Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,143,641 G→A H243Y (CAT→TAT)  rne ← endoribonuclease; RNA‑binding protein;RNA degradosome binding protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,143,6410GA98.3% 390.2 / ‑2.5 117H243Y (CAT→TAT) rneendoribonuclease; RNA‑binding protein;RNA degradosome binding protein
Reads supporting (aligned to +/- strand):  ref base G (2/0);  new base A (61/53);  total (63/54)
Fisher's exact test for biased strand distribution p-value = 4.99e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.52e-01

Only 100 of 117 total aligned reads displayed.

TCTGTGACTCGATCTGGTAGTGGCTGAACAGCGGGATCTCGCCGGTGTACAGTTTGA‑TTTTGCTGCTGAAATCCGGGCGACCTAATGCAGCGATATGCTGACGTGCCAGTTCGAGCACTTTCGGGTTATCGATAAGGATTTCGCCGATGTCCTGACGTAAGTAATCGCGGAATGCGCGAACGATTACGTTGC  >  NC_000913/1143545‑1143736
                                                                                                 |                                                                                               
tCTGTGACTCGATCTGGTAGTGGCTGAACAGCGGGATCTCGCCGGTGTACAGTTTGA‑TTTTGCTGCTGAAATCCGGGCGACCTAATGCAGCGATATGCTg                                                                                              >  2:917151/1‑100 (MQ=255)
tCTGTGACTCGATCTGGTAGTGGCTGAACAGCGGGATCTCGCCGGTGTACAGTTTGA‑TTTTGCTGCTGAAATCCGGGCGACCTAATGCAGCGATATACTg                                                                                              <  2:90113/100‑1 (MQ=255)
  tgtgACTCGATCTGGTAGTGGCTGAACAGCGGGATCTCGCCGGTGTACAGTTTGA‑TTTTGCTGCTGAAATCCGGGCGACCTAATGCAGCGATATACTGAc                                                                                            >  2:1326336/1‑100 (MQ=255)
   gtgACTCGATCTGGTAGTGGCTGAACAGCGGGATCTCGCCGGTGTACAGTTTGA‑TTTTGCTGCTGAAATCCGGGCGACCTAATGCAGCGATATACTGACg                                                                                           >  2:501047/1‑100 (MQ=255)
   gtgACTCGATCTGGTAGTGGCTGAACAGCGGGATCTCGCCGGTGTACAGTTTGA‑TTTTGCTGCTGAAATCCGGGCGACCTAATGCAGCGATATACTGACg                                                                                           <  1:2369326/100‑1 (MQ=255)
   gtgACTCGATCTGGTAGTGGCTGAACAGCGGGATCTCGCCGGTGTACAGTTTGA‑TTTTGCTGCTGAAATCCGGGCGACCTAATGCAGCGATATACTGACg                                                                                           >  1:2427161/1‑100 (MQ=255)
   gtgACTCGATCTGGTAGTGGCTGAACAGCGGGATCTCGCCGGTGTACAGTTTGA‑TTTTGCTGCTGAAATCCGGGCGACCTAATGCAGCGATATACTGACg                                                                                           <  2:3061180/100‑1 (MQ=255)
     gACTCGATCTGGTAGTGGCTGAACAGCGGGATCTCGCCGGTGTACAGTTTGA‑TTTTGCTGCTGAAATCCGGGCGACCTAATGCAGCGATATACTGACGTg                                                                                         >  2:1613926/1‑100 (MQ=255)
      aCTCGATCTGGTAGTGGCTGAACAGCGGGATCTCGCCGGTGTACAGTTTGA‑TTTTGCTGCTGAAATCCGGGCGACCTAATGCAGCGATATACTGACGTGc                                                                                        >  2:1180838/1‑100 (MQ=255)
       cTCGATCTGGTAGTGGCTGAACAGCGGGATCTCGCCGGTGTACAGTTTGA‑TTTTGCTGCTGAAATCCGGGCGACCTAATGCAGCGATATACTGACGTGcc                                                                                       >  2:2820392/1‑100 (MQ=255)
            tCTGGTAGTGGCTGAACAGCGGGATCTCGCCGGTGTACAGTTTGA‑TTTTGCTGCTGAAATCCGGGCGACCTAATGCAGCGATATACTGACGTGCCAGTTc                                                                                  <  2:2726527/100‑1 (MQ=255)
            tCTGGTAGTGGCTGAACAGCGGGATCTCGCCGGTGTACAGTTTGA‑TTTTGCTGCTGAAATCCGGGCGACCTAATGCAGCGATATACTGACGTGCCAGTTc                                                                                  >  1:2781207/1‑100 (MQ=255)
             cttccgatctcTGAACAGCGGGATCTCGCCGGTGTACAGTTTGA‑TTTTGCTGCTGAAATCCGGGCGACCTAATGCAGCGATATACTGACGTGCCAGTTCg                                                                                 <  1:1924937/90‑1 (MQ=255)
              tGGTAGTGGCTGAACAGCGGGATCTCGCCGGTGTACAGTTTGA‑TTTTGCTGCTGAAATCCGGGCGACCTAATGCAGCGATATACTGACGTGCCAGTTCGa                                                                                >  1:3038/1‑100 (MQ=255)
              tGGTAGTGGCTGAACAGCGGGATCTCGCCGGTGTACAGTTTGA‑TTTTGCTGCTGAAATCCGGGCGACCTAATGCAGCGATATACTGACGTGCCAGTTCGa                                                                                <  1:1936913/100‑1 (MQ=255)
               ggTAGTGGCTGAACAGCGGGATCTCGCCGGTGTACAGTTTGA‑TTTTGCTGCTGAAATCCGGGCGACCTAATGCAGCGATATACTGACGTGCCAGTTCg                                                                                 <  2:1866975/98‑1 (MQ=255)
               ggTAGTGGCTGAACAGCGGGATCTCGCCGGTGTACAGTTTGA‑TTTTGCTGCTGAAATCCGGGCGACCTAATGCAGCGATATACTGACGTGCCAGTTCGAg                                                                               <  1:774710/100‑1 (MQ=255)
               ggTAGTGGCTGAACAGCGGGATCTCGCCGGTGTACAGTTTGA‑TTTTGCTGCTGAAATCCGGGCGACCTAATGCAGCGATATACTGACGTGCCAGTTCGAg                                                                               <  1:773994/100‑1 (MQ=255)
               ggTAGTGGCTGAACAGCGGGATCTCGCCGGTGTACAGTTTGA‑TTTTGCTGCTGAAATCCGGGCGACCTAATGCAGCGATATACTGACGTGCCAGTTCGAg                                                                               >  1:2870465/1‑100 (MQ=255)
               ggTAGTGGCTGAACAGCGGGATCTCGCCGGTGTACAGTTTGA‑TTTTGCTGCTGAAATCCGGGCGACCTAATGCAGCGATATACTGACGTGCCAGTTCGAg                                                                               <  2:647907/100‑1 (MQ=255)
                gTAGTGGCTGAACAGCGGGATCTCGCCGGTGTACAGTTTGA‑TTTTGCTGCTGAAATCCGGGCGACCTAATGCAGCGATATACTGACGTGCCAGTTCGAGc                                                                              <  1:1180848/100‑1 (MQ=255)
                gTAGTGGCTGAACAGCGGGATCTCGCCGGTGTACAGTTTGA‑TTTTGCTGCTGAAATCCGGGCGACCTAATGCAGCGATATACTGACGTGCCAGTTCGAGc                                                                              <  1:435871/100‑1 (MQ=255)
                  aGTGGCTGAACAGCGGGATCTCGCCGGTGTACAGTTTGA‑TTTTGCTGCTGAAATCCGGGCGACCTAATGCAGCGATATACTGACGTGCCAGTTCGAGCAc                                                                            >  1:1499773/1‑100 (MQ=255)
                  aGTGGCTGAACAGCGGGATCTCGCCGGTGTACAGTTTGA‑TTTTGCTGCTGAAATCCGGGCGACCTAATGCAGCGATATACTGACGTGCCAGTTCGAGCAc                                                                            >  2:1181736/1‑100 (MQ=255)
                   gTGGCTGAACAGCGGGATCTCGCCGGTGTACAGTTTGA‑TTTTGCTGCTGAAATCCGGGCGACCTAATGCAGCGATATACTGACGTGCCAGTTCGAGCACt                                                                           <  1:1139148/100‑1 (MQ=255)
                   gTGGCTGAACAGCGGGATCTCGCCGGTGTACAGTTTGA‑TTTTGCTGCTGAAATCCGGGCGACCTAATGCAGCGATATACTGACGTGCCAGTTCGAGCACt                                                                           >  2:40613/1‑100 (MQ=255)
                     ggCTGAACAGCGGGATCTCGCCGGTGTACAGTTTGA‑TTTTGCTGCTGAAATCCGGGCGACCTAATGCAGCGATATACTGACGTGCCAGTTCGAGCACttt                                                                         >  2:2407410/1‑100 (MQ=255)
                       cTGAACAGCGGGATCTCGCCGGTGTACAGTTTGATTTTTCCTGCTGAAATCCGGGCGACCTAATGCAGGGATTTACTGACGTGCCAGTTCGAGAACTTTc                                                                        >  2:1668523/1‑100 (MQ=255)
                       cTGAACAGCGGGATCTCGCCGGTGTACAGTTTGA‑TTTTGCTGCTGAAATCCGGGCGACCTAATGCAGCGATATACTGACGTGCCAGTTCCAGCACTTTCg                                                                       >  2:1088360/1‑100 (MQ=255)
                         gAACAGCGGGATCTCGCCGGTGTACAGTTTGA‑TTTTGCTGCTGAAATCCGGGCGACCTCATGCAGCGATATACTGACGTGCCAGTTCGAGCACTTTCggg                                                                     >  1:2874393/1‑100 (MQ=255)
                         gAACAGCGGGATCTCGCCGGTGTACAGTTTGA‑TTTTGCTGCTGAAATCCGGGCGACCTAATGCAGCGATATACTGACGTGCCAGTTCGCGCACTTTCggg                                                                     >  1:1801747/1‑100 (MQ=255)
                         gAACAGCGGGATCTCGCCGGTGTACAGTTTGA‑TTTTGCTGCTGAAATCCGGGCGACCTAATGCAGCGATATACTGACGTGCCAGTTCGAGCACTTTCggg                                                                     <  1:1024451/100‑1 (MQ=255)
                          aagaGCGGGTGCTCGCCGGTGTACAGTTTGA‑TTTGGCTGCTGAAATCCGGGCGACCTAATGCAGCGATATACTGACGTGCCAGTTCGAGCACTTTCGGGt                                                                    <  1:2110781/97‑1 (MQ=255)
                          aaCAGCGGGATCTCGCCGGTGTACAGTTTGA‑TTTTGCTGCTGAAATCCGGGCGACCTAATGCAGCGATATACTGACGTGCCAGTTCGAGCACTTTCGGGt                                                                    <  1:501048/100‑1 (MQ=255)
                           aCAGCGGGATCTCCCCGGTGTACAGTTTGA‑TTTTGCTGCTGAAATCCGGGCGACCTAATGCAGCGATATACTGACGTGCCAGTTCGAGCACTTTCGGGtt                                                                   >  1:1429722/1‑100 (MQ=255)
                            cAGCGGGATCTCGCCGGTGTACAGTTTGA‑TTTTGCTGCTGAAATCCGGGCGACCTAATGCAGCGATATACTGACGTGCCAGTTCGAGCACTTTCGGGTTa                                                                  >  1:2612583/1‑100 (MQ=255)
                             ngCGGGATCTCGCCGGTGTACAGTTTGA‑TTTTGCTGCTGAAATCCGGGCGACCTAATGCAGCGATATACTGACGTGCCAGTTCGAGCACTTTCGGGTTAt                                                                 >  2:2222640/2‑100 (MQ=255)
                             aGCGGGATCTCGCCGGTGTACAGTTTGA‑TTTTGCTGCTGAAATCCGGGCGACCTAATGCAGCGATATACTGACGTGCCAGTTCGAGCACTTTCGGGTTAt                                                                 <  1:2996887/100‑1 (MQ=255)
                              gCGGGATCTCGCCGGTGTACAGTTTGA‑TTTTGCTGCTGAAATCCGGGCGACCTAATGCAGCGATATACTGACGTGCCAGTTCGAGCACTTTCGGGTTATc                                                                >  1:2924919/1‑100 (MQ=255)
                              gCGGGATCTCGCCGGTGTACAGTTTGA‑TTTTGCTGCTGAAATCCGGGCGACCTAATGCAGCGATATACTGACGTGCCAGTTCGAGCACTTTCGGGTTATc                                                                >  2:257527/1‑100 (MQ=255)
                               cGGGATCTCGCCGGTGTACAGTTTGA‑TTTTGCTGCTGAAATCCGGGCGACCTAATGCAGCGATATACTGACGTGCCAGTTCGAGCACTTTCGGGTTATCg                                                               <  1:547919/100‑1 (MQ=255)
                                gggATCTCGCCGGTGTACAGTTTGA‑TTTTGCTGCTGAAATCCGGGCGACCTAATGCAGCGATATACTGACGTGCCAGTTCGAGCACTTTCGGGTTATCGa                                                              >  1:2301801/1‑100 (MQ=255)
                                gggATCTCGCCGGTGTACAGTTTGA‑TTTTGCTGCTGAAATCCGGGCGACCTAATGCAGCGATATACTGACGTGCCAGTTCGAGCACTTTCGGGTTATCGa                                                              >  2:2344894/1‑100 (MQ=255)
                                   aTCTCGCCGGTGTACAGTTTGA‑TTTTGCTGCTGAAATCCGGGCGACCTAATGCAGCGATATACTGACGTGCCAGTTCGAGCACTTTCGGGTTATCGATaa                                                           <  2:3086223/100‑1 (MQ=255)
                                    tctcGCCGGTGTACAGTTTGA‑TTTTGCTGCTGAAATCCGGGCGACCTAATGCAGCGATATACTGACGTGCCAGTTCGAGCACTTTCGGGTTATCGATAAg                                                          <  1:40613/100‑1 (MQ=255)
                                      tcGCCGGTGTACAGTTTGA‑TTTTGCTGCTGAAATCCGGGCGACCTAATGCAGCGATATACTGACGTGCCAGTTCGAGCACTTTCGGGTTATCGATAAGGa                                                        >  2:2484768/1‑100 (MQ=255)
                                       cGCCGGTGTACAGTTTGA‑TTTTGCTGCTGAAATCCGGGCGACCTAATGCAGCGATATACTGACGTGCCAGTTCGAGCACTTTCGGGTTATCGATAAGGAt                                                       >  1:512720/1‑100 (MQ=255)
                                       cGCCGGTGTACAGTTTGA‑TTTTGCTGCTGAAATCCGGGCGACCTAATGCAGCGATATACTGACGTGCCAGTTCGAGCACTTTCGGGTTATCGATAAGGAt                                                       >  1:2485007/1‑100 (MQ=255)
                                       cGCCGGTGTACAGTTTGA‑TTTTGCTGCTGAAATCCGGGCGACCTAATGCAGCGATATACTGACGTGCCAGTTCGAGCACTTTCGGGTTATCGATAAGGAt                                                       >  1:1849514/1‑100 (MQ=255)
                                          cGGTGTACAGTTTGA‑TTTTGCTGCTGAAATCCGGGCGACCTAATGCAGCGATATACTGACGTGCCAGTTCGAGCACTTTCGGGTTATCGATAAGGATTTc                                                    <  1:2344917/100‑1 (MQ=255)
                                           ggTGTACAGTTTGA‑TTTTGCTGCTGAAATCCGGGCGACCTAATGCAGCGATATACTGACGTGCCAGTTCGAGCACTTTCGGGTTATCGATAAGGATTTCg                                                   >  2:1991420/1‑100 (MQ=255)
                                           ggTGTACAGTTTGA‑TTTTGCTGCTGAAATCCGGGCGACCTAATGCAGCGATATACTGACGTGCCAGTTCGAGCACTTTCGGGTTATCGATAAGGATTTCg                                                   >  1:819555/1‑100 (MQ=255)
                                           ggTGTACAGTTTGA‑TTTTGCTGCTGAAATCCGGGCGACCTAATGCAGCGATATACTGACGTGCCAGTTCGAGCACTTTCGGGTTATCGATAAGGATTTCg                                                   >  1:1204824/1‑100 (MQ=255)
                                           ggTGGACAGTTTGA‑GTTTGCTGCGGAAATCCGGGCGACCTAATGCAGCGATATACTGACGTGCCAGTTCGAGCACTTTCGGGTTATCGATAAGGATTTCg                                                   <  2:1148191/100‑1 (MQ=255)
                                             tgtACAGTTTGA‑TTTTGCTGCTGAAATCCGGGCGACCTAATGCAGCGATATACTGACGTGCCAGTTCGAGCACTTTCGGGTTATCGATAAGGATTTCGcc                                                 <  2:762007/100‑1 (MQ=255)
                                             tgtACAGTTTGA‑TTTTGCTGCTGAAATCCGGGCGACCTAATGCAGCGATATACTGACGTGCCAGTTCGAGCACTTTCGGGTTATCGATAAGGATTTCGcc                                                 <  2:85438/100‑1 (MQ=255)
                                              gtACAGTTTGA‑TTTTGCTGCTGAAATCCGGGCGACCTAATGCAGCGATATACTGACGTGCCAGTTCGAGCACTTTCGGGTTATCGATAAGGATTTCGCCg                                                >  2:2971955/1‑100 (MQ=255)
                                               tACAGTTTGA‑TTTTGCTGCTGAAATCCGGGCGACCTAATGCAGCGATATACTGACGTGCCAGTTCGAGCACTTTCGGGTTATCGATAAGGATTTCGCCGa                                               <  2:2074410/100‑1 (MQ=255)
                                                aCAGTTTGA‑TTTTGCTGCTGAAATCCGGGCGACCTAATGCAGCGATATACTGACGTGCCAGTTCGAGCACTTTCGGGTTATCGATAAGGATTTCGCCGAt                                              >  2:2720528/1‑100 (MQ=255)
                                                 cAGTTTGA‑TTTTGCTGCTGAAATCCGGGCGACCTAATGCAGCGATATACTGACGTGCCAGTTCGAGCACTTTCGGGTTATCGATAAGGATTTCGCCGATg                                             <  2:1458839/100‑1 (MQ=255)
                                                 cAGTTTGA‑TTTTGCTGCTGAAATCCGGGCGACCTAATGCAGCGATATACTGACGTGCCAGTTCGAGCACTTTCGGGTTATCGATAAGGATTTCGCCGATg                                             >  2:1500129/1‑100 (MQ=255)
                                                   gTTTGA‑TTTTGCTGCTGAAATCCGGGCGACCTAATGCAGCGATATACTGACGTGCCAGTTCGAGCACTTTCGGGTTATCGATAAGGATTTCGCCGATGTc                                           >  1:1301033/1‑100 (MQ=255)
                                                   gTTTGA‑TTTTGCTGCTGAAATCCGGGCGACCTAATGCAGCGATATACTGACGTGCCAGTTCGAGCACTTTCGGGTTATCGATAAGGATTTCGCCGATGTc                                           >  2:1310559/1‑100 (MQ=255)
                                                    tttGA‑TTTTGCTGCTGAAATCCGGGCGACCTAATGCAGCGATATACTGACGTGCCAGTTCGAGCACTTTCGGGTTATCGATAAGGATTTCGCCGATGTcc                                          <  1:523239/100‑1 (MQ=255)
                                                       gA‑TTTTGCTGCTGAAATCCGGGCGACCTAATGCAGCGATATACTGACGTGCCAGTTCGAGCACGTTCGGGTTATCGATAAGGATTTCGCCGATGTCCTGa                                       >  2:1530031/1‑100 (MQ=255)
                                                        a‑TTTTGCTGCTGAAATCCGGGCGACCTAATGCAGCGATATACTGACGTGCCAGTTCGAGCACTTTCGGGTTATCGATAAGGATTTCGCCGATGTCCTGAc                                      >  1:905430/1‑100 (MQ=255)
                                                           tttGCTGCTGAAATCCGGGCGACCTAATGCAGCGATATACTGACGTGCCAGTTCGAGCACTTTCGGGTTATCGATAAGGATTTCGCCGATGTCCTGACgt                                    >  1:1549566/1‑100 (MQ=255)
                                                            ttGCTGCTGAAATCCGGGCGACCTAATGCAGCGATATACTGACGTGCCAGTTCGAGCACTTTCGGGTTATCGATAAGGATTTCGCCGATGTCCTGACgta                                   <  2:1980162/100‑1 (MQ=255)
                                                            ttGCTGCTGAAATCCGGGCGACCTAATGCAGCGATATACTGACGTGCCAGTTCGAGCACTTTCGGGTTATCGATAAGGATTTCGCCGATGTCCTGACgta                                   <  1:2884929/100‑1 (MQ=255)
                                                              gctgctGAAATCCGGGCGACCTAATGCAGCGATATACTGACGTGCCAGTTCGAGCACTTTCGGGTTATCGATAAGGATTTCGCCGATGTCCTGACgtaag                                 <  2:853890/100‑1 (MQ=255)
                                                              gctgctGAAATCCGGGCGACCTAATGCAGCGATATACTGACGTGCCAGTTCGAGCACTTTCGGGTTATCGATAAGGATTTCGCCGATGTCCTGACgtaag                                 <  2:1703104/100‑1 (MQ=255)
                                                               ctgctgAAATCCGGGCGACCTAATGCAGCGATATACTGACGTGCCAGTTCGAGCACTTTCGGGTTATCGATAAGGATTTCGCCGATGTCCTGACgtaagt                                <  2:1849494/100‑1 (MQ=255)
                                                               ctgctgAAATCCGGGCGACCTAATGCAGCGATATACTGACGTGCCAGTTCGAGCACTTTCGGGTTATCGATAAGGATTTCGCCGATGTCCTGACgtaagt                                <  2:2924889/100‑1 (MQ=255)
                                                               ctgctgAAATCCGGGCGACCTAATGCAGCGATATACTGACGTGCCAGTTCGAGCACTTTCGGGTTATCGATAAGGATTTCGCCGATGTCCTGACgtaagt                                <  1:2502590/100‑1 (MQ=255)
                                                                tgctgAAATCCGGGCGACCTAATGCAGCGATATACTGACGTGCCAGTTCGAGCACTTTCGGGTTATCGATAAGGATTTCGCCGATGTCCTGACgtaagta                               >  1:481078/1‑100 (MQ=255)
                                                                 gctgAAATCCGGGCGACCTAATGCAGCGATATACTGACGTGCCAGTTCGAGCACTTTCGGGTTATCGATAAGGATTTCGCCGATGTCCTGACgtaagtaa                              >  2:470333/1‑100 (MQ=255)
                                                                  ctgAAATCCGGGCGACCTAATGCAGCGATATACTGACGTGCCAGTTCGAGCACTTTCGGGTTATCGATAAGGATTTCGCCGATGTCCTGACGTAAGTAAt                             >  1:2553400/1‑100 (MQ=255)
                                                                   tgAAATCCGGGCGACCTAATGCAGCGATATACTGACGTGCCAGTTCGAGCACTTTCGGGTTATCGATAAGGATTTCGCCGAGGTCCTGACGTAAGTAATc                            >  1:1199827/1‑100 (MQ=255)
                                                                      aaTCCGGGCGACCTAATGCAGCGATATACTGACGTGCCAGTTCGAGCACTTTCGGGTTATCGATAAGGATTTCGCCGATGTCCTGACGTAAGTAATcgcg                         >  2:49573/1‑100 (MQ=255)
                                                                      aaTACGGGCGACCTAATGCAGCGATATCCTGACGTGCCAGTTCGAGCACTTTCGGGTTATCGATAAGGATTTCGCCGATGTCCTGACGTAAGTAATcg                           <  2:2618482/98‑1 (MQ=255)
                                                                       agccGGGCGACCTAATGCAGCGATATACTGACGTGCCAGTTCGAGCACTTTCGGGTTATCGATAAGGATTTCGCCGATGTCCTGACGTAAGTAATCGCgg                        >  1:2094720/3‑100 (MQ=255)
                                                                       aTCCGGGCGACCTAATGCAGCGATATACTGACGTGCCAGTTCGAGCACTTTCGGGTTATCGATAAGGATTTCGCCGATGTCCTGACGTAAGTAATCGCgg                        <  1:778296/100‑1 (MQ=255)
                                                                          cGGGCGACCTAATGCAGCGATATACTGACGTGCCAGTTCGAGCACTTTCGGGTTATCGATAAGGATTTCGCCGATGTCCTGACGTAAGTAATCGCGGAAt                     >  1:2441066/1‑100 (MQ=255)
                                                                           gggCGACCTAATGCAGCGATATACTGACGTGCCAGTTCGAGCACTTTCGGGTTATCGATAAGGATTTCGCCGATGTCCTGACGTAAGTAATCGCGGAATg                    >  2:905286/1‑100 (MQ=255)
                                                                              cGACCTAATGCAGCGATATACTGACGTGCCAGTTCGAGCACTTTCGGGTTATCGATAAGGATTTCGCCGATGTCCTGACGTAAGTAATCGCGGAATgcgc                 <  1:706184/100‑1 (MQ=255)
                                                                                aCCTAATGCAGCGATATACTGACGTGCCAGTTCGAGCACTTTCGGGTTATCGATAAGGATTTCGCCGATGTCCTGACGTAAGTAATCGCGGAATGCGCGa               >  1:2448036/1‑100 (MQ=255)
                                                                                aCCTAATGCAGCGATATACTGACGTGCCAGTTCGAGCACTTTCGGGTTATCGATAAGGATTTCGCCGATGTCCTGACGTAAGTAATCGCGGAATGCGCGa               >  1:1214332/1‑100 (MQ=255)
                                                                                 ccTAATGCAGCGATATACTGACGTGCCAGTTCGAGCACTTTCGGGTTATCGATAAGGATTTCGCCGATGTCCTGACGTAAGTAATCGCGGAATGCGCGaa              >  1:2244542/1‑100 (MQ=255)
                                                                                 ccTAATGCAGCGATATACTGACGTGCCAGTTCGAGCACTTTCGGGTTATCGATAAGGATTTCGCCGATGTCCTGACGTAAGTAATCGCGGAATGCGCGaa              <  1:1500143/100‑1 (MQ=255)
                                                                                  cTAATGCAGCGATATACTGACGTGCCAGTTCGAGCACTTTCGGGTTATCGATAAGGATTTCGCCGATGTCCTGACGTAAGTAATCGCGGAATGCGCGAAc             >  1:2238873/1‑100 (MQ=255)
                                                                                  cTAATGCAGCGATATACTGACGTGCCAGTTCGAGCACTTTCGGGTTATCGATAAGGATTTCGCCGATGTCCTGACGTAAGTAATCGCGGAATGCGCGAAc             <  2:1199817/100‑1 (MQ=255)
                                                                                  cTAATGCAGCGATATACTGACGTGCCAGTTCGAGCACTTTCGGGTTATCGATAAGGATTTCGCCGATGTCCTGACGTAAGTAATCGCGGAATGCGCGAAc             <  2:1429709/100‑1 (MQ=255)
                                                                                  cTAATGCAGCGATATACTGACGTGCCAGTTCGAGCACTTTCGGGTTATCGATAAGGATTTCGCCGATGTCCTGACGTAAGTAATCGCGGAATGCGCGAAc             <  1:2829114/100‑1 (MQ=255)
                                                                                    aaTGCAGCGATATACTGACGTGCCAGTTCGAGCACTTTCGGGTTATCGATAAGGATTTCGCCGATGTCCTGACGTAAGTAATCGCGGAATGCGCGAACGa           >  1:1577269/1‑100 (MQ=255)
                                                                                    aaTGCAGCGATATACTGACGTGCCAGTTCGAGCACTTTCGGGTTATCGATAAGGATTTCGCCGATGTCCTGACGTAAGTAATCGCGGAATGCGCGAACGa           >  2:2908604/1‑100 (MQ=255)
                                                                                    aaTGCAGCGATATACTGACGTGCCAGTTCGAGCACTTTCGGGTTATCGATAAGGATTTCGCCGATGTCCTGACGTAAGTAATCGCGGAATGCGCGAACGa           <  1:219667/100‑1 (MQ=255)
                                                                                        cAGCGATATGCTGACGTGCCAGTTCGAGCACTTTCGGGTTATCAATAAGGATTTCGCCGATGTCCTGACGTAAGTAATCGCGGAATGCGCGAACGATTAc       >  1:2964020/1‑100 (MQ=255)
                                                                                           cGATATACTGACGTGCCAGTTCGAGCACTTTCGGGTTATCGATAAGGATTTCGCCGATGTCCTGACGTAAGTAATCGCGGAATGCGCGAACGATTACGtt    <  2:699628/100‑1 (MQ=255)
                                                                                           cGATATACTGACGTGCCAGTTCGAGCACTTTCGGGTTATCGATAAGGATTTCGCCGATGTCCTGACGTAAGTAATCGCGGAATGCGCGAACGATTACGtt    <  1:577926/100‑1 (MQ=255)
                                                                                             atatACTGACGTGCCAGTTCGAGCACTTTCGGGTTATCGATAAGGATTTCGCCGATGTCCTGACGTAAGTAATCGCGGAATGCGCGAACGATTACGTTGc  <  2:1801728/100‑1 (MQ=255)
                                                                                                 |                                                                                               
TCTGTGACTCGATCTGGTAGTGGCTGAACAGCGGGATCTCGCCGGTGTACAGTTTGA‑TTTTGCTGCTGAAATCCGGGCGACCTAATGCAGCGATATGCTGACGTGCCAGTTCGAGCACTTTCGGGTTATCGATAAGGATTTCGCCGATGTCCTGACGTAAGTAATCGCGGAATGCGCGAACGATTACGTTGC  >  NC_000913/1143545‑1143736

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑