Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 1,799,370 Δ1 bp 16.4% intergenic (‑100/+23) pheM ← / ← rplT phenylalanyl‑tRNA synthetase operon leader peptide/50S ribosomal subunit protein L20

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,799,3700A.16.4% 401.2 / 74.5 140intergenic (‑100/+23)pheM/rplTphenylalanyl‑tRNA synthetase operon leader peptide/50S ribosomal subunit protein L20
Reads supporting (aligned to +/- strand):  ref base A (52/64);  new base . (15/8);  total (67/73)
Fisher's exact test for biased strand distribution p-value = 1.09e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.06e-02

Only 100 of 145 total aligned reads displayed.

TGCTTGCGTTACCTTTTGGTACTCTTCAAAAGACCTTTATTGAAAAGGCTACGGCGATAAAAGTCAATGTTTTGATGGCGTTGAAACGAAAAGAGGGAGACTAGCTCCCTCTTTCAACTGGCTTATGCCAGAGCTGCTTTCGCTTTTTCAACCAGAGCGGTGAACGCTACTTTGTCGAATACTGCGATATCAGCCAGGA  >  NC_000913/1799271‑1799469
                                                                                                   |                                                                                                    
tgcttgcGTTACCTTTTGGTACTCTTCAAAAGACCTTTATTGAAAAGGCTACGGCGATAAAAGTCAATGTTTTGATGGCGTTGAAACGAAAAGAGGgaga                                                                                                      >  1:607939/1‑100 (MQ=255)
  cttgcGTTACCTTTTGGTACTCTTCAAAAGACCTTTATTGAAAAGGCTACGGCGATAAAAGTCAATGTTTTGATGGCGTTGAAACGAAAAGAGGGAGACt                                                                                                    <  2:2839516/100‑1 (MQ=255)
  cttgcGTTACCTTTTGGTACTCTTCAAAAGACCTTTATTGAAAAGGCTACGGCGATAAAAGTCAATGTTTTGATGGCGTTGAAACGAAAAGAGGGAGACt                                                                                                    <  2:1037972/100‑1 (MQ=255)
  cttgcGTTACCTGTTGGTACTCTTCAAAAGACCTTTATTGAAAAGGCTACGGCGATACCAGTCAATGTTTTGATGGCGTTGAAACGAAAAGAGGGCGACt                                                                                                    >  2:3679752/1‑100 (MQ=255)
       gTTACCTTTTGGTACTCTTCAAAAGACCTTTATTGAAAATGCTACGGCGATAAAAGTCAATGTTTTGATGGCGTTGAAACGAAAAGAGGGAGACTAGCTc                                                                                              >  1:1718827/1‑100 (MQ=255)
       gTTACCTTTTGGTACTCTTCAAAAGACCTTTATTGAAAAGGCTACGGCGATAAAAGTCAATGTTTTGATGGCGTTGAAACGAAACGAGGGAGACTAGCTc                                                                                              >  2:4343918/1‑100 (MQ=255)
       gTTACCTTTTGGTACTCTTCAAAAGACCTTTATTGAAAAGGCTACGGCGATAAAAGTCAATGTTTTGATGGCGTTGAAACGAAAAGAGGGAGACTAGCTc                                                                                              <  2:361823/100‑1 (MQ=255)
        ttACCTTTTGGTACTCTTCAAAAGACCTTTATTGAAAAGGCTACGGCGATAAAAGTCAATGTTTTGATGGCGTTGAAACGAAAAGAGGGAGACTAGCTcc                                                                                             <  2:953352/100‑1 (MQ=255)
        ttACCTTTTGGTACTCTTCAAAAGACCTTTATTGAAAAGGCTACGGCGATAAAAGTCAATGTTTTGATGGCGTTGAAACGAAAAGAGGGAGACTAGCTcc                                                                                             <  1:191575/100‑1 (MQ=255)
         tACCTTTTGGTACTCTTCAAAAGACCTTTATTGAAAAGGCTACGGCGATAAAAGTCAATGTTTTGATGGCGTTGAAACGAAAAGAGGGAGACTAGCTccc                                                                                            <  2:651913/100‑1 (MQ=255)
           ccTTTTGGTACTCTTCGAAAGAACTTTATTGACACCGCTACGGCGATAAAATTCAAGTTTTTGATGTCGTTGAAACGCAAAGTGGGAGACTAGCTCCctc                                                                                          >  1:3692274/1‑100 (MQ=255)
            cTTTTGGTACTCTTCAAAAGACCTTTATTGAAAAGGCTACGGCGATAAAAGTCAATGTTTTGATGGCGTTGAAACGAAAAGAGGGAGACTAGCTCCctct                                                                                         <  1:1030580/100‑1 (MQ=255)
            cTTTTGGTACTCTTCAAAAGACCTTTATTGAAAAGGCTACGGCGATAAAAGTCAATGTTTTGATGGCGTTGAAACGAAAAGAGGGAGCTAGTCTCCctct                                                                                         <  2:1313409/100‑1 (MQ=255)
             ttttGGTACTCTTCAAAAGACCTTTATTGAAAAGGCTACGGCGATAAAAGTCAATGTTTTGATGGCGTTGAAACGAAAAGAGGGAGACTAGCTCCCTCtt                                                                                        >  1:642767/1‑100 (MQ=255)
               ttGCTACTCTTTAAAGGACCTTTATTGAACAGGCTAAGCCGATAAAAGTCAAGTTTTTGATGTCGTTGAACCGACAAGTGTGAGACTAGCTCCCTCTTTc                                                                                      <  1:882757/100‑1 (MQ=255)
                tGGTACTCTTCAAAATACCTTTATTGAAAAGGCTACGGCGATAAAAGTCAATGTTTTGATGGCGTTGAAACGAAAAGAGGGAGACTAGCTCCCTCTTTCa                                                                                     <  2:4340622/100‑1 (MQ=255)
                tGGTACTCTTCAAAAGACCTTTATTGAAAGGGCTACGGCGATAAAAGTCAATGTTTTGATGGCGTTTAAACGAAAAGAGGGAGCTAGTCTCCCTCttttc                                                                                     <  1:2647386/100‑3 (MQ=38)
                tGGTACTCTTCAAAAGACCTTTATTGAAAAGGCTACGGCGATAAAAGTCAATGTTTTGATGGCGTTGAAACGAAAAGAGGGAGACTAGCTCCCTCTTTCa                                                                                     <  1:2025377/100‑1 (MQ=255)
                tGGTACTCTTCAAAAGACCTTTATTGAAAAGGCTACGGCGATAAAAGTCAATGTTTTGATGGCGTTGAAACGAAAAGAGGGAGACTAGCTCCCTCTTTCa                                                                                     >  2:720905/1‑100 (MQ=255)
                tGGTACTCTTCAAAAGACCTTTATTGAAAAGGCTACGGCGATAAAAGTCAATGTTTTGATGGCGTTGAAACGAAAAGAGGGAGCTAGTCTCCCTCttttc                                                                                     <  2:1079760/100‑3 (MQ=39)
                tGGTACTCTTCAAAAGACCTTTATTGAAAAGGCTACGGCGATAAAAGTCAATGTTTTGATGGCGTTGAAACGAAAAGAGGGAGCTAGTCTCCCTCttttc                                                                                     <  1:3348098/100‑3 (MQ=39)
                tGGTACTCTTCAAAAGACCTTTATTGAAAAGGCTACGGCGATAAAAGTCAATGTTTTGATGGCGTTGAAACGAAAAGAGGGAGCTAGTCTCCCTCttttc                                                                                     <  1:2296852/100‑3 (MQ=39)
                 ggTACTCTTCAAAAGACCTTTATTGAAAAGGCTACGGCGATAAAAGTCAATGTTTTGATGGCGTTGAAACGAAAAGAGGGAGACTAGCTCCCTCTTTCaa                                                                                    >  2:3627968/1‑100 (MQ=255)
                 ggTACTCTTCAAAAGACCTTTATTGAAAAGGCTACGGCGATAAAAGTCAATGTTTTGATGGCGTTGAAACGAAAAGAGGGAGCTAGTCTCCCTCttttcg                                                                                    <  1:171170/100‑4 (MQ=38)
                  gTACTCTTCAAAAGACCTTTATTGAAAAGGCTACGGCGATAAAAGTCAATGTTTTGATGGCGTTGAAACGAAAAGAGGGAGACTAGCTCCCTCTTTCa                                                                                     <  1:3322224/98‑1 (MQ=255)
                  gTACTCTTCAAAAGACCTTTATTGAAAAGGCTACGGCGATAAAAGTCAATGTTTTGATGGCGTTGAAACGAAAAGAGGGAGACTAGCTCCCTCTTTCAAc                                                                                   >  1:1743047/1‑100 (MQ=255)
                    aCTCTTCAAAAGACCTTTATTGAAAAGGCTACGGCGATAAAAGTCAATGTTTTGATGGCGTTGAAACGAAAAGAGGGAGACTAGCTCCCTCTTTCAACTg                                                                                 <  2:2197187/100‑1 (MQ=255)
                    aCTCTTCAAAAGACCTTTATTGAAAAGGCTACGGCGATAAAAGTCAATGTTTTGATGGCGTTGAAACGAAAAGAGGGAGCTAGTCTCCCTCttttcgttt                                                                                 <  1:3199021/100‑7 (MQ=38)
                     ctctTCAAAAGACCTTTATTGAAAAGGCTACGGCGATAAAAGTCAATGTTTTGATGGCGTTGAAACGAAAAGAGGGAGACTAGCTCCCTCTTTCAACTgg                                                                                >  1:896685/1‑100 (MQ=255)
                       ctTCAAAAGACCTTTATTGAAAAGGCTACGGCGATAAAAGTCAATGTTTTGATGGCGTTGAAACGAAAAGAGGGAGACTAGCTCCCTCTTTCAACTGGCt                                                                              >  2:2148508/1‑100 (MQ=255)
                        ttCAAAAGACCTTTATTGAAAAGGCTACGGCGATAAAAGTCAATGTTTTGATGGCGTTGAAACGAAAAGAGGGAGACTAGCTCCCTCTTTCAACTGGCtt                                                                             >  1:1704054/1‑100 (MQ=255)
                         tCAAAAGACCTTTATTGAAAAGGCTACGGCGATAAAAGTCAATGTTTTGATGGCGTTGAAACGAAAAGAGGGAGACTAGCTCCCTCTTTCAACTGGCTTa                                                                            >  2:1524889/1‑100 (MQ=255)
                          cAAAAGACCTTTATTGAAAAGGCTACGGCGATAAAAGTCAATGTTTTGATGGCGTTGAAACGAAAAGAGGGAGACTAGCTCCCTCTTTCAACTGGCTTAt                                                                           >  2:670482/1‑100 (MQ=255)
                             aaGACCTTTATTGAAAAGGCTACGGCGATAAAAGTCAATGTTTTGATGGCGTTGAAACGAAAAGAGGGAGACTAGCTCCCTCTTTCAACTGGCTTATGcc                                                                        <  1:3531092/100‑1 (MQ=255)
                               gACCTTTTTTGAAAAGGCTACGGCGATAAAAGGCAATGTTTTGATGGCGTTGAGCCGAAAAGAGGGAGACTAGCTCCCTCTTTCAACTGGCTTATGcc                                                                        <  1:3531166/98‑1 (MQ=255)
                                aCCTTTATTGAAAAGGCTACGGCGATAAAAGTCAATGTTTTGATGGCGTTGAAACGAAAAGAGGGAGACTAGCTCCCTCTTTCAACTGGCTTATGCCaga                                                                     <  2:1260433/100‑1 (MQ=255)
                                     tATTGAAAAGGCTACGGCGATAAAAGTCAATGTTTTGATGGCGTTGAAACGAAAAGAGGGAGACTAGCTCCCTCTTTCAACTGGCTTATGCCAGAgctgc                                                                <  1:4050524/100‑1 (MQ=255)
                                     tATTGAAAAGGCTACGGCGATAAAAGTCAATGTTTTGATGGCGTTGAAACGAAAAGAGGGAGACTAGCTCCCTCTTTCAACTGGCTTATGCCAGAgctgc                                                                >  1:2591261/1‑100 (MQ=255)
                                       ttGAAAAGGCTACGGCGATAAAAGTCAATGTTTTGATTGCGTTGAAACGAAAAGAGGGAGACTAGCTCCCTCTTTCAACTGGCTTATGCCAGAGCTGCtt                                                              >  1:692262/1‑100 (MQ=255)
                                       ttGAAAAGGCTACGGCGATAAAAGTCAATGTTTTGATGGCGTTGAAACGAAAAGAGGGAGACTAGCTCCCTCTTTCAACTGGCTTATGCCAGAGCTGCtt                                                              >  1:805029/1‑100 (MQ=255)
                                         gAAAAGGCTACGGCGATAAAAGTCAATGTTTTGATGACGTTGAAACGAAAAGAGGGAGACTAGCTCCCTCTTTCAACTGGCTTATGCCAGAGCTGCTTTc                                                            >  2:3107224/1‑100 (MQ=255)
                                          aaaaGGCTACGGCGATAAAAGTCAATGTTTTGATGGCGTTGAAACGAAAAGAGGGAGACTAGCTCCCTCTTTCAACTGGCTTATGCCAGAGCTGCTTTc                                                            <  2:903013/99‑1 (MQ=255)
                                            aaGGCTACGGCGATAAAAGTCAATGTTTTGATGGCGTTGAAACGAAAAGAGGGAGACTAGCTCCCTCTTTCAACTGGCTTATGCCAGAGCTGCTTTCGc                                                          >  1:4166632/1‑99 (MQ=255)
                                            aaGGCTACGGCGATAAAAGTCAATGTTTTGATGGCGTTGAAACGAAAAGAGGGAGACTAGCTCCCTCTTTCAACTGGCTTATGCCAGAGCTGCTTTCGCt                                                         <  2:617351/100‑1 (MQ=255)
                                             aGGCTACGGCGATAAAAGTCAATGTTTTTATGGCGTTGAAACGAAAAGAGGGAGACTAGCTCCCTCTTTCAACTGGCTTATGCCAGAGCTGCTTTCGCtt                                                        <  2:793680/100‑1 (MQ=255)
                                              ggCTACGGCGATAAAAGTCAATGTTTTGATGGCGTTGAAACGAAAAGAGGGAGACTAGCTCCCTCTTTCAACTGGCTTATGCCAGAGCTGCTTTCGCttt                                                       <  2:1743054/100‑1 (MQ=255)
                                               gCTACGGCGATAAAAGTCAATGTTTTGATGGCGTTGAAACGAAAAGAGGGAGACTAGCTCCCTCTTTCAACTGGCTTATGCCAGAGCTGCTTTCGCtttt                                                      <  1:445123/100‑1 (MQ=255)
                                               gCTACGGCGATAAAAGTCAATGTTTTGATGGCGTTGAAACGAAAAGAGGGAGACTAGCTCCCTCTTTCAACTGGCTTATGCCAGAGCTGCTTTCGCtttt                                                      <  1:1707325/100‑1 (MQ=255)
                                                cTACGGCGATAAGAGTCAATGTTTTGATGGCGTTGAAACGAAAAGAGGGAGACTAGCTCCCTCTTTCAACTGGCTTATGCCAGAGCTGCTTTCGCttttt                                                     <  1:3059789/100‑1 (MQ=255)
                                                cTACGGCGATAAAAGTCAATGTTTTGATGGCGTTGAAACGAAAAGAGGGAGACTAGCTCCCTCTTTCAACTGGCTTATGCCAGAGCTGCTTTCGCttttt                                                     <  2:2638333/100‑1 (MQ=255)
                                                cTACGGCGATAAAAGTCAATGTTTTGATGGCGTTGAAACGAAAAGAGGGAGACTAGCTCCCTCTTTCAACTGGCTTATGCCAGAGCTGCTTTCGCttttt                                                     <  2:1949259/100‑1 (MQ=255)
                                                  aCGGCGATAAAAGTCAATGTTTTGATGGCGTTGAAACGAAAAGAGGGAGACTAGCTCCCTCTTTCAACTGGCTTATGCCAGAGCTGCTTTCGCTTTTTCa                                                   <  1:3539049/100‑1 (MQ=255)
                                                  aCGGCGATAAAAGTCAATGTTTTGATGGCGTTGAAACGAAAAGAGGGAGACTAGCTCCCTCTTTCAACTGGCTTATGCCAGAGCTGCTTTCGCTTTTTCa                                                   <  1:1751335/100‑1 (MQ=255)
                                                     gCGATAAAAGTCAATGTTTTGATGGCGTTGAAACGAAAAGAGGGAGACTAGCTCCCTCTTTCAACTGGCTTATGCCAGAGCTGCTTTCGCTTTTTCAAcc                                                <  2:3319620/100‑1 (MQ=255)
                                                     gCGATAAAAGTCAATGTTTTGATGGCGTTGAAACGAAAAGAGGGAGACTAGCTCCCTCTTTCAACTGGCTTATGCCAGAGCTGCTTTCGCTTTTTCAAcc                                                <  2:4375531/100‑1 (MQ=255)
                                                     gCGATAAAAGTCAATGTTTTGATGGCGTTGAAACGAAAAGAGGGAGACTAGCTCCCTCTTTCAACTGGCTTATGCCAGAGCTGCTTTCGCTTTTTCAAcc                                                >  1:1040501/1‑100 (MQ=255)
                                                       gATAAAAGTCAATGTTTTGATGGCGTTGAAACGAAAAGAGGGAGACTAGCTCCCTCTTTCAACTGGCTTATGCCAGAGCTGCTTTCGCTTTTTCAACCag                                              <  2:3135711/100‑1 (MQ=255)
                                                            aaGTCAATGTTTTGATGGCGTTGAAACGAAAAGAGGGAGACTAGCTCCCTCTTTCAACTGGCTTATGCCAGAGCTGCTTTCGCTTTTTCAACCAGAGCgg                                         <  2:1369852/100‑1 (MQ=255)
                                                            aaGTCAATGTTTTGATGGCGTTGAAACGAAAAGAGGGAGACTAGCTCCCTCTTTCAACTGGCTTATGCCAGAGCTGCTTTCGCTTTTTCAACCAGAGCgg                                         >  1:2106546/1‑100 (MQ=255)
                                                              gTCAATGTTTTGATGGCGTTGAAACGAAAAGAGGGAGACTCGCTCCCTCTTTCAACTGGCTTATGCCAGAGCTGCTTTCGCTTTTTCAACCCGAGCGGTg                                       >  2:1110065/1‑100 (MQ=255)
                                                              gTCAATGTTTTGATGGCGTTGAAACGAAAAGAGGGAGACTAGCTCCCTCTTTCAACTGGCTTATGCCAGAGCTGCTTTCGCTTTTTCAACCAGAGCGGTg                                       >  1:4200116/1‑100 (MQ=255)
                                                              gTCAATGTTTTGATGGCGTTGAAACGAAAAGAGGGAGACTAGCTCCCTCTTTCAACTGGCTTATGCCAGAGCTGCTTTCGCTTTTTCAACCAGAGCGGTg                                       <  2:71731/100‑1 (MQ=255)
                                                                 aaTGTTTTGATGGCGTTGAAACGAAAAGAGGGAGACTAGCTCCCTCTTTCAACTGGCTTATGCCAGAGCTGCTTTCGCTTTTTCAACCAGAGCGGTGAAc                                    <  2:3031799/100‑1 (MQ=255)
                                                                     ttttGATGGCGTTGAAACGAAAAGAGGGAGACTAGCTCCCTCTTTCAACTGGCTTATGCCAGAGCTGCTTTCGCTTTTTCAACCAGAGCGGTGAACGCTa                                >  2:946259/1‑100 (MQ=255)
                                                                     ttttGATGGCGTTGAAACGAAAAGAGGGAGACTAGCTCCCTCTTTCAACTGGCTTATGCCAGAGCTGCTTTCGCTTTTTCAACCAGAGCGGTGAACGCTa                                >  1:2943388/1‑100 (MQ=255)
                                                                       ttGATGGCGTTGAAACGAAAAGAGGGAGACTAGCTCCCTCTTTCAACTGGCTTATGCCAGAGCTGCTTTCGCTTTTTCAACCAGAGCGGTGAACGCTACt                              >  2:2951693/1‑100 (MQ=255)
                                                                            ggCGTTGAAACGAAAAGAGGGAGACTAGCTCCCTCTTTCAACTGGCTTATGCCAGAGCTGCTTTCGCTTTTTCAACCAGAGCGGTGAACGCTACTTTGTc                         <  2:2701852/100‑1 (MQ=255)
                                                                            ggCGTTGAAACGAAAAGAGGGAGACTAGCGTCCTCTTTCAACTGGCTTATGCCAGAGCTGCTTTCGCTTTTTCAACCAGAGCGGTGAACGCTACTTTGTc                         <  1:2651536/100‑1 (MQ=255)
                                                                             gCGTTGAAACGAAAAGAGGGAGACTAGCTCCCTCTTTCAACTGGCTTATGCCAGAGCTGCTTTCGCTTTTTCAACCAGAGCGGTGAACGCTACTTTGTCg                        <  2:4373638/100‑1 (MQ=255)
                                                                                  gAAACGAAAAGAGGGAGACTAGCTCCCTCTTTCAACTGGCTTATGCCAGAGCTGCTTTCGCTTTTTCAACCAGAGCGGTGAACGCTACTTTGTCGAATAc                   <  1:4158549/100‑1 (MQ=255)
                                                                                  gAAACGAAAAGAGGGAGACTAGCTCCCTCTTTCAACTGGCTTATGCCAGAGCTGCTTTCGCTTTTTCAACCAGAGCGGTGAACGCTACTTTGTCGAATAc                   >  1:666347/1‑100 (MQ=255)
                                                                                   aaaCGAAAAGAGGGAGACTAGCTCCCGCTTTCAACTGGCTTATGCCAGAGCTGCTTTCGCTTTTTCAACCAGAGCGGTGAACGCTACTTTGTCGAATACt                  >  1:3745814/1‑100 (MQ=255)
                                                                                    agttgaaaGAGGGAGCTAGTCTCCCTCTTTCAACTGGCTTATGCCAGAGCTGCTTTCGCTTTTTCAACCAGAGCGGTGAACGCTACTTTGTCGAATACTg                 >  2:3270543/6‑100 (MQ=38)
                                                                                    aaCGAAAAGAGGGAGACTAGCTCCCTCTTTCAACTGGCTTATGCCAGAGCTGCTTTCGCTTTTTCAACCAGAGCGGTGAACGCTACTTTGTCGAATACt                  >  1:4047313/1‑99 (MQ=255)
                                                                                    aaCGAAAAGAGGGAGACTAGCTCCCTCTTTCAACTGGCTTATGCCAGAGCTGCTTTCGCTTTTTCAACCAGAGCGGTGAACGCTACTTTGTCGAATACTg                 >  1:211463/1‑100 (MQ=255)
                                                                                     gttgaaaGAGGGAGCTAGTCTCCCTCTTTCAACTGGCTTATGCCAGAGCTGCTTTCGCTTTTTCAACCAGAGCGGTGAACGCTACTTTGTCGAATACTGc                >  2:3705783/5‑100 (MQ=38)
                                                                                       tgaaaGCGGGAGCTAGTCTCCCTCTTTCAACTGGCTTATGCCAGAGCTGCTTTCGCTTTTTCAACCCGAGCGGTGAACGCTACTTTGTCGAATACTGc                >  1:983652/3‑98 (MQ=255)
                                                                                       tgaaaGAGGGAGCTAGTCTCCCTCTTTCAACTGGCTTATGCCAGAGCTGCTTTCGCTTTTTCAACCAGAGCGGTGAACGCTACTTTGTCGAATACTGCg               >  1:2021352/3‑99 (MQ=38)
                                                                                       tgaaaGAGGGAGCTAGTCTCCCTCTTTCAACTGGCTTATGCCAGAGCTGCTTTCGCTTTTTCAACCAGAGCGGTGAACGCTACTTTGTCGAATACTGCGa              >  2:1554426/3‑100 (MQ=39)
                                                                                       tgaaaGAGGGAGCTAGTCTCCCTCTTTCAACTGGCTTATGCCAGAGCTGCTTTCGCTTTTTCAACCAGAGCGGTGAACGCTACTTTGTCGAATACTGCGa              >  2:908921/3‑100 (MQ=39)
                                                                                       tgaaaGAGGGAGCTAGTCTCCCTCTTTCAACTGGCTTATGCCAGAGCTGCTTTCGCGTTTTCAACCAGAGCGGTGAACGCTACTTTGTCGAATACTGCg               >  2:1086674/3‑99 (MQ=38)
                                                                                       gAAAAGAGGGAGACTAGCTCCCTCTTTCAACTGGCTTATGCCAGAGCTGCTTTCGCTTTTTCAACCAGAGCGGTGAACGCTACTTTGTCGAATACTGCGa              <  1:1751098/100‑1 (MQ=255)
                                                                                        gaaaGAGGGAGCTAGTCTCCCTCTTTCAACTGGCTTATGCCAGAGCTGCTTTCGCTTTTTCAACCAGAGCGGTGAACGCTAGTTTGTCGAATACTGCGat             >  2:2533580/2‑100 (MQ=38)
                                                                                        gaaaGAGGGAGCTAGTCTCCCTCTTTCAACTGGCTTATGCCAGAGCTGCTTTCGCTTTTTCAACCAGAGCGGTGAACGCTACTTTGTCGAATACTGCGat             >  2:2296973/2‑100 (MQ=39)
                                                                                         aaaGAGGGAGACTAGCTCCCTCTTTCAACTGGCTTATGCCAGAGCTGCTTTCGCTTTTTCAACCAGAGCGGTGAACGCTACTTTGTCGAATACTGCGata            <  2:1675836/100‑1 (MQ=255)
                                                                                         aaaGAGGGAGCTAGTCTCCCTCTTTCAACTGGCTTATGCCAGAGCTGCTTTCGCTTTTTCCACCAGAGCGGTGAACGCTACTTTGTCGAATACTGCtata            >  1:1163415/1‑100 (MQ=255)
                                                                                         aaaGAGGGAGCTAGTCTCCCTCTTTCAACTGGCTTATGCCAGAGCTGCTTTCGCTTTTTCAACCAGAGCGGTGAACGCTACTTTGTCGAATACTGCGata            >  2:876579/1‑100 (MQ=255)
                                                                                         aaaGAGGGAGCTAGTCTCCCTCTTTCAACTGGCTTATGCCAGAGCTGCTTTCGCTTTTTCAACCAGAGCGGTGAACGCTACTTTGTCGAATACTGCGata            >  2:2932032/1‑100 (MQ=255)
                                                                                          aaGAGGGAGACTAGCTCCCTCTTTCAACTGGCTTATGCCAGAGCTGCTTTCGCTTTTTCAACCAGAGCGGTGAACGCTACTTTGTCGAATACTGCGatat           <  2:2106553/100‑1 (MQ=255)
                                                                                           agagGGAGACTAGCTCCCTCTTTCAACTGGCTTATGCCAGAGCTGCTTTCGCTTTTTCAACCAGAGCGGTGAACGCTACTTTGTCGAATACTGCGATATc          <  2:1095835/100‑1 (MQ=255)
                                                                                            gagGGAGACTAGCTCCCTCTTTCAACTGGCTTATGCCAGAGCTGCTTTCGCTTTTTCAACCAGAGCGGTGAACGCTACTTTGTCGAATACTGCGATATCa         <  1:3200788/100‑1 (MQ=255)
                                                                                            gagGGAGACTAGCTCCCTCTTTCAACTGGCTTATGCCAGAGCTGCTTTCGCTTTTTCAACCAGAGCGGTGAACGCTACTTTGTCGAATACTGCGATATCa         <  1:1957624/100‑1 (MQ=255)
                                                                                            gagGGAGACTAGCTCCCTCTTTCAACTGGCTTATGCCAGAGCTGCTTTCGCTTTTTCAACCAGAGCGGTGAACGCTACTTTGTCGAATACTGCGATATCa         >  2:1498825/1‑100 (MQ=255)
                                                                                             agGGAGACTAGCTCCCTCTTTCAACTGGCTTATGCCAGAGCTGCTTTCGCTTTTTCAACCAGAGCGGTGAACGCTACTTTGTCGAATACTGCGATATCAg        >  1:1581292/1‑100 (MQ=255)
                                                                                              gggAGACTAGCTCCCTCTTTCAACTGGCTTATGCCAGAGCTGCTTTCGCTTTTTCAACCAGAGCGGTGAACGCTACTTTGTCGAATACTGCGATATCAGc       >  1:4304995/1‑100 (MQ=255)
                                                                                              gggAGACTAGCTCCCTCTTTCAACTGGCTTATGCCAGAGCTGCTTTCGCTTTTTCAACCAGAGCGGTGAACGCTACTTTGTCGAATACTGCGATATCAGc       <  1:1470855/100‑1 (MQ=255)
                                                                                              gggAGACTAGCTCCCTCTTTCAACTGGCTTATGCCAGAGCTGCTTTCGCTTTTTCAACCAGAGCGGTGAACGCTACTTTGTCGAATACTGCGATATCAGc       >  2:239745/1‑100 (MQ=255)
                                                                                                 agaCTAGCTCCCTCTTTCAACTTGCTTATGCCAGAGCTGCTTTCGCTTTTTCAACCAGATCGGTGAACGCTACTTTGTCGAATACTGCGATATCAGcc      <  1:2516040/98‑1 (MQ=255)
                                                                                                 agaCTAGCTCCCTCTTTCAACTGGCTTATGCCAGAGCTGCTTTCGCTTTTTCAACCAGAGCGGTGAACGCTACTTTGTCGAATACTGCGATATCAGCCAg    <  2:3984990/100‑1 (MQ=255)
                                                                                                   aCTAGCTCCCTCTTTCAACTGGCTTATGCCAGAGCTGCTTTCGCTTTTTCAACCAGAGCGGTGAACGCTACTTTGTCGAATACTGCGATATCAGCCAGGa  >  2:1269669/1‑100 (MQ=255)
                                                                                                   |                                                                                                    
TGCTTGCGTTACCTTTTGGTACTCTTCAAAAGACCTTTATTGAAAAGGCTACGGCGATAAAAGTCAATGTTTTGATGGCGTTGAAACGAAAAGAGGGAGACTAGCTCCCTCTTTCAACTGGCTTATGCCAGAGCTGCTTTCGCTTTTTCAACCAGAGCGGTGAACGCTACTTTGTCGAATACTGCGATATCAGCCAGGA  >  NC_000913/1799271‑1799469

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: