Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,666,4680AT21.4% 213.7 / 53.2 99Q385L (CAG→CTG) clcBH(+)/Cl(‑) exchange transporter
Reads supporting (aligned to +/- strand):  ref base A (39/38);  new base T (11/10);  total (51/48)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 104 total aligned reads displayed.

TTTTACTCGGATTGACCGGGATGGCGACACTGTTGGCGGCGACCACGCACGCGCCGATTATGTCGACGTTGATGATATGTGAAATGACCGGGGAGTATCAGCTACTCCCCGGTTTATTGATTGCCTGCGTAATTGCGTCGGTAATTTCGCGGACGTTACACCGTGACTCTATCTACCGCCAGCACACTGCGCAGCATAG  >  NC_000913/1666369‑1666567
                                                                                                   |                                                                                                   
     cTCGGATTGACCGGGATGGCGACACTGTTGGCGGCGACCACGCACGCGCCGATTATGTCGACGTTGATGATATGTGAAATGACCGGGGAGTATCAGCTAc                                                                                                >  1:47819/1‑100 (MQ=255)
     cTCGGATTGACCGGGATGGCGACACTGTTGGCGGCGACCACGCACGCGCCGATTATGTCGACGTTGATGATATGTGAAATGACCGGGGAGTATCAGCTAc                                                                                                <  2:663220/100‑1 (MQ=255)
          aTTGACCGGGATGGCGACACTGTTGGCGGCGACCACGCACGCGCCGATTATGTCGACGTTGATGATATGTGAAATGACCGGGGAGTATCAGCTACTcccc                                                                                           <  2:158322/100‑1 (MQ=255)
          aTTGACCGGGATGGCGACACTGTTGGCGGCGACCACGCACGCGCCGATTATGTCGACGTTGATGATATGTGAAATGACCGGGGAGTAGCTGATACTcccc                                                                                           <  1:1948512/100‑1 (MQ=255)
          aTTGACCGGGATGGCGACACTGTTGGCGGCGACCACGCACGCGCCGATTATGTCGACGTTGATGATATGTGAAATGACCGGGGAGTAGCTGATACTcccc                                                                                           <  2:816371/100‑1 (MQ=255)
            tGACCGGGATGGCGACACTGTTGGCGGCGACCACGCACGCGCCGATTATGTCGACGTTGATGATATGTGAAATGACCGGGGAGTATCAGCTACTCCCCgg                                                                                         >  1:211790/1‑100 (MQ=255)
            tGACCGGGATGGCGACACTGTTGGCGGCGACCACGCACGCGCCGATTATGTCGACGTTGATGATATGTGAAATGACCGGGGAGTATCAGCTACTCCCCgg                                                                                         <  1:2361262/100‑1 (MQ=255)
            tGACCGGGATGGCGACACTGTTGGCGGCGACCACGCACGCGCCGATTATGTCGACGTTGATGATATGTGAAATGACCGGGGAGTAGCTGATACTCCCCgg                                                                                         <  1:295192/100‑1 (MQ=255)
            tGACCGGGATGGCGACACTGTTGGCGGCGACCACGCACGCGCCGATTATGTCGACGTTGATGATATGTGAAATGACCGGGGAGTAGCTGATACTCCCCgg                                                                                         <  1:2542404/100‑1 (MQ=39)
             gACCGGGATGGCGACACTGTTGGCGGCGACCACGCACGCGCCGATTATGTCGACGTTGATGATATGTGAAATGACCGGGGAGTATCAGCTACTCCCCGGt                                                                                        >  1:278026/1‑100 (MQ=255)
             gACCGGGATGGCGACACTGTTGGCGGCGACCACGCACGCGCCGATTATGTCGACGTTGATGATATGTGAAATGACCGGGGAGTAGCTGATACTCCCCGGt                                                                                        <  1:1727387/100‑1 (MQ=39)
             gACCGGGATGGCGACACTGTTGGCGGCGACCACGCACGCGCCGATTATGTCGACGTTGATGATATGTGAAATGACCGGGGAGTAGCTGATACTCCCCGGt                                                                                        <  1:85000/100‑1 (MQ=39)
               ccGGGATGGCGACACTGTTGGCGGCGACCACGCACGCGCCGATTATGTCGACGTTGATGATATGTGAAATGACCGGGGAGTATCAGCTACTCCCCGGttt                                                                                      >  2:2195645/1‑100 (MQ=255)
                  ggATGGCGACACTGTTGGCGGCGACCACGCACGCGCCGATTATGTCGACGTTGATGATATGTGAAATGACCGGGGAGTATCAGCTACTCCCCGGTTTatt                                                                                   <  1:781997/100‑1 (MQ=255)
                   gATGGCGACACTGTTGGCGGCGACCACGCACGCGCCGATTATGTCGACGTTGATGATATGTGAAATGACCGGGGAGTATCAGCTACTCCCCGGTTTattg                                                                                  <  1:170427/100‑1 (MQ=255)
                   gATGGCGACACTGTTGGCGGCGACCACGCACGCGCCGATTATGTCGACGTTGATGATATGTGAAATGACCGGGGAGTAGCTGATACTCCCCGGtcatttc                                                                                  <  2:1734389/100‑7 (MQ=37)
                   cttGGCGACACTGTTGGCGGCGACCACGCACGCGCCGATTATGTCGACGTTGATGATATGTGAAATGACCGGGGAGTAGCTGATACTCCCCGGtcatttc                                                                                  <  1:730548/98‑7 (MQ=37)
                     tGGCGACACTGTTGGCGGCGACCACGCACGCGCCGATTATGTCGACGTTGATGATATGTGAAATGACCGGGGAGTATCAGCTACTCCCCGGTTTattgat                                                                                >  1:2008600/1‑100 (MQ=255)
                     tGGCGACACTGTTGGCGGCGACCACGCACGCGCCGATTATGTCGACGTTGATGATATGTGAAATGACCGGGGAGTAGCTGATACTCCCCGGtcatttcag                                                                                >  2:730544/1‑92 (MQ=37)
                      ggCGACACTGTTGGCGGCGACCACGCACGCGCCGATTATGTCGACGTTGATGATATGTGAAATGACCGGGGAGTATCAGCTACTCCCCGGTTTattgatt                                                                               <  2:2690237/100‑1 (MQ=255)
                       gCGACACTGTTGGCGGCGACCACGCGCGCGCCGATTATGTCGACGTTGATGATATGTGAAATGACCGGGGAGTATCAGCTACTCCCCGGTTTattgattg                                                                              <  2:488062/100‑1 (MQ=255)
                       gCGACACTGTTGGCGGCGACCACGCACGCGCCGATTATGTCGACGTTGATGATATGTGAAATGACCGGGGAGTATCAGCTACTCCCCGGTTTattgattg                                                                              >  1:814609/1‑100 (MQ=255)
                       gCGACACTGTTGGCGGCGACCACGCACGCGCCGATTATGTCGACGTTGATGATATGTGAAATGACCGGGGAGTATCAGCTACTCCCCGGTTTattgattg                                                                              <  2:2551073/100‑1 (MQ=255)
                           cacTGTTGGCGGCGACCACGCACGCGCCGATTATGTCGACGTTGATGATATGTGAAATGACCGGGGAGTATCAGCTACTCCCCGGTTTATTGATTGCCTg                                                                          <  2:2643155/100‑1 (MQ=255)
                           cacTGTTGGCGGCGACCACGCACGCGCCGATTATGTCGACGTTGATGATATGTGAAATGACCGGGGAGTATCAGCTACTCCCCGGTTTATTGATTGCCTg                                                                          >  2:376914/1‑100 (MQ=255)
                           cacTGTTGGCGGCGACCACGCACGCGCCGATTATGTCGACGTTGATGATATGTGAAATGACCGGGGAGTATCAGCTACTCCCCGGTTTATTGATTGCCTg                                                                          <  2:1209565/100‑1 (MQ=255)
                             cTGTTGGCGGCGACCACGCACGCGCCGATTATGTCGACGTTGATGATATGTGAAATGACCGGGGAGTATCAGCTACTCCCCGGTTTATTGATTGCCTGCg                                                                        <  1:2255843/100‑1 (MQ=255)
                             cTGTTGGCGGCGACCACGCACGCGCCGATTATGTCGACGTTGATGATATGTGAAATGACCGGGGAGTATCAGCTACTCCCCGGTTTATTGATTGCCTGCg                                                                        <  2:2624074/100‑1 (MQ=255)
                             cTGTTGGCGGCGACCACGCACGCGCCGATTATGTCGACGTTGATGATATGTGAAATGACCGGGGAGTATCAGCTACTCCCCGGTTTATTGATTGCCTGCg                                                                        <  1:2151345/100‑1 (MQ=255)
                              tGTTGGCGGCGACCACGCACGCGCCGATTATGTCGACGTTGATGATATGTGAAATGACCGGGGAGTATCAGCTACTCCCCGGTTTATTGATTGCCTGCGt                                                                       >  1:396232/1‑100 (MQ=255)
                                ttGGCGGCGACCACGCACGCGCCGATTATGTCGACGTTGATGATATGTGAAATGACCGGGGAGTATCAGCTACTCCCCGGTTTATTGATTGCCTGCGTaa                                                                     >  1:2725878/1‑100 (MQ=255)
                                    cggcgACCACGCACGCGCCGATTATGTCGACGTTGATGATATGTGAAATGACCGGGGAGTATCAGCTACTCCCCGGTTTATTGATTGCCTGCGTAATTGc                                                                 >  2:2222200/1‑100 (MQ=255)
                                       cgACCACGCACGCGCCGATTATGTCGACGTTGATGATATGTGAAATGACCGGGGAGTATCAGCTACTCCCCGGTTTATTGATTGCCTGCGTAATTGCGTc                                                              >  1:199440/1‑100 (MQ=255)
                                          ccACGCACGCGCCGATTATGTCGACGTTGATGATATGTGAAATGACCGGGGAGTATCAGCTACTCCCCGGTTTATTGATTGCCTGCGTAATTGCGTCGGt                                                           <  1:1935500/100‑1 (MQ=255)
                                           cacgcacgCGCCGATTATGTCGACGTTGATGATATGTGAAATGACCGGGGAGTATCAGCTACTCCCCGGTTTATTGATTGCCTGCGTAATTGCGTCGGTa                                                          >  1:1681043/1‑100 (MQ=255)
                                           cacgcacgCGCCGATTATGTCGACGTTGATGATATGTGAAATGACCGGGGAGTATCAGCTACTCCCCGGTTTATTGATTGCCTGCGTAATTGCGTCGGTa                                                          >  2:1194688/1‑100 (MQ=255)
                                             cgcacgcGCCGATTATGTCGACGTTGATGATATGTGAAATGACCGGGGAGTATCAGCTACTCCCCGGTTTATTGATTGCCTGCGTAATTGCGTCGGTAAt                                                        <  1:1194513/100‑1 (MQ=255)
                                             cgcacgcGCCGATTATGTCGACGTTGATGATATGTGAAATGACCGGGGAGTATCAGCTACTCCCCGGTTTATTGATTGCCTGCGTAATTGCGTCGGTAAt                                                        >  2:1040903/1‑100 (MQ=255)
                                                 cgcgCCGATTATGTCGACGTTGATGATATGTGAAATGACCGGGGAGTATCAGCTACTCCCCGGTTTATTGATTGCCTGCGTAATTGCGTCGGTAATTTcg                                                    <  1:2797371/100‑1 (MQ=255)
                                                  gcgcCGATTATGTCGACGTTGATGATATGTGAAATGACCGGGGAGTATCAGCTACTCCCCGGTTTATTGATTGCCTGCGTAATTGCGTCGGTAATTTct                                                    <  2:529773/99‑2 (MQ=255)
                                                   cgcCGATTATGTCGACGTTGATGATATGTGAAATGACCGGGGAGTATCAGCTACTCCCCGGTTTATTGATTGCCTGCGTAATTGCGTCGGTAATTTcgcg                                                  <  1:207185/100‑1 (MQ=255)
                                                   cgcCGATTATGTCGACGTTGATGATATGTGAAATGACCGGGGAGTATCAGCTACTCCCCGGTTTATTGATTGCCTGCGTAATTGCGTCGGTAATTTcgcg                                                  >  1:1755017/1‑100 (MQ=255)
                                                   cgcCGATTATGTCGACGTTGAGGATACGTGAAATGCCCGGGGAGTATCAGCTACTCCCCGGTTTATTGCTTGCCTGCGTAATTGCGTCGGTAATTTcgcg                                                  >  2:874972/1‑100 (MQ=255)
                                                    gcCGATTATGTCGACGTTGATGATATGTGAAATGACCGGGGAGTATCAGCTACTCCCCGGTTTATTGATTGCCTGCGTAATTGCGTCGGTAATTTcgcg                                                  <  2:230622/99‑1 (MQ=255)
                                                    gcCGATTATGTCGACGTTGATGATATGTGAAATGACCGGGGAGTATCAGCTACTCCCCGGTTTATTGATTGCCTGCGTAATTGCGTCGGTAATTTCGCgg                                                 <  1:1333213/100‑1 (MQ=255)
                                                            tGTCGACGTTGATGATATGTGAAATGACCGGGGAGTATCAGCTACTCCCCGGTTTATTGATTGCCTGCGTAATTGCGTCGGTAATTTCGCGGACGTTaca                                         >  1:1905135/1‑100 (MQ=255)
                                                                 aCGTTGATGATATGTGAAATGACCGGGGAGTATCAGCTACTCCCCGGTTTATTGATTGCCTGCGTAATTGCGTCGGTAATTTCGCGGACGTTACACCGTg                                    >  2:1498256/1‑100 (MQ=255)
                                                                 aCGTTGATGATATGTGAAATGACCGGGGAGTATCAGCTACTCCCCGGTTTATTGATTGCCTGCGTAATTGCGTCGGTAATTTCGCGGACGTTACACCGTg                                    >  2:920647/1‑100 (MQ=255)
                                                                   gTTGATGATATGTGAAATGACCGGGGAGTATCAGCTACTCCCCGGTTTATTGATTGCCTGCGTAATTGCGTCGGTAATTTCGCGGACGTTACACCGTGAc                                  <  2:278025/100‑1 (MQ=255)
                                                                   gTTGATGATATGTGAAATGACCGGGGAGTATCAGCTACTCCCCGGTTTATTGATTGCCTGCGTAATTGCGTCGGTAATTTCGCGGACGTTACACCGTGAc                                  >  2:2511926/1‑100 (MQ=255)
                                                                     tgatgaTATGTGAAATGACCGGGGAGTATCAGCTACTCCCCGGTTTATTGATTGCCTGCGTAATTGCGTCGGTAATTTCGCGGACGTTACACCGTGActc                                <  1:1040914/100‑1 (MQ=255)
                                                                      gatgatATGTGAAATGACCGGGGAGTATCAGCTACTCCCCGGTTTATTGATTGCCTGCGTAATTGCGTCGGTAATTTCGCGGACGTTACACCGTGActct                               >  2:2330000/1‑100 (MQ=255)
                                                                       atgatATGTGAAATGACCGGGGAGTATCAGCTACTCTCCGGTTTATTGATTGCCTGCGTAATTGCGTCGGTAATTTCGCGGACGTTACACCGTGACtcta                              >  2:879466/1‑100 (MQ=255)
                                                                       atgatATGTGAAATGACCGGGGAGTATCAGCTACTCCCCGGTTTATTGATTGCCTGCGTAATTGCGTCGGTAATTTCGCGGACGTTACACCGTGACtcta                              >  2:1884023/1‑100 (MQ=255)
                                                                       atgatATGTGAAATGACCGGGGAGTATCAGCTACTCCCCGGTTTATTGATTGCCTGCGTAATTGCGTCGGTAATTTCGCGGACGTTACACCGTGACtcta                              >  2:879467/1‑100 (MQ=255)
                                                                         gatATGTGAAATGACCGGGGAGTATCAGCTACTCCCCGGTTTATTGATTGCCTGCGTAATTGCGTCGGTAATTTCGCGGACGTTACACCGTGACtctatc                            >  2:2775126/1‑100 (MQ=255)
                                                                         gatATGTGAAATGACCGGGGAGTATCAGCTACTCCCCGGTTTATTGATTGCCTGCGTAATTGCGTCGGTAATTTCGCGGACGTTACACCGTGACtctatc                            >  2:1177862/1‑100 (MQ=255)
                                                                            atGTGAAATGACCGGGGAGTATCAGCTACTCCCCGGTTTATTGATTGCCTGCGTAATTGCGTCGGTAATTTCGCGGACGTTACACCGTGACTCTATCTAc                         >  2:563897/1‑100 (MQ=255)
                                                                             tgtgAAATGACCGGGGAGTATCAGCTACTCCCCGGTTTATTGATTGCCTGCGTAATTGCGTCGGTAATTTCGCGGACGTTACACCGTGACTCTATCTAcc                        <  1:3014152/100‑1 (MQ=255)
                                                                              gtgAAATGACCGGGGAGTATCAGCTACTCCCCGGTTTATTGATTGCCTGCGTAATTGCGTCGGTAATTTCGCGGACGTTACACCTTGACTCTATCTACCg                       >  2:2836323/1‑100 (MQ=255)
                                                                                gAAATGACCGGGGAGTATCGGCTACTCCCCGGTTTATTGATTGCCTGCGTAATTGCGTCGGTAATTTCGCGGACGTTACACCGTGACTCTATCTACCGcc                     >  1:456627/1‑100 (MQ=255)
                                                                                gAAATGACCGGGGAGTATCAGCTACTCCCCGGTTTATTGATTGCCTGCGTAATTGCGTCGGTAATTTCGCGGACGTTACACCGTGACTCTATCTACCGcc                     <  1:577620/100‑1 (MQ=255)
                                                                                gAAATGACCGGGGAGTATCAGCTACTCCCCGGTTTATTGATTGCCTGCGTAATTGCGTCGGTAATTTCGCGGACGTTACACCGTGACTCTATCTACCGcc                     >  2:2094558/1‑100 (MQ=255)
                                                                                 aataaaCCGGGGAGTAGCTGATACTCCCCGGTTTATTGATTGCCTGCGTAATTGCCTCGGTAATGTCGCGGACGTTACACCGTGACTCTATCTACCGCCa                    >  2:714898/6‑100 (MQ=37)
                                                                                   aTGACCGGGGAGTATCAGCTACTCCCCGGTTTATTGATTGCCTGCGTAATTGCGTCGGTAATTTCGCGGACGTTACACCGTGACTCTATCTACCGCCAGc                  <  1:2626976/100‑1 (MQ=255)
                                                                                   aTGACCGGGGAGTATCAGCTACTCCCCGGTTTATTGATTGCCTGCGTAATTGCGTCGGTAATTTCGCGGACGTTACACCGTGACTCTATCTACCGCCAGc                  >  1:2537283/1‑100 (MQ=255)
                                                                                   aTGACCGGGGAGTATCAGCTACTCCCCGGTTTATTGATTGCCTGCGTAATTGCGTCGGTAATTTCGCGGACGTTAAACAATGCCTCTATCTCCCGCCAGc                  >  1:2575896/1‑100 (MQ=255)
                                                                                    tGACCGGGGAGTATCAGCTACTCCCCGGTTTATTGATTGCCTGCGTAATTGCGTCGGTAATTTCGCGGACGTTACACCGTGACTCTATCTACCGCCAGca                 >  1:2454010/1‑100 (MQ=255)
                                                                                    aaaCCGGGGAGTAGCTGATACTCCCCGGTTTATTGATTGCCTGCGTAATTGCGTCGGTAATTTCGCGGACGTTACACCGTGACTCTATCTACCGCCAGca                 >  2:2066035/3‑100 (MQ=38)
                                                                                    aaaCCGGGGAGTAGCTGATACTCCCCGGTTTATTGATTGCCTGCGTAATTGCGTCGGTAATTTCGCGGACGTTACACCGTGACTCTATCTACCGCCAGca                 >  1:2206991/3‑100 (MQ=38)
                                                                                       ccGGGGAGTATCAGCTACTCCCCGGTTTATTGATTGCCTGCGTAATTGCGTCGGTAATTTCGCGGACGTTACACCGTGACTCTATCTACCGCCAGCacac              >  1:599473/1‑100 (MQ=255)
                                                                                       ccGGGGAGTATCAGCTACTCCCCGGTTTATTGATTGCCTGCGTAATTGCGTCGGTAATTTCGCGGACGTTACACCGTGACTCTATCTACCGCCAGCacac              >  1:487376/1‑100 (MQ=255)
                                                                                       ccGGGGAGTATCAGATTCTCCCCGGTGTAGTGATTGCCTGCGTAATTGCGTCGGGAATGTCGCGGACTTTACACCGTGACTCTATCTACCGCCAGca                 <  2:757703/97‑1 (MQ=255)
                                                                                       ccGGGGAGTAGCTGATACTCCCCGGTTTATTGATTGCCTGCGTAATTGCGTCGGTAATTTCGCGGACGTTACACCGTGACTCTATCTACCGCCAGTacac              >  1:243029/1‑100 (MQ=38)
                                                                                       ccGGGGAGTAGCTGATACTCCCCGGTTTATTGATTGCCTGCGTAATTGCGTCGGTAATTTCGCGGACGTTACACCGTGACTCTATCTACCGCCAGCacac              >  1:2638275/1‑100 (MQ=39)
                                                                                        cGGGGAGTAGCTGATACTCCCCGGTTTATTGATTGCCTGCGTAATTGCGTCGGTAATTTCGCGGACGTTACACCGTGACTCTATCTACCGCCAGCACACt             >  1:1340882/1‑100 (MQ=255)
                                                                                        cGGGGAGTAGCTGATACTCCCCGGTTTATTGATTGCCTGCGTAATTGCGTCGGTAATTTCGCGGACGTTACACCGTGACTCTATCTACCGCCAGCACACt             >  1:2879579/1‑100 (MQ=255)
                                                                                         tggcaGTATCATTTTCTCCCCGGTTTATTGATTGCCTCCGTAATTGCTTCGGTAATTTCTCGGACGTTACACCGTGACTCTATCTACCGCCAGCACACTg            <  2:2780069/96‑1 (MQ=255)
                                                                                         ggggAGTATCAGCTACTCCCCGGTTTATTGATTGCCTGCGTAATTGCGTCGGTAATTTCGCGGACGTTACACCGTGACTCTATCTACCGCCAGCACACTg            <  1:1031274/100‑1 (MQ=255)
                                                                                         ggggAGTATCAGCTACTCCCCGGTTTATTGATTGCCTGCGTAATTGCGTCGGTAATTTCGCGGACGTTACACCGTGACTCTATCTACCGCCAGCACACTg            >  1:536801/1‑100 (MQ=255)
                                                                                         ggggAGTAGCTGATACTCCGCGGTTTATTGATTGCCTGCGTAATTGCGTCGGTAATTTCGCGGACGTTACACTGTGACTCTATCTACCGCCAGCACACt             >  2:616518/1‑99 (MQ=255)
                                                                                         ggggAGTAGCTGATACTCCCCGGTTTATTGATTGCCTGCGTAATTGCGTCGGTAATTTCGCGGCCGTTACACCGTGACTCTATCTACCGCCAGCACACt             >  1:2679722/1‑99 (MQ=255)
                                                                                         ggggAGTAGCTGATACTCCCCGGTTTATTGATTGCCTGCGTAATTGCGTCGGTAATTTCGCGGACGTTACACCGTGACTCTATCTACCGCCAGCACACTg            >  1:1044777/1‑100 (MQ=255)
                                                                                            gAGTATCAGCTACTCCCCGGTTTATTGATTGCCTGCGTAATTGCGTCGGTAATTTCGCGGATGTTACACCGTGACTCTATCTACCGTCAGCACACTgcgc         <  2:1905114/100‑1 (MQ=255)
                                                                                             aGTATCAGCTACTCCCCTGTTTATTGATTGCCTGCGTAATTGCGTCGGTAATTTCGCGGACGTTACACCGTGACTCTATCTACCGCCAGCACACTGCgca        <  2:1414441/100‑1 (MQ=255)
                                                                                             aGTATCAGCTACTCCCCGGTTTATTGATTGCCTGCGTAATTGCGTCGGTAATTTCGCGGACGTTACACCGTGACTCTATCTACCGCCAGCACACTGCgca        >  1:817536/1‑100 (MQ=255)
                                                                                             aGTATCAGCTACTCCCCGGTTTATTGATTGCCTGCGTAATTGCGTCGGTAATTTCGCGGACGTTACACCGTGACTCTATCTACCGCCAGCACACTGCgca        <  1:2354894/100‑1 (MQ=255)
                                                                                              gTATCAGCTACTCCCCGGTTTATTGATTGCCTGCGTAATTGCGTCGGTAATTTCGCGGACGTTACACCGTGACTCTATCTACCGCCAGCACACTGCgcag       <  2:2332276/100‑1 (MQ=255)
                                                                                               tATCAGCTACTCCCCGGTTTATTGATTGCCTGCGTAATTGCGTCGGTAATTTCGCGGACGTTACACCGTGACTCTATCTACCGCCAGCACACTGCgcagc      <  1:2584398/100‑1 (MQ=255)
                                                                                                aTCAGCTACTCCCCGGTTTATTGATTGCCTGCGTAATTGCGTCGGTAATTTCGCGGACGTTACACCGTGACTCTATCTACCGCCAGCACACTGCgcagca     >  2:3053087/1‑100 (MQ=255)
                                                                                                 tCAGCTACTCCCCGGTTTATTGATTGCCTGCGTAATTGCGTCGGTAATTTCGCGGACGTTACACCGTGACTCTATCTACCGCCAGCACACTGCGCAGCAt    <  1:1152957/100‑1 (MQ=255)
                                                                                                 tCAGCTACTCCCCGGTTTATTGATTGCCTGCGTAATTGCGTCGGTAATTTCGCGGACGTTACACCGTGACTCTATCTACCGCCAGCACACTGCGCAGCAt    <  1:2775153/100‑1 (MQ=255)
                                                                                                 tCAGCTACTCCCCGGTTTATTGATTGCCTGCGTAATTGCGTCGGTAATTTCGCGGACGTTACACCGTGACTCTATCTACCGCCAGCACACTGCGCAGCAt    <  1:1151997/100‑1 (MQ=255)
                                                                                                  cAGCTACTCCCCGGTTTATTGATTGCCTGCGTAATTGCGTCGGTAATTTCGCGGACGTTACACCGTGACTCTATCTACCGCCAGCACACTGCGCAGCATa   >  1:1726947/1‑100 (MQ=255)
                                                                                                  cAGCTACTCCCCGGTTTATTGATTGCCTGCGTAATTGCGTCGGTAATTTCGCGGACGTTACACCGTGACTCTATCTACCGCCAGCACACTGCGCAGCATa   <  2:211789/100‑1 (MQ=255)
                                                                                                  cAGCTACTCCCAGGTTTATTGATTGCCTGCGTAATTGCGTCGGTAATTTCGCGGACGTTACACCGTGACTCTATCTACCGCCAGCACACTGCGCAGCATa   >  2:2373821/1‑100 (MQ=255)
                                                                                                   aGCTACTCCCCGGTTTATTGATTGCCTGCGTAATTGCGTCGGTAATTTCGCGGACGTTACACCGTGACTCTATCTACCGCCAGCACACTGCGCAGCATAg  >  2:687123/1‑100 (MQ=255)
                                                                                                   aGCTACTCCCCGGTTTATTGATTGCCTGCGTAATTGCGTCGGTAATTTCGCGGACGTTACACCGTGACTCTATCTACCGCCAGCACACTGCGCAGCATAg  >  1:2814188/1‑100 (MQ=255)
                                                                                                   aGCTACTCCCCGGTTTATTGATTGCCTGCGTAATTGCGTCGGTAATTTCGCGGACGTTACACCGTGACTCTATCTACCGCCAGCACACTGCGCAGCATAg  <  1:920656/100‑1 (MQ=255)
                                                                                                   aGCTACTCCCCGGTTTATTGATTGCCTGCGTAATTGCGTCGGTAATTTCGCGGACGTTACACCGTGACTCTATCTACCGCCAGCACACTGCGCAGCATAg  <  1:2449176/100‑1 (MQ=255)
                                                                                                   |                                                                                                   
TTTTACTCGGATTGACCGGGATGGCGACACTGTTGGCGGCGACCACGCACGCGCCGATTATGTCGACGTTGATGATATGTGAAATGACCGGGGAGTATCAGCTACTCCCCGGTTTATTGATTGCCTGCGTAATTGCGTCGGTAATTTCGCGGACGTTACACCGTGACTCTATCTACCGCCAGCACACTGCGCAGCATAG  >  NC_000913/1666369‑1666567

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑