCAGGACCCGGATGTCGTCATGGTGGGGGGAAATTCGTGATACAGAAACCGCGCAGATTGCGGTTCAGGCCTCGc                                            >  1:1357681/1‑100 (MQ=255)
                                                     cgcgGCCTGCGCGCCATACTTCGCCAGGACCCGGATGTCGTCATGGTGGGGGGAAATTCGTGATACAGAAACCGCGCAGATTGCGGTTCAGGCCTCGCTc                                          <  2:1705558/100‑1 (MQ=255)
                                                          ccTGCGCGCCATACTTCGCCAGGACCCGGATGTCGTCATGGTGGGGGGAAATTCGTGATACAGAAACCGCGCAGATTGCGGTTCAGGCCTCGCTCACCgg                                     <  1:2905344/100‑1 (MQ=255)
                                                          ccTGCGCGCCATACTTCGCCAGGACCCGGATGTCGTCATGGTGGGGGGAAATTCGTGATACAGAAACCGCGCAGATTGCGGTTCAGGCCTCGCTCACCgg                                     <  1:1396279/100‑1 (MQ=255)
                                                             gcgcgcCATACTTCGCCAGGACCCGGATGTCGTCATGGTGGGGGGAAATTCGTGATACAGAAACCGCGCAGATTGCGGTTCAGGCCTCGCTCACCGGCCa                                  >  2:1173764/1‑100 (MQ=255)
                                                              cgcgcCATACTTCGCCAGGACCCGGATGTCGTCATGGTGGGGGGAAATTCGTGATACAGAAACCGCGCAGATTGCGGTTCAGGCCTCGCTCACCGGCCAt                                 >  1:2100366/1‑100 (MQ=255)
                                                               gcgcCATACTTCGCCAGGACCCGGATGTCGTCATGGTGGGGGGAAATTCGTGATACAGAAACCGCGCAGATTGCGGTTCAGGCCTCGCTCACCGGCCATc                                <  2:494470/100‑1 (MQ=255)
                                                                 gcCATACTTCGCCAGGACCCGGATGTCGTCATGGTGGGGGGAAATTCGTGATACAGAAACCGCGCAGATTGCGGTTCAGGCCTCGCTCACCGGCCATCTg                              <  1:145214/100‑1 (MQ=255)
                                                                  ccATACTTCGCCAGGACCCGGATGTCGTCATGGTGGGGGGAAATTCGTGATACAGAAACCGCGCAGATTGCGGTTCAGGCCTCGCTCACCGGCCATCTgg                             >  2:2412595/1‑100 (MQ=255)
                                                                     tACTTCGCCAGGACCCGGATGTCGTCATGGTGGGGGGAAATTCGTGATACAGAAACCGCGCAGATTGCGGTTCAGGCCTCGCTCACCGGCCATCTGGTAc                          <  2:2365742/100‑1 (MQ=255)
                                                                     tACTTCGCCAGGACCCGGATGTCGTCATGGTGGGGGGAAATTCGTGATACAGAAACCGCGCAGATTGCGGTTCAGGCCTCGCTCACCGGCCATCTGGTAc                          <  1:1965152/100‑1 (MQ=255)
                                                                       cTTCGCCAGGACCCGGATGTCGTCATGGCGGGGGGAAATTCGTGATACAGAAACCGCGCAGATTGCGGTTCAGGCCTCGCTCACCGGCCATCTGGTActc                        >  2:50115/1‑100 (MQ=255)
                                                                       cTTCGCCAGGACCCGGATGTCGTCATGGTGGGGGGAAATTCGTGATACAGAAACCGCGCAGATTGCGGTTCAGGCCTCGCTCACCGGCCATCTGGTActc                        >  1:1775638/1‑100 (MQ=255)
                                                                          cGCCAGGACCCGGATGTCGTCATGGTGGGGGGAAATTCGTGATACAGAAACCGCGCAGATTGCTGTTCAGGCCTCGCTCACCGGCCATCTGGTACTCTCa                     <  2:581326/100‑1 (MQ=255)
                                                                           gCCAGGACCCGGATGTCGTCATGGTGGGGGGAAATTCGTGATACAGAAACCGCGCAGATTGCGGTTCAGGCCTCGCTCACCGGCCATCTGGTACTCTCaa                    >  1:3090512/1‑100 (MQ=255)
                                                                            ccAGGACCCGGATGTCGTCATGGTGGGGGGAAATTCGTGATACAGAAACCGCGCAGATTGCGGTTCAGGCCTCGCTCACCGGCCATCTGGTACTCTCAac                   <  1:2312143/100‑1 (MQ=255)
                                                                            ccAGGACCCGGATGTCGTCATGGTGGGGGGAAATTCGTCATACATAAACCGCGCATATTGCGGTTCAGGCCTCGCTCACCGGCCATCTGGTACTCTCAac                   <  2:2510365/100‑1 (MQ=255)
                                                                                gACCCGGATGTCGTCATGGTGGGGGGAAATTCGTGATACAGAAACCGCGCAGATTGCGGTTCAGGCCTCGCTCACCGGCCATCTGGTACTCTCAACACTc               <  2:856532/100‑1 (MQ=255)
                                                                                gACCCGGATGTCGTCATGGTGGGGGGAAATTCGTGATACAGAAACCGCGCAGATTGCGGTTCAGGCCTCGCTCACCGGCCATCTGGTACTCTCAACACTc               <  1:324409/100‑1 (MQ=255)
                                                                                gACCCGGATGTCGTCATGGTGGGGGGAAATTCGTGATACAGAAACCGCGCAGATTGCGGTTCAGGCCTCGCTCACCGGCCATCTGGTACTCTCAACACTc               <  2:1289636/100‑1 (MQ=255)
                                                                                 aCCCGGATGTCGTCATGGTGGGGGGAAATTCGTGATACAGAAACCGCGCAGATTGCGGTTCAGGCCTCGCTCACCGGCCATCTGGTACTCTCAACACTcc              <  2:2971940/100‑1 (MQ=255)
                                                                                 aCCCGGATGTCGTCATGGTGGGGGGAAATTCGTGATACAGAAACCGCGCAGATTGCGGTTCAGGCCTCGCTCACCGGCCATCTGGTACTCTCAACACTcc              <  2:1423666/100‑1 (MQ=255)
                                                                                 aCCCGGATGTCGTCATGGTGGGGGGAAATTCGTGATACAGAAACCGCGCAGATTGCGGTTCAGGCCTCGCTCACCGGCCATCTGGTACTCTCAACACTcc              <  2:1364198/100‑1 (MQ=255)
                                                                                  ccgttaTGTCGTCATGGTCGGGGGAAATTCGTTTTACAGAAACCGCGCAGATTGCGGTTCAGGCCTCGCTCACCTGCCATCTGGTACTCGCAac                   <  2:894516/89‑1 (MQ=255)
                                                                                  cccGGATGTCGTCATGGTGGGGGGAAATTCGTGATACAGAAACCGCGCAGATTGCGGTTCAGGCCTCGCTCACCGGCCATCTGGTACTCTCAACACTCca             >  1:1370518/1‑100 (MQ=255)
                                                                                  cccGGATGTCGTCATGGTGGGGGGAAATTCGTGATACAGAAACCGCGCAGATTGCGGTTCAGGCCTCGCTCACCGACCATCTGGTACTCTCAACACTCca             >  1:1521362/1‑100 (MQ=255)
                                                                                   ccGGATGTCGTCATGGTGGGGGGAAATTCGTGATACAGAAACCGCGCAGATTGCGGTTCAGGCCTCGCTCACCGGCCATCTGGTACTCTCAACACTCcac            <  2:390706/100‑1 (MQ=255)
                                                                                   ccGGATGTCGTCATGGTGGGGGGAAATTCGTGATACAGAAACCGCGCAGATTGCGGTTCAGGCCTCGCTCACCGGCCATCTGGTACTCTCAACACTCcac            <  2:327402/100‑1 (MQ=255)
                                                                                   ccGGATGTCGTCATGGTGGGGGGAAATTCGTGATACAGAAACCGCGCAGATTGCGGTTCAGGCCTCGCTCACCGGCCATCTGGTACTCTCAACACTCcac            <  1:2126124/100‑1 (MQ=255)
                                                                                   ccGGATGTCGTCATGGTGGGGGGAAATTCGTGATACAGAAACCGCGCAGATTGCGGTTCAGGCCTCGCTCACCGGCCATCTGGTACTCTCAACACTCca             <  2:1384901/99‑1 (MQ=255)
                                                                                     ggAGGTCGTCATGGTGGGGGGAAATTCGTGATACAGAAACCGCGCAGATTGCGGTTCAGGCCGCGCTCACCGGCCATCTGGTACTCTCAACACTcc              <  2:226156/96‑1 (MQ=255)
                                                                                        tGTCGTCATGGTGGGGGGAAATTCGTGATACAGAAACCGCGCAGATTGCGGTTCAGGCCTCGCTCACCGGCCATCTGGTACTCTCAACACTCCACACTaa       <  1:2826883/100‑1 (MQ=255)
                                                                                         gtcgtcATGGTGGGGGGAAATTCGTGATACAGAAACCGCGCAGATTGCGGTTCAGGCCTCGCTCACCGGCCATCTGGTACTCTCAACACTCCACACTAAc      <  1:703974/100‑1 (MQ=255)
                                                                                             tccgatctggGGGAAATTCGTGATACAGAAACCGCGCAGATTGCGGTTCAGGCCTCGCTCACCGGCCATCTGGTACTCTCAACACTCCACACTAACAGTg  <  2:781593/93‑1 (MQ=255)
                                                                                             tcATGGTGGGGGGAAACTCGTGATACAGAAACCGCGCAGATTCCGGTCCAGGCCTCGCTCACCGGCCATCTGGTACTCTCAACACTCCACACTAACAGTg  <  2:2163202/100‑1 (MQ=255)
                                                                                                     |                                                                                            
TGGAAGGCATTGGGCAAACGCAGGTGAATACCCGTGTGGATATGTCTTTCGCTCGCGGCCTGCGCGCCATACTTCGCCAGGACCCGGATGTCGTCATGGTGGGGGAAATTCGTGATACAGAAACCGCGCAGATTGCGGTTCAGGCCTCGCTCACCGGCCATCTGGTACTCTCAACACTCCACACTAACAGTG  >  NC_000913/3459189‑3459380

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: