| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2232735 | NA (NA) | 9 (0.060) | 8/166 | NT | NA | intergenic (+7/‑143) | cdd/sanA | cytidine/deoxycytidine deaminase/DUF218 superfamily vancomycin high temperature exclusion protein |
| ? | NC_000913 | = 2232765 | NA (NA) | noncoding (30/34 nt) | REP155 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP155 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
AGCCGATGCGCCGTTGATTCAGTGGGATGCCACCTCCGCAACGCTGAAAGCTCTCGGCTGTCACAGTATCGACCGAGTGCTTCTCGCTTAAGCCTGG‑‑Tgccgga‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2232638‑2232735‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCGGACAAGGCGTTCACGCCGCATCCGGCACCAGGCTTAAGCGAGAAGCACTCGGTCGATACTGTGACAGCCGAGAGCTTTCAGCGTTGCGGAGGTGGCATCC < NC_000913/2232765‑2232662 AGCCGATGCGCCGTTGATTCAGTGGGATGCCACCTCCGCAACGCTGAAAGCTCTCGGCTGTCACAGTATCGACCGAGTGCTTCTCGCTTAAGCCTGG‑‑TGC > 2:1229137/1‑100AGCCGATGCGCCGTTGATTCAGTGGGATGCCACCTCCGCAACGCTGAAAGCTCTCGGCTGTCACAGTATCGACCGAGTGCTTCTCGCTTAAGCCTGG‑‑TGC > 2:4240087/1‑100AGCCGATGCGCCGTTGATTCAGTGGGATGCCACCTCCGCAACGCTGAAAGCTCTCGGCTGTCACAGTATCGACCGAGTGCTTCTCGCTTAAGCCTGG‑‑TGC > 2:3255664/1‑100 GCCGATGCGCCGTTGATTCAGTGGGATGCCACCTCCGCAACGCTGAAAGCTCTCGGCTGTCACAGTATCGACCGAGTGCTTCTCGCTTAAGCCTGG‑‑TGCC < 2:1426966/100‑1 GCCGATGCGCCGTTGATTCAGTGGGATGCCACCTCCGCAACGCTGAAAGCTCTCGGCTGTCACAGTATCGACCGAGTGCTTCTCGCTTAAGCCTGG‑‑TGCC > 2:3282163/1‑100 CCGATGCGCCGTTGATTCAGTGGGATGCCACCTCCGCAACGCTGAAAGCTCTCGGCTGTCACAGTATCGACCGAGTGCTTCTCGCTTAAGCCTGG‑‑TGCCG < 2:3295041/100‑1 CCGATGCGCCGTTGATTCAGTGGGATGCCACCTCCGCAACGCTGAAAGCTCTCGGCTGTCACAGTATCGACCGAGTGCTTCTCGCTTAAGCCTGG‑‑TGCCG > 2:3339478/1‑100 CCGATGCGCCGTTGATTCAGTGGGATGCCACCTCCGCAACGCTGAAAGCTCTCGGCTGTCACAGTATCGACCGAGTGCTTCTCGCTTAAGCCTGG‑‑TGCCG < 1:4263580/100‑1 CCGATGCGCCGTTGATTCAGTGGGATGCCACCTCCGCAACGCTGAAAGCTCTCGGCTGTCACAGTATCGACCGAGTGCTTCTCGCTTAAGCCTGG‑‑TGCCG > 2:3169094/1‑100 CCGATGCGCCGTTGATTCAGTGGGATGCCACCTCCGCAACGCTGAAAGCTCTCGGCTGTCACAGTATCGACCGAGTGCTTCTCGCTTAAGCCTGG‑‑TGCCG < 1:1322156/100‑1 CGATGCGCCGTTGATTCAGTGGGATGCCACCTCCGCAACGCTGAAAGCTCTCGGCTGTCACAGTATCGACCGAGTGCTTCTCGCTTAAGCCTGG‑‑TGCCGG > 1:9233/1‑100 CGATGCGCCGTTGATTCAGTGGGATGCCACCTCCGCAACGCTGAAAGCTCTCGGCTGTCACAGTATCGACCGAGTGCTTCTCGCTTAAGCCTGG‑‑TGCCGG < 2:451341/100‑1 GATGCGCCGTTGATTCAGTGGGATGCCACCTCCGCAACGCTGAAAGCTCTCGGCTGTCACAGTATCGACCGAGTGCTTCTCGCTTAAGCCTGG‑‑TGCCGGA < 2:3840286/100‑1 TGCCACCTCCTAAACGCTGAAAGCTCTCGGCTTTCACAGTATCGACCGAGTGCTTCTCGCTTAAGCCTGG‑‑TGCCTGACAAGGCGTTCACGCCGCATCCGG < 1:1563208/100‑1 GCCGCCTCCGCAACGCTGAAAGCTCTCGGCTGTCACAGTATCGACCGAGTGCTTCTCGCTTAAGCCTGG‑‑TGCCGGACAAGGCGTTCACGCCGCATCCGGC < 2:1676947/100‑1 CCACCTCCGCAACGCTGAAAGCTCTCGGCTGTCACAGTATCGACCGAGTGCTTCTCGCTTAAGCCTGG‑‑TGCCGGACAAGGCGTTCACGCCGCATCCCGCA < 1:1593281/100‑1 CACCTCCGCAACGCTGAAAGCTCTCGGCTGTCACAGTATCGACCGAGTGCTTCTCGCTTAAGCCTGG‑‑TGCCGGACAAGGCGTTCACGCCGCATCCGGCAC < 1:1021298/100‑1 CCTCCGCAACGCTGAAAGCTCTCGGCTGTCACAGTATCGACCGAGTGCTTCTCGCTTAAGCCTGG‑‑TGCCGGACAAGGCGTTCACGCCGCATCCGGCACCA < 1:1254475/100‑1 CCGCAACGCTGAAAGCTCTCGGCTGTCACAGTATCGACCGAGTGCTTCTCGCTTAAGCCTGG‑‑TGCCGGACAAGGCGTTCACGCCGCATCCGGCACCAGGC < 2:1683525/100‑1 CGCAACGCTGAAAGCTCTCGGCTGTCACAGTATCGACCGAGTGCTTCTCGCTTAAGCCTGGCAAGCCGGACAAGGCGTTCACGCCGCATCCGGCACC < 2:1388986/97‑1 gcttacAGCTCTCGGCTGTCACAGTATCGACCGAGTGCTTCTCGCTTAAGCCTGG‑‑TGCCGGACAAGGCGTTCACGCCGCATCCGGCACCAGGCTTAAGCG < 1:2543381/94‑1 GCTGAAAGCTCTCCGCTGTCACAGTATCGACCGAGTGCTTCTCGCTTAAGCCTGGCAAGCCGGACAAGGCGTTCACGCCGCATCCGGCACCAGGCTTAAG < 1:2108854/100‑1 GCCGGACAAGGCGTTCACGCCGCATCCGGCACCAGGCTTAAGCGAGAAGCACTCGGTCGATACTGTGACAGCCGAGAGCTTTCAGCGTTGCGGAGGTGGC < 2:3856767/100‑1 GCCGGACAAGGCGTTCACGCCGCATCCGGCACCAGGCTTAAGCGAGAAGCACTCGGTCGATACTGTGACAGCCGAGAGCTTTCAGCGTTGCGGAGGTGGC > 2:818136/1‑100 GCCGGACAAGGCGTTCACGCCGCATCCGGCACCAGGCTTAAGCGAGAAGCACTCGGTCGATACTGTGACAGCCGAGAGCTTTCAGCGTTGCGGAGGTGGC < 2:2194430/100‑1 CCGGACAAGGCGTTCACGCCGCATCCGGCACCAGGCTTAAGCGAGAAGCACTCGGTCGATACTGTGACAGCCGAGAGCTTTCAGCGTTGCGGCGGTGGCA > 2:4298002/1‑100 CCGGACAAGGCGTTCACGCCGCATCCGGCACCAGGCTTAAGCGAGAAGCACTCGGTCGATACTGTGACAGCCGAGAGCTTTCAGCGTTGCGGAGGTGGCA < 2:3652179/100‑1 CCGGACAAGGCGTTCACGCCGCATCCGGCACCAGGCTTAAGCGAGAAGCACTCGGTCGATACTGTGACAGCCGAGAGCTTTCAGCGTTGCGGAGGTGGCA > 1:4070957/1‑100 CGGACAAGGCGTTCACGCCGCATCCGGCACCAGGCTTAAGCGAGAAGCACTCGGTCGATACTGTGACAGCCGAGAGCTTTCAGCGTTGCGGAGGTGGCAT < 2:3159307/100‑1 CGGACAAGGCGTTCACGCCGCATCCGGCACCAGGCTTAAGCGAGAAGCACTCGGTCGATACTGTGACAGCCGAGAGCTTTCAGCGTTGCGGAGGTGGCAT > 1:1029462/1‑100 GGACAAGGCGTTCACGCCGCATCCGGCACCAGGCTTAAGCGAGAAGCACTCGGTCGATACTGTGACAGCCGAGAGCTTTCAGCGTTGCGGAGGTGGCATC < 2:105630/100‑1 GACAAGGCGTTCACGCCGCATCCGGCACCAGGCTTAAGCGAGAAGCACTCGGTCGATACTGTGACAGCCGAGAGCTTTCAGCGTTGCGGAGGTGGCATCC > 1:130611/1‑100 AGCCGATGCGCCGTTGATTCAGTGGGATGCCACCTCCGCAACGCTGAAAGCTCTCGGCTGTCACAGTATCGACCGAGTGCTTCTCGCTTAAGCCTGG‑‑Tgccgga‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2232638‑2232735‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCGGACAAGGCGTTCACGCCGCATCCGGCACCAGGCTTAAGCGAGAAGCACTCGGTCGATACTGTGACAGCCGAGAGCTTTCAGCGTTGCGGAGGTGGCATCC < NC_000913/2232765‑2232662 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |