New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1670955 =	101 (0.640)	19 (0.140)	10/152	NT	17.8%	intergenic (+3/‑421)	ynfM/asr	putative arabinose efflux transporter/acid shock‑inducible periplasmic protein
	?	NC_000913	1670995 =	90 (0.670)					intergenic (+43/‑381)	ynfM/asr	putative arabinose efflux transporter/acid shock‑inducible periplasmic protein

CTAGACGCGCTGCGGGAATTGGCTGGCGCTTCGTCTATTTTAGGATGGCTATTAACGTTGGTTTGAGCTGGCAATAAGTCCGGACGGGTATTTACCGCAGTCCGGACTTATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/1671066‑1670955 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtccggacttattGCCAGCTCAAACCAACGTTAATAGCCATCCTAAAATAGACGAAGCGCCAGCCAATTCCCGCAGCGCGTCTAGCGTCATCAGGATTATAAGTACCCAAAT  >  NC_000913/1670995‑1671093                                                                                                                                                                                                                     CTAGACGCGCTGCGGGAATTGGCTGGCGCTTCGTCTATTTTAGGATGGCTATTAACGTTGGTTTGAGCTGGCAATAAGTCCGGACGGGTATTTACCGCAG                                                                                                                 >  1:3835310/1‑100   AGACGCGCTGCGGGAATTGGCTGGCGCTTCGTCTATTTTAGGATGGCTATTAACGTTGGTTTGAGCTGGCAATAAGTCCGGACGGGTATTTACCGCAGTC                                                                                                               >  2:2194127/1‑100      CGCGCTGCGGGAATTGGCTGGCGCTTCGTCTATTTTAGGATGGCTATTAACGTTGGTTTGAGCTGGCAATAAGTCCGGACGGGTATTTACCGCAGTCCGG                                                                                                            >  2:242371/1‑100      CGCGCTGCGGGAATTGGCTGGCGCTTCGTCTATTTTAGGATGGCTATTAACGTTGGTTTGAGCTGGCAATAAGTCCGGACGGGTATTTACCGCAGTCCGG                                                                                                            <  2:2069202/100‑1      CGCGCTGCGGGAATTGGCTGGCGCTTCGTCTATTTTAGGATGGCTATTAACGTTGGTTTGAGCTGGCAATAAGTCCGGACGGGTATTTACCGCAGTCCGG                                                                                                            <  1:1105092/100‑1      CGCGCTGCGGGAATTGGCTGGCGCTGCGTCTATTTTAGGAGGGCTATTAACGTTGGTTTGAGCTGGCAATAAGTCCGGACGGGTATTTACCGCAGTCCGG                                                                                                            >  1:4187406/1‑100        nGCTGCGGGAATTGGCTGGCGCTTCGTCTATTTTAGGATGGCTATTAACGTTGGTTTGAGCTGGCAATAAGTCCGGACGGGTATTTACCGCCGTCCGGAC                                                                                                          >  2:1586516/2‑100        CGCTGCGGGAATTGGCTGGCGCTTCGTCTATTTTAGGATGGCTATTAACGTTGGTTTGAGCTGGCAATAAGTCCGGACGGGTATTTACCGCAGTCCGGAC                                                                                                          >  2:432847/1‑100        CGCTGCGGGAATTGGCTGGCGCTTCGTCTATTTTAGGATGGCTATTAACGTTGGTTTGAGCTGGCAATAAGTCCGGACGGGTATTTACCGCAGTCCGGAC                                                                                                          <  2:3741815/100‑1        CGCTGCGGGAATTGGCTGGCGCTTCGTCTATTTTAGGATGGCTATTAACGTTGGTTTGAGCTGGCAATAAGTCCGGACGGGTATTTACCGCAGTCCGGAC                                                                                                          <  2:2478247/100‑1        CGCTGCGGGAATTGGCTGGCGCTTCGTCTATTTTAGGATGGCTATTAACGTTGGTTTGAGCTGGCAATAAGTCCGGACGGGTATTTACCGCAGTCCGGAC                                                                                                          <  2:1331313/100‑1        CGCTGCGGGAATTGGCTGGCGCTTCGTCTATTTTAGGATGGCTATTAACGTTGGTTTGAGCTGGCAATAAGTCCGGACGGGTATTTACCGCAGTCCGGAC                                                                                                          <  1:2760385/100‑1        CGCTGCGGGAATTGGCTGGCGCTTCGTCTATTTTAGGATGGCTATTAACGTTGGTTTGAGCTGGCAATAAGTCCGGACGGGTATTTACCGCAGTCCGGA                                                                                                           >  1:1579199/1‑99        CGCTGCGGAAATTGGCTGGCGCTTCGTCTATTTTAGGATGGCTATTAACGTTGGTTTGAGCTGGCAATAAGTCCGGACGGGTATTTACCGCAGTCCGGAC                                                                                                          <  2:3041553/100‑1          CTGCGGGAATTGGCTGGCGCTTCGTCTATTTTAGGATGGCTATTAACGTTGGTTTGAGCTGGCAATAAGTCCGGACGGGTATTTACCGCAGTCCGGACTT                                                                                                        >  1:4321767/1‑100          CTGCGGGAATTGGCTGGCGCTTCGTCTATTTTAGGATGGCTATTAACGTTGGTTTGAGCTGGCAATAAGTCCGGACGGGTATTTACCGCAGTCCGGACTT                                                                                                        >  2:1499714/1‑100          CTGCGGGAATTGGCTGGCGCTTCGTCTATTTTAGGATGGCTATTAACGTTGGTTTGAGCTGGCAATAAGTCCGGACGGGTATTTACCGCAGTCCGGACTT                                                                                                        >  2:1499008/1‑100          CTGCGGGAATTGGCTGGCGCTTCGTCTATTTTAGGATGGCTATTAACGTTGGTTTGAGCTGGCAATAAGTCCGGACGGGTATTTACCGCAGTCCGGACTT                                                                                                        >  1:274532/1‑100           TGCGGGAATTGGGTGGCGCTTGGGCTATTTGAGGATGGCTATTGAGGTTGGTTTGAGTTGGCAATAAGTCCGGACGGGTATTTACCGCAGTCCGGAC                                                                                                          <  1:4102426/97‑1            GCGGGAATTGGCTGGCGCTTCGTCTATTTTAGGATGGCTATTAACGTTGGTTTGAGCTGGCAATAAGTCCGGACGGGTATTTACCGCAGTCCGGACTTAT                                                                                                      <  1:1545288/100‑1             CGGGAATTGGCTGGCGCTTCGTCTATTTTAGGATGGCTATTAACGTTGGTTTGAGCTGGCAATAAGTCCTGACGGGTATTTACCGCAGTCCGGACTTATT                                                                                                     <  1:3198573/100‑1                                                  TATTAACGTTGGTTTGAGCTGGCAATAAGTCCGGACGGGTATTTACCGCAGTCCGGACTTATTGCCAGCTCAAACCAACGTTAATAGCCATCCTAAAATA                                                                >  2:1109057/1‑100                                                                   GCTGGCAATAAGTCCGGACGGGTATTTACCGCAGTCCGGACTTATTGCCAGCTCAAACCAACGTTAATAGCCATCCTAAAATAGACGAAGCGCCAGCCAA                                               >  1:1103822/1‑100                                                                    CTGGCAATAAGTCCGGACGGGTATTTACCGCAGTCCGGACTTATTGCCAGCTCAAACCAACGTTAATAGCCATCCTAAAATAGACGAAGCGCCAGCCAAT                                              >  1:1940421/1‑100                                                                      GGCAATAAGTCCGGACGGGTATTTACCGCAGTCCGGACTTATTGCCAGCTCAAACCAACGTTAATAGCCATCCTAAAATAGACGAAGCGCCAGCCAATTC                                            >  2:2474822/1‑100                                                                        CAATAAGTCCGGACGGGTATTTACCGCAGTCCGGACTTATTGCCAGCTCAAACCAACGTTAATAGCCATCCTAAAATAGACGAAGCGCCAGCCAATTCC                                           >  1:3416992/1‑99                                                                             AGTCCGGACGGGTATTTACCGCAGTCCGGACTTATTGCCAGCTCAAACCAACGTTAATAGCCATCCTAAAATAGACGAAGCGCCAGCCAATTCCCGCAGC                                     >  2:1940103/1‑100                                                                             AGTCCGGACGGGTATTTACCGCAGTCCGGACTTATTGCCAGCTCAAACCAACGTTAATAGCCATCCTAAAATAGACGAAGCGCCAGCCAATTCCCGCAGC                                     >  1:36462/1‑100                                                                             AGTCCGGACGGGTATTTACCGCAGTCCGGACTTATTGCCAGCTCAAACCAACGTTAATAGCCATCCTAAAATAGACGAAGCGCCAGCCAATTCCCGCAG                                      >  1:2737036/1‑99                                                                              GTCCGGACGGGTATTTACCGCAGTCCGGACTTATTGCCAGCTCAAACCAACGTTAATAGCGATCCTAAAATAGACGAAGCGCCAGCAAATTCCCGCAGCG                                    >  1:3469278/1‑100                                                                              GTCCGGACGGGTATTTACCGCAGTCCGGACTTATTGCCAGCTCAAACCAACGTTAATAGCCATCCTAAAATAGACGAAGCGCCAGCCAATTCCCGCAGCG                                    >  1:928212/1‑100                                                                              GTCCGGACGGGTATTTACCGCAGTCCGGACTTATTGCCAGCTCAAACCAACGTTAATAGCCATCCTAAAATAGACGAAGCGCCAGCCAATTCCCGCAGCG                                    >  1:1722690/1‑100                                                                              GTCCGGACGGGTATTTACCGCAGTCCGGACTTATTGCCAGCTCAAACCAACGTTAATAGCCATCCTAAAATAGACGAAGCGCCAGCCAATTCCCGCAGCG                                    >  2:1151891/1‑100                                                                              GTCCGGACGGGTATTTACCGCAGTCCGGACTTATTGCCAGCTCAAACCAACGTTAATAGCCATCCTAAAATAGACGAAGCGCCAGCCAATTCCCGCAGCG                                    >  1:3029638/1‑100                                                                              GTCCGGACGGGTATTTACCGCAGTCCGGACTTATTGCCAGCTCAAACCAACGTTAATAGCCATCCTAAAATAGACGAAGCGCCAGCCAATTCCCGCAGCG                                    >  2:3257168/1‑100                                                                                CCGCACGGGTATTTACCGCAGTCCGGACTTATTGCCAGCTCAAACCAACGTTAATAGCCATCCTAAAATAGACGACCCGCCAGCCACCTCCCCCAGCGCG                                  >  1:1276238/1‑100                                                                                 CGGACGGGTATTTACCGCAGTCCGGACTTATTGCCAGCTCAAACCAACGTTAATAGCCATCCTAAAATAGACGAAGCGCCAGCCAATTCCCGCAGCGCGT                                 >  2:1324626/1‑100                                                                                 CGGACGGGTATTTACCGCAGTCCGGACTTATTGCCAGCTCAAACCAACGTTAATAGCCATCCTAAAATAGACGAAGCGCCAGCCAATTCCCGCAGCGCGT                                 >  1:2525988/1‑100                                                                                  GGACGGGTATTTACCGCAGTCCGGACTTATTGCCAGCTCAAACCAACGTTAATAGCCATCCTAAAATAGACGAAGCGCCAGCCAATTCCCGCAGCGCGTC                                >  2:154590/1‑100                                                                                  GGACGGGTATTTACCGCAGTCCGGACTTATTGCCAGCTCAAACCAACGTTAATAGCCATCCTAAAATAGACGAAGCGCCAGCCAATTCCCGCAGCGCGTC                                >  1:1133449/1‑100                                                                                                    GTCCGGACTTATTGCCAGCTCAAACCAACGTTAATAGCCATCCTAAAATAGACGAAGCGCCAGCCAATTCCCGCAGCGCGTCTAGCGTCATCAGGATTAT              <  2:3287639/100‑1                                                                                                    GTCCGGACTTATTGCCAGCTCAAACCAACGTTAATAGCCATCCTAAAATAGACGAAGCGCCAGCCAATTCCCGCAGCGCGTCTAGCGTCATCAGGATTAT              <  2:2087410/100‑1                                                                                                    GTCCGGACTTATTGCCAGCTCAAACCAACGTTAATAGCCATCCTAAAATAGACGAAGCGCCAGCCAATACCCGCAGCGCGTCTAGCGTCATCAGGATTAT              <  1:3276529/100‑1                                                                                                     TCCGGACTTATTGCCAGCTCAAACCAACGTTAATAGCCATCCTAAAATAGACGAAGCGCCAGCCAATTCCCGCAGCGCGTCTAGCGTCATCAGGATTATA             <  1:3251651/100‑1                                                                                                       CGGACTTATTGCCAGCTCAAACCAACGTTAATAGCCATCCTAAAATAGACGAAGCGCCAGCCAATTCCCGCAGCGCGTCTAGCGTCATCAGGATTATAAG           >  2:491199/1‑100                                                                                                        GGACTTATTGCCAGCTCAAACCAACGTTAATAGCCATCCTAAAATAGACGAAGCGCCAGCCAATTCCCGCAGCGCGTCTAGCGTCATCAGGATTATAAGT          >  1:2417847/1‑100                                                                                                        GGACTTATTGCCAGCTCAAACCAACGTTAATAGCCATCCTAAAATAGACGAAGCGCCAGCCAATTCCCGCAGCGCGTCTAGCGTCATCAGGATTATAAGT          <  2:252209/100‑1                                                                                                         GACTTATTGCCAGCTAAAACCAACGTTAATAGCCATCCTAAAATAGACGAAGCGCCAGCCAATTACCGCAGCGCGTCTAGCGTCATCAGGATTATAAGTA         <  1:320177/100‑1                                                                                                          ACTTATTGCCAGCTCAAACCAACGTTAATAGCCATCCTAAAATAGACGAAGCGCCAGCCAATTCCCGCAGCGCGTCTAGCGTCATCAGGATTATAAGTA         <  1:3420063/99‑1                                                                                                           CTTATTGCCAGCTCAAACCAACGTTAATAGCCATCCTAAAATAGACGAAGCGCCAGCCAATTCCCGCAGCGCGTCTAGCGTCATCAGGATTATAAGTACC       >  2:2182963/1‑100                                                                                                            TTATTGCCAGCTCAAACCAACGTTAATAGCCATCCTAAAATAGACGAAGCGCCAGCCAATTCCCGCAGCGCGTCTAGCGTCATCAGGATTATAAGTACCC      <  1:2293964/100‑1                                                                                                             TATTGCCAGCTCAAACCAACGTTAATAGCCATCCTAAAATAGACGAAGCGCCAGCCAATTCCCGCAGCGCGTCTAGCGTCATCAGGATTATAAGTACCaa     >  1:1179953/1‑98                                                                                                             TATTGCCAGCTCAAACCAACGTTAATAGCCATCCTAAAATAGACGAAGCGCCAGCCAATTCCCGCAGCGCGTCTAGCGTCATCAGGATTATAAGTACCCA     >  2:2540447/1‑100                                                                                                             TATTGCCAGCTCAAACCAACGTTAATAGCCATCCTAAAATAGACGAAGCGCCAGCCAATTCCCGCAGCGCGTCTAGCGTCATCAGGATTATAAGTACCCA     >  2:2768712/1‑100                                                                                                             TATTGCCAGCTCAAACCAACGTTAATAGCCATCCTAAAATAGACGAAGCGCCAGCCAATTCCCGCAGCGCGTCTAGCGTCATCAGGATTATAAGTACCCA     >  1:3614849/1‑100                                                                                                             TATTGCCAGCTCAAACCAACGTTAATAGCCATCCTAAAATAGACGAAGCGCCAGCCAATTCCCGCAGCGCGTCTAGCGTCATCAGGATTATAAGTACCCA     >  2:427298/1‑100                                                                                                               TTGCCAGCTCAAACCAACGTTAATAGCCATCCTAAAATAGACGAAGCGCCAGCCAATTCCCGCAGCGCGTCTAGCGTCATCAGGATTATAAGTACCCAAA   >  2:1073098/1‑100                                                                                                                TGCCAGCTCAAACCAACGTTAATAGCCATCCTAAAATAGACGAAGCGCCAGCCAATTCCCGCAGCGCGTCTAGCGTCATCAGGATTATAAGTACCCAAAT  >  1:3749885/1‑100                                                                                                                                                                                                                     CTAGACGCGCTGCGGGAATTGGCTGGCGCTTCGTCTATTTTAGGATGGCTATTAACGTTGGTTTGAGCTGGCAATAAGTCCGGACGGGTATTTACCGCAGTCCGGACTTATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/1671066‑1670955 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtccggacttattGCCAGCTCAAACCAACGTTAATAGCCATCCTAAAATAGACGAAGCGCCAGCCAATTCCCGCAGCGCGTCTAGCGTCATCAGGATTATAAGTACCCAAAT  >  NC_000913/1670995‑1671093

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.