Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 3,570,714:1 +T 15.2% coding (606/1974 nt) glgX ← glycogen debranching enzyme

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,570,7141.T15.2% 644.0 / 130.2 204coding (606/1974 nt)glgXglycogen debranching enzyme
Reads supporting (aligned to +/- strand):  ref base . (91/82);  new base T (18/13);  total (109/95)
Fisher's exact test for biased strand distribution p-value = 6.96e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.26e-01

Only 100 of 215 total aligned reads displayed.

GCAGGCATACGCCGGATGCAGCGCAAACATCGCCACCGGGTTGTAACCCCAGTAGTTACTTAGCCCCATGCGTTGCAGACGTGGTTCACTGGCAAACTGCGCCACTGGCAGCAGTTCCAGCGCGGTAATGCCCAATTGTTTCAAATAGTTGATCATCACCGGATGCCCGAGGGCTTTATAAGTGCCACGGATCTCGACC  >  NC_000913/3570615‑3570813
                                                                                                    |                                                                                                   
 naGGCATACGCCGGATGCAGCGCAAACATCGCCACCGGGTTGTAACCCCAGTAGTTACTTAGCCACATGCGTTGCAGACGTGGTTCACTGGCAAACTgcg                                                                                                    >  2:1385607/2‑100 (MQ=255)
 cAGGCATACGCCGGATGCAGCGCAAACATCGCCACCGGGTTGTAACCCCAGTAGTTACTTAGCCCCATGCGTTGCAGACGTGGTTCACTGGCAAACTgcg                                                                                                    <  1:947415/100‑1 (MQ=255)
  aGGCATACGCCGGATGCAGCGCAAACATCGCCACCGGGTTGTAACCCCAGTAGTAACTTAGCCCCATGCGTTGCAGACGTGGTTCACTGGGAAGCTgcgc                                                                                                   <  1:2806638/100‑1 (MQ=255)
   ggCATACGCCGGATGCAGCGCAAACATCGCCACCGGGTTGTAACCCCAGTAGTTACTTAGCCCCATGCGTTGCAGACGTGGTTCACTGGCAAACTGCGcc                                                                                                  <  2:203481/100‑1 (MQ=255)
     cATACGCCGGATGCAGCGCAAACATCGCCACCGGGTTGTAACCCCAGTAGTTACTTAGCCCCATGCGTTGCAGACGTGGTTCACTGGCAAACTGCGcc                                                                                                  >  1:4241219/1‑98 (MQ=255)
       tACGCCGGATGCAGCGCAAACATCGCCACCGGGTTGTAACCCCAGTAGTTACTTAGCCCCATGCGTTGCAGACGTGGTTCACTGGCAAACTGCGCCACTg                                                                                              <  2:932113/100‑1 (MQ=255)
        aCGCCGGATGCAGCGCAAACATCGCCACCGGGTTGTAACCCCAGTAGTTACTTAGCCCCATGCGTTGCAGACGTGGTTCACTGGCAAACTGCGCCACTgg                                                                                             >  2:1595342/1‑100 (MQ=255)
        aCGCCGGATGCAGCGCAAACATCGCCACCGGGTTGTAACCCCAGTAGTTACTTAGCCCCATGCGTTGCAGACGTGGTTCACTGGCAAACTGCGCCACTgg                                                                                             <  1:1221398/100‑1 (MQ=255)
         cGCCGGATGCAGCGCAAACATCGCCACCTGGTTGTAACCCCATTAGTTACTTAGCCCCATGCGTTGCAGACGTGGTTCACTGGCAAACTGCGCCACTGgc                                                                                            <  1:760565/100‑1 (MQ=255)
         cGCCGGATGCAGCGCAAACATCGCCACCGGGTTGTAACCCCAGTAGTGACTTAGCCCCATGCGTTGCAGACGTGGTTCACTGGCAAACTGCGCCACTGgc                                                                                            <  2:3446465/100‑1 (MQ=255)
           ccGGATGCAGCGCAAACATCGCCACCGGGTTGTAACCCCAGTAGTTACTTAGCCCCATGCGTTGCAGACGTGGTTCACTGGCAAACTGCGCCACTGgcag                                                                                          <  1:4398133/100‑1 (MQ=255)
            cGGATGCAGCGCAAACATCGCCACCGGGTTGTAACCCCAGTAGTTACTTAGCCCCATGCGTTGCAGACGTGGTTCACTGGCAAACTGCGCCACTGgcagc                                                                                         <  2:3947653/100‑1 (MQ=255)
              gATGCAGCGCAAACATCGCCACCGGGTTGTAACCCCAGTAGTTACTTAGCCCCATGCGTTGCAGACGTGGTTCACTGGCAAACTGCGCCACTGGcagcag                                                                                       <  1:258381/100‑1 (MQ=255)
               aTGCAGCGCAAACATCGCCACCGGGTTGTAACCCCAGTAGTTACTTAGCCCCATGCGTTGCAGACGTGGTTCACTGGCAAACTGCGCCACTGGCAGCAGt                                                                                      <  1:1035815/100‑1 (MQ=255)
               aTGCAGCGCAAACATCGCCACCGGGTTGTAACCCCAGTAGTTACTTAGCCCCATGCGTTGCAGACGTGGTTCACTGGCAAACTGCGCCACTGGCAGCAGt                                                                                      <  2:2903391/100‑1 (MQ=255)
                tGCAGCGCAAACATCCCCACCGGGTTGTAACCCCAGTAGTTACTTAGCCCCATGCGTTGCAGACGTGGTTCACTGGCAAACTGCTGCCAGTGGCGCAGtt                                                                                     <  1:510157/100‑1 (MQ=255)
                  cAGCGCAAACATCGCCACCGGGTTGTAACCCCAGTAGTTACTTAGCCCCATGCGTTGCAGACGTGGTTCACTGGCAAACTGCTGCCAGTGGCGCAGtttg                                                                                   <  1:3939384/100‑3 (MQ=255)
                  cAGCGCAAACATCGCCACCGGGTTGTAACCCCAGTAGTTACTTAGCCCCATGCGTTGCAGACGTGGTTCACTGGCAAACTGCTGCCAGTGGCGCAGtttg                                                                                   <  2:1871197/100‑3 (MQ=255)
                  cAGCGCAAACATCGCCACCGGGTTGTAACCCCAGTAGTTACTTAGCCCCATGCGTTGCAGACGTGGTTCACTGGCAAACTGCGCCACTGGCAGCAGTTcc                                                                                   >  1:2826448/1‑100 (MQ=255)
                   aGCGCAAACATCGCCACCGGGTTGTAACCCCAGTAGTTACTTAGCCCCATGCGTTGCAGACGTGGTTCACTGGCAAACTGCGCCACTGGCAGCAGTTCCa                                                                                  >  2:102483/1‑100 (MQ=255)
                    gcgcAAACATCGCCACCGGGTTGTAACCCCAGTAGTTACTTAGCCCCATGCGTTGCAGACGTGGTTTACTGGCAAACTGCTGCCAGTGGCGCAGtttgcc                                                                                 <  2:1559075/100‑5 (MQ=38)
                    gcgcAAACATCGCCACCGGGTTGTAACCCCAGTAGTTACTTAGCCCCATGCGTTGCAGACGTGGTTCACTGGCAAACTGCTGCCAGTGGCGCAGtttgcc                                                                                 <  2:3119347/100‑5 (MQ=38)
                    gcgcAAACATCGCCACCGGGTTGTAACCCCAGTAGTTACTTAGCCCCATGCGTTGCAGACGTGGTTCACTGGCAAACTGCTGCCAGTGGCGCAGtttgcc                                                                                 <  1:787382/100‑5 (MQ=38)
                    acgcAAACATCGCCACCGGGTTGTAACCCCAGAAGTTACTTAGACCCATGCGTTGCAGACGAAGTTCAATGGCAAACTACACCACTGGCAGCAGTTCCa                                                                                  >  1:1383185/2‑99 (MQ=255)
                      gcAAACATCGCCACCGGGTTGTAACCCCAGTAGTTACTTAGCCCCATGCGTTGCAGACGTGGTTCACTGGCAAACTGCGCCACTGGCAGCAGTTCCAgcg                                                                               >  2:3361574/1‑100 (MQ=255)
                         aacaacGCCACCAGGTTGTAAACCCAGTAGTTACTTAGCCCCATGCGTTGCAGACTTGGTTCACTGGCAAACTGCTGCCAGTGGCGCAGtttgcca                                                                                <  1:370350/96‑6 (MQ=25)
                         aaCATCGCCACCGGGTTGTAACCCCAGTAGTTACTTAGCCCCATGCGTTGCAGACGTGGTTCACTGGCAAACTGCGCCACTGGCAGCAGTTCCAGCGCgg                                                                            <  1:4145089/100‑1 (MQ=255)
                              cGCCACCGGGTTGTAACCCCAGTAGTTACTTAGCCCCATGCGTTGCAGACGTGGTTCACTGGCAACCTGCGCCACCGGCCGCAGTCCCAGCGCGGt                                                                           >  1:3373388/1‑96 (MQ=255)
                               gCCACCGGGTTGTAACCCCAGTAGTTACTTAGCCCCATGCGTTGCAGACGTGGTTCACTGGCAAACTGCGCCACTGGCAGCAGTTCCAGCGCGGTAATGc                                                                      >  1:2422704/1‑100 (MQ=255)
                                 cACCGGGTTGTAACCCCAGTAGTTACTTAGCCCCATGCGTTGCAGACGTGGTTCACTGGCAAACTGCGCCACTGGCAGCAGTTCCAGCGCGGTAATGccc                                                                    <  2:1736133/100‑1 (MQ=255)
                                 cACCGGGTTGTAACCCCAGTAGTTACTTAGCCCCATGCGTTGCAGACGTGGTTCACTGGCAAACTGCGCCACTGGCAGCAGTTCCAGCGCGGTAATGccc                                                                    <  2:3376000/100‑1 (MQ=255)
                                 cACCGGGTTGTAACCCCAGTAGTTACTTAGCCCCATGCGTTGCAGACGTGGTTCACTGGAAAACTGCGCCACTGGCAGCAGTTCCAGCGCGGTAATGccc                                                                    >  1:3349226/1‑100 (MQ=255)
                                  aCCGGGTTGTAACCCCAGTAGTTACTTAGCCCCATGCGTTGCAGACGTGGTTCACTGGCAAACTGCGCCACTGGCAGCAGTTCCAGCGCGGTAATGCCCa                                                                   >  2:602961/1‑100 (MQ=255)
                                   ccGGGTTGTAACCCCAGTAGTTACTTAGCCCCATGCGTTGCAGACGTGGTTCACTGGCAAACTGCGCCACTGGCAGCAGTTCCAGCGCGGTAATGCCCaa                                                                  >  1:1361683/1‑100 (MQ=255)
                                   ccGGGTTGTAACCCCAGTAGTTACTTAGCCCCATGCGTTGCAGACGTGGTTCACTGGCAAACGGCGCCACTGGCAGCAGTTCCAGCGCGGTAATGCCCaa                                                                  >  1:2965352/1‑100 (MQ=255)
                                     gggTTGTAACCCCAGTAGTTACTTAGCCCCATGCGTTGCAGACGTGGTTCACTGGCAAACTGCGCCACTGGCAGCAGTTCCAGCGCGGTAATGCCCAAtt                                                                >  2:4087954/1‑100 (MQ=255)
                                      ggTTGTAACCCCAGTAGTTACTTAGCCCCATGCGTTGCAGACGTGGTTCACTGGCAAACTGCGCCACTGGCAGCAGTTCCAGCGCGGTAATGCCCAATTg                                                               <  1:1455584/100‑1 (MQ=255)
                                         tGTAACCCCAGTAGTTACTTAGCCCCATGCGTTGCAGACGTGGTTCACTGGCAAACTGCGCCACTGGCAGCAGTTCCAGCGCGGTAATGCCCAATTGttt                                                            <  1:3629738/100‑1 (MQ=255)
                                         tGTAACCCCAGTAGTTACTTAGCCCCATGCGTTGCAGACGTGGTTCACTGGCAAACTGCGCCACTGGCAGCAGTTCCAGCGCGGTAATGCCCAATTGttt                                                            <  2:2331905/100‑1 (MQ=255)
                                         tGTAACCCCAGTAGTTACTTAGCCCCATGCGTTGCAGACGTGGTTCACTGGCAAACTGCGCCACTGGCAGCAGTTCCAGCGCGGTAATGCCCAATTGttt                                                            <  1:1739435/100‑1 (MQ=255)
                                           tAACCCCAGTAGTTACTTAGCCCCATGCGTTGCAGACGTGGTTCACTGGCAAACTGCGCCACTGGCAGCAGTTCCAGCGCGGTAATGCCCAATTGTTTCa                                                          <  1:2742487/100‑1 (MQ=255)
                                           tAACCCCAGTAGTTACTTAGCCCCATGCGTTGCAGACGTGGTTCACTGGCAAACTGCGCCACTGGCAGCAGTTCCAGCGCGGTAATGCCCAATTGTTTCa                                                          >  1:1325816/1‑100 (MQ=255)
                                           tAACCCCAGTAGTTACTTAGCCCCATGCGTTGCAGACGTGGTTCACTGGCAAACTGCGCCACTGGCAGCAGTTCCAGCGCGGTAATGCCCAATTGTTTCa                                                          <  1:1548216/100‑1 (MQ=255)
                                           tAACCCCAGTAGTTACTTAGCCCCATGCGTTGCAGACGTGGTTCACTGGCAAACTGCGCCACTGGCAGCAGTTCCAGCGCGGTAATGCCCAATTGTTTCa                                                          >  2:404579/1‑100 (MQ=255)
                                              ccccAGTAGTTACTTAGCCCCATGCGTTGCAGACGTGGTTCACTGGCAAACTGCGCCACTGGCAGCAGTTCCAGCGCGGTAATGCCCAATTGTTTCaact                                                       >  2:180854/1‑98 (MQ=255)
                                                ccAGTAGTTACTTAGCCCCATGCGTTGCAGACGTGGTTCACTGGCAAACTGCGCCACTGTTAGCAGTTCAAACTCGGTAATGCCCAATTGTTTCAAATa                                                      >  1:2151051/1‑99 (MQ=255)
                                                 cAGTAGTTACTTAGCCCCATGCGTGGCAGACGTGGTTCACTGGCAAACTGCGCCACTGGCAGCAGTTCCAGCGCGGTAATGCCCAATTGTTTCAAATAGt                                                    <  1:1481326/100‑1 (MQ=255)
                                                 cAGTAGTTACTTAGCCCCATGCGATCCAGACGTGGTTCACTGGCAAACTGCGCCACTGTCAGCAGTTCCAGCGCGGTAATGCCCAATTGTTTCAAATAGt                                                    <  1:1211299/100‑1 (MQ=255)
                                                  agtagtTACTTAGCCCCATGCGTTGCAGACGTGGTTCACTGGCAAACTGCGCCACTGGCAGCAGTTCCAGCGCGGTAATGCCCAATTGTTTCAAATAGtt                                                   <  1:2225319/100‑1 (MQ=255)
                                                   gtagtTACTTAGCCCCATGCGTTGCAGACGTGGTTCACTGGCAAACTGCGCCACTGGCAGCAGTTCCAGCGCGGTAATGCCCAATTGTTTCAAATAGTTg                                                  <  2:1219801/100‑1 (MQ=255)
                                                   gtagtTACTTAGCCCCATGCGTTGCAGACGTGGTTCACTGGCAAACTGCGCCACTGGCAGCAGTTCCAGCGCGGTAATGCCCAATTGTTTCAAATAGTTg                                                  >  2:886613/1‑100 (MQ=255)
                                                     agtTACTTAGCCCCATGCGTTGCAGACGTGGTTCACTGGCAAACTGCGCCACTGGCAGCAGTTCCAGCGCGGTAATGCCCAATTGTTTCAAATAGTTGat                                                <  1:2090157/100‑1 (MQ=255)
                                                      gtTACTTAGCCCCATGCGTTGCAGACGTGGTTCACTGGCAAACTGCGCCACTGGCAGCAGTTCCAGCGCGGTAATGCCCAATTGTTTCAAATAGTTGatc                                               >  1:4165708/1‑100 (MQ=255)
                                                       ttACTTAGCCCCATGCGTTGCAGACGTGGTTCACTGGCAAACTGCGCCACTGGCAGCAGTTCCAGCGCGGTAATGCCCAATTGTTTCAAATAGTTGatca                                              <  2:2518517/100‑1 (MQ=255)
                                                         acatAGCCCCATGCGTGGCAGACGTTGTTGAGTGGCAAACTGCGCCACTGGCAGCAGGTCCAGCGCGGTAATGCCCAATTATGTCAAATAGTTGat                                                <  1:3534850/93‑1 (MQ=255)
                                                         aCTTAGCCCCATGCGTTGCAGACGTGGTTCACTGGCAAACTGCGCCACTGGCAGCAGTTCCAGTGCGGTAATGCCCAATTGTTTCAAATAGTTGatcatc                                            >  2:4200532/1‑100 (MQ=255)
                                                         aCTTAGCCCCATGCGTTGCAGACGTGGTTCACTGGCAAACTGCGCCACTGGCAGCAGTTCCAGCGCGGTAATGCCCAATTGTTTCAAATAGTTGatcatc                                            >  2:38655/1‑100 (MQ=255)
                                                         aCTTAGCCCCATGCGTTGCAGACGTGGTTCACTGGCAAACTACGCCACTGGCAGCAGTTCCAGCGCGGTAATGCCCAATTGTTTCAAATAGTTGat                                                <  1:4377934/96‑1 (MQ=255)
                                                          cTTAGCCCCATGCGTTGCAGACGTGGTTCACTGGCAAACTGCGCCACTGGCAGCAGTTCCAGCGCGGTAATGCCCAATTGTTTCAAATAGTTGAtcatca                                           >  1:293302/1‑100 (MQ=255)
                                                            tAGCCCCATGCGTTGCAGACGTGGTTCACTGGCAAACTGCGCCACTGGCAGCAGTTCCAGCGCGGTAATGCCCAATTGTTTCAAATAGTTGATCATCAcc                                         >  2:3589980/1‑100 (MQ=255)
                                                             aGCCCCATGCGTTGCAGACGTGGTTCACTGGCAAACTGCGCCACTGGCAGCAGTTCCAGCGCGGTAATGCCCAATTGTTTCAAATAGTTGATCATCACCg                                        <  2:579561/100‑1 (MQ=255)
                                                             aGCCCCATGCGTTGCAGACGTGGTTCACTGGCAAACTGCGCCACTGGCAGCAGTTCCAGCGCGGTAATGCCCAATTGTTTCAAATAGTTGATCATCACCg                                        <  1:1149256/100‑1 (MQ=255)
                                                             aGCCCCATGCGTTGCAGACGTGGTTCACTGGCAAACTGCGCCACTGGCAGCAGTTCCAGCGCGGTAATGCCCAATTGTTTCAAATAGTTGATCATCACCg                                        >  2:832057/1‑100 (MQ=255)
                                                             aGCCCCATGCGTTGCAGACGTGGTTCACTGGCAAACTGCGCCACTGGCAGCAGTTCCAGCGCGGTAATGCCCAATTGTTTCAAATAGTTGATCATCACCg                                        <  1:404578/100‑1 (MQ=255)
                                                              gCCCCATGCGTTGCAGACGTGGTTCACTGGCAAACTGCGCCACTGGCAGCAGTTCCAGCGCGGTAATGCCCAATTGTTTCAAATAGTTGATCATCACCgg                                       >  1:3649268/1‑100 (MQ=255)
                                                              gCCCCATGCGTTGCAGACGTGGTTCACTGGCAAACTGCGCCACTGGCAGCAGTTCCAGCGCGGTAATGCCCAATTGTTTCAAATAGTTGATCATCACCgg                                       >  1:3411221/1‑100 (MQ=255)
                                                                nccATGCGTTGCAGACGTGGTTCACTGGCAAACTGCGCCACTGGCAGCAGTTCCAGCGCGGTAATGCCCAATTGTTTCAAATAGTTGATCATCACCGGAt                                     >  1:4212501/2‑100 (MQ=255)
                                                                  cATGCGTTGCAGACGTGGTTCACTGGCAAGCTGCGGCACTGGCAGCAGTTCCAGCGCGGTAATGCCCAATTGTTTCAAATAGTTGATCATCACCGGATGc                                   >  2:3028307/1‑100 (MQ=255)
                                                                  cATGCGTTGCAGACGTGGTTCACTGGCAAACTGCGCCACTGGCAGCAGTTCCAGCGCGGTAATGCCCAATTGTTTCAAATAGTTGATCATCACCGGATGc                                   <  2:1484707/100‑1 (MQ=255)
                                                                  cATGCGTTGCAGACGTGGTTCACTGGCAAACTGCGCCACTGGCAGCAGTTCCAGCGCGGTAATGCCCAATTGTTTCAAATAGTTGATCATCACCGGATGc                                   >  2:3258495/1‑100 (MQ=255)
                                                                  cATGCGTTGCAGACGTGGTTCACTGGCAAACTGCGCCACTGGCAGCAGTTCCAGCGCGGTAATGCCCAATTGTTTCAAATAGTTGATCATCACCGGATGc                                   >  2:2646709/1‑100 (MQ=255)
                                                                      cGTTGCAGACGTGGTTCACTGGCAAACTGCGCCACTGGCAGCAGTTCCAGCGCGGTAATGCCCAATTGTTTCAAATAGTTGATCATCACCGGATGCCCGa                               >  2:3322524/1‑100 (MQ=255)
                                                                          gCAGACGTGGTTCACTGGCAAACTGCGCCACTGGCAGCAGTTCCAGCGCGGTAATGCCCAATTGTTTCAAATAGTTGATCATCACCGGATGCCCGAGGGc                           >  2:3333186/1‑100 (MQ=255)
                                                                            aGACGTGGTTCACTGGCAAACTGCGCCACTGGCAGCAGTTCCAGCGCGGTAATGCCCAATTGTTTCAAATAGTTGATCATCACCGGATGCCCGAGGACtt                         <  1:4066870/100‑1 (MQ=255)
                                                                              aCGTGGTTCACTGGCAAACTGCGCCACTGGCAGCAGTTCCAGCGCGGTAATGCCCAATTGTTTCAAATAGTTGATCATCACCGGATGCCCGAGGGCTTta                       <  2:2793517/100‑1 (MQ=255)
                                                                                gTGGTTCACTGGCAAACTGCGCCACTGGCAGCAGTTCCAGTGCGGTAATGCCCAATTGTTTCAAATAGTTGATCATCACCGGATGCCCGAGGGCTTtata                     >  2:2410778/1‑100 (MQ=255)
                                                                                gTGGTTCACTGGCAAACTGCGCCACTGGCAGCAGTTCCAGCGCGGTAATGCCCAATTGTTTCAAATAGTTGATCATCACCGGATGCCCGAGGGCTTtata                     <  2:376878/100‑1 (MQ=255)
                                                                                  ggTTCACTGGCAAACTGCGCCACTGGCAGCAGTTCCAGCGCGGTAATGCCCAATTGTTTCAAATAGTTGATCATCACCGGATGCCCGAGGGCTTTATAAg                   >  1:2395027/1‑100 (MQ=255)
                                                                                  ggTTCACTGGCAAACTGCGCCACTGGCAGCAGTTCCAGCGCGGTAATGCCCAATTGTTTCAAATAGTTGATCATCACCGGATGCCCGAGGGCTTTATAAg                   >  2:1308916/1‑100 (MQ=255)
                                                                                    ttCACTGGCAAACTGCGCCACTGGCAGCAGTTCCAGCGCGGTAATGCCCAATTGTTTCAAATAGTTGATCATCACCGGATGCCCGAGGGCTTTATAAGTg                 >  2:3057660/1‑100 (MQ=255)
                                                                                    ttCACTGGCAAACTGCGCCACTGGCAGCAGTTCCAGCGCGGTAATGCCCAATTGTTTCAAATAGTTGATCATCACCGGATGCCCGAGGGCTTTATAAGTg                 <  1:1199973/100‑1 (MQ=255)
                                                                                        cTGGCAAACTGCGCCACTGGCAGCAGTTCCAGCGCGGTAATGCCCAATTGTTTCAAATAGTTGATCATCACCGGATGCCCGAGGGCTTTATAAGTGCCAc             >  2:314941/1‑100 (MQ=255)
                                                                                        cTGGCAAACTGCGCCACTGGCAGCAGTTCCAGCGCGGTAATGCCCAATTGTTTCAAATAGTTGATCATCACCGGATGCCCGAGGGCTTTATAAGTGCCAc             >  1:2785572/1‑100 (MQ=255)
                                                                                         tGGCAAACTGCGCCACTGGCAGCAGTTCCAGCGCGGTAATGCCCAATTGTTTCAAATAGTTGATCATCACCGGATGCCCGAGGGCTTTATAAGTGCCACg            >  2:1335809/1‑100 (MQ=255)
                                                                                         tGGCAAACTGCGCCACTGGCAGCAGTTCCAGCGCAGTAATGCCCAAATGGTTCAAATAGTTGAACATCCCCCGATGCCCGACGGCTGTACAAGTGCCAc             >  1:1111696/1‑99 (MQ=255)
                                                                                          ggCAAACTGTGCCACTGGCAGCAGTTCCAGCGCGGTAATGCCCAATTGTTTCAAATAGTTGATCATCACCGGATGCCCGAGGGCTTTATAAGTGCCACgg           >  1:1842357/1‑100 (MQ=255)
                                                                                          ctggaaCTGCTGCCAGTGGCGCAGTTCCAGCGCGGTAATGCCCAATTGTTTCAAATAGTTGATCATCACCGGATGCCCGAGGGCTTTATAAGTGCCACgg           >  1:681909/5‑100 (MQ=38)
                                                                                           tggaaCTGCTGCCAGTGGCGCAGTTCCAGCGCGGTAATGCCCAATTGTTTCAAATAGTTGATCATCACCGGATGCCCGAGGGCTTTATAAGTGCCACGGa          >  1:1287597/4‑100 (MQ=255)
                                                                                           tggaaCTGCTGCCAGTGGCGCAGTTCCAGCGCGGTAATGCCCAATTGTTTCAAATAGTTGATCATCACCGGATGCCCGAGGGCGTTATAAGTGCCACGGa          >  1:4035550/4‑100 (MQ=255)
                                                                                           gCAAACTGCGCCACTGGCAGCAGTTCCAGCGCGGTAATGCCCAATTGTTTCAAATAGTTGATCATCACCGGATGCCCGAGGGCTTTATAAGTGCCACGGa          <  2:4343999/100‑1 (MQ=255)
                                                                                            ggaaCTGCTGCCAGTGGCGCAGTTCCAGCGCGGTAATGCCCAATTGTTTCAAATAGTTGATCATCACCGGATGCCCGAGGGCTTTATAAGTGCCACGGAt         >  2:2839958/3‑100 (MQ=255)
                                                                                            ggaaCTGCTGCCAGTGGCGCAGTTCCAGCGCGGTAATGCCCAATTGTTTCAAATAGTTGATCATCACCGGATGCCCGAGGGCTTTATAAGTGCCACGGAt         >  2:467022/3‑100 (MQ=255)
                                                                                            cAAACTGCGCCACTGGCAGCAGTTCCAGCGCGGTAATGCCCAATTGTTTCAAATAGTTGATCATCACCGGATGCCCGAGGGCTTTATAAGTGCCACGGAt         >  1:550100/1‑100 (MQ=255)
                                                                                            cAAACTGCGCCACTGGCAGCAGTTCCAGCGCGGTAATGCCCAATTGTTTCAAATAGTTGATCATCACCGGATGCCCGAGGGCTTTATAAGTGCCACGGAt         >  1:1708646/1‑100 (MQ=255)
                                                                                             gaaCTGCTGCCAGTGGCGCAGTTCCAGCGCGGTAATGCCCAATTGTTTCAAATAGTTGATCATCACCGGATGCCCGAGGGCTTTATAAGTGCCACGGAtc        >  2:2431474/2‑100 (MQ=255)
                                                                                              aaCTGCTGCCAGTGGCGCAGTTCCAGCGCGGTAATGCCCAATTGTTTCAAATAGTTGATCATCACCGGATGCCCGAGGGCTTTATAAGTGCCACGGAtct       >  1:3314384/1‑100 (MQ=255)
                                                                                              aaCTGCTGCCAGTGGCGCAGTTCCAGCGCGGTAATGCCCAATTGTTTCAAATAGTTGATCATCACCGCACGCCCGACGGCCTTATAAGTccccc             >  1:3749552/1‑92 (MQ=255)
                                                                                                  gcgcCACTGGCAGCAGTTCCAGCGCGGTAATGCCCAATTGTTTCAAATAGTTGATCATCACCGGATGCCCGAGGGCTTTATAAGTGCCACGGCTCTCGAc   >  1:3178133/1‑100 (MQ=255)
                                                                                                  gcgcCACTGGCAGCAGTTCCAGCGCGGTAATGCCCAATTGTTTCAAATAGTTGATCATCACCGGATGCCCGAGGGCTTTATAAGTGCCACGGATCTCGAc   >  2:40760/1‑100 (MQ=255)
                                                                                                  gcgcCACTGGCAGCAGTTCCAGCGCGGTAATGCCCAATTGTTTCAAATAGTTGATCATCACCGGATGCCCGAGGGCTTTATAAGTGCCACGGATCTCGAc   >  1:1930243/1‑100 (MQ=255)
                                                                                                    |                                                                                                   
GCAGGCATACGCCGGATGCAGCGCAAACATCGCCACCGGGTTGTAACCCCAGTAGTTACTTAGCCCCATGCGTTGCAGACGTGGTTCACTGGCAAACTGCGCCACTGGCAGCAGTTCCAGCGCGGTAATGCCCAATTGTTTCAAATAGTTGATCATCACCGGATGCCCGAGGGCTTTATAAGTGCCACGGATCTCGACC  >  NC_000913/3570615‑3570813

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: