| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2775873 = | 150 (0.950) | 24 (0.170) | 10/162 | NT | 15.4% | intergenic (+57/‑46) | ypjI/yfjX | pseudogene, CP4‑57 putative prophage remnant;Phage or Prophage Related/CP4‑57 prophage; putative antirestriction protein |
| ? | NC_000913 | 2775896 = | 128 (0.900) | intergenic (+80/‑23) | ypjI/yfjX | pseudogene, CP4‑57 putative prophage remnant;Phage or Prophage Related/CP4‑57 prophage; putative antirestriction protein | |||||
CGCTCAACTCAAATTCGGATCCGTTAGCGGGTACGAGGTCGTACTGTGTCTGTGTTGTCATGGGTATGTCTCCGTGAATAAAAAACGCCAGCGGCGATGGCTGGCGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/2775979‑2775873‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctggcgtTTTTTATTCACGGAGACATACCCATGACAACACAGACACAGTACGACCTCGTACCCGCTAACGGATCCGAATTTGAGTTGAGCGTAACGCAGGTACCCG > NC_000913/2775896‑2775994 CGCTCAACTCAAATTCGGATCCGTTAGCGGGTACGAGGTCGTACTGTGTCTGTGTTGTCATGGGTATGTCTCCGTGAATAAAAAACGCCAGCGGCGATGG > 2:4072111/1‑100 GCTCAACTCAAATTCGGATCCGTTAGCGGGTACGAGGTCGTACTGTGTCTGTGTTGTCATGGGTATGTCTCCGTGAATAAAAAACGCCAGCGGCGATGGC > 2:2523794/1‑100 GCTCAACTCAAATTCGGATCCGTTAGCGGGTACGAGGTCGTACTGTGTCTGTGTTGTCATGGGTATGTCTCCGTGAATAAAAAACGCCAGCGGCGATGGC < 1:528309/100‑1 TCAACTCAAATTCGGATCCGTTAGCGGGTACGAGGTCGTACTGTGTCTGTGTTGTCATGGGTATGTCTCCGTGAATAAAAAACGCCAGCGGCGATGGCTG < 1:3553426/100‑1 AACTCAAATTCGGATCCGTTAGCGGGTACGAGGTCGTACTGTGTCTGTGTTGTCATGGGTATGTCTCCGTGAATAAAAAACGCCAGCGGCGATGGCTGGC > 2:3523191/1‑100 AACTCAAATTCGGATCCGTTAGCGGGTACGAGGTCGTACTGTGTCTGTGTTGTCATGGGTATGTCTCCGTGAATAAAAAACGCCAGCGGCGATGGCTGGC > 2:139877/1‑100 CTCAAATTCGGATCCGTTAGCGGGTACGAGGTCGTACTGTGTCTGTGTTGTCATGGGTATGTCTCCGTGAATAAAAAACGCCAGCGGCGATGGCTGGCGT < 2:3802119/100‑1 CTCAAATTCGGATCCGTTAGCGGGTACGAGGTCGTACTGTGTCTGTGTTGTCATGGGTATGTCTCCGTGAATAAAAAACGCCAGCGGCGATGGCTGGCGT > 2:1769760/1‑100 CTCAAATTCGGATCCGTTAGCGGGTACGAGGTCGTACTGTATCTGTGTTGTCATGGGTATGTCTCCGTGAATAAAAAACGCCAGCGGCGAAGGCTGGCGT > 1:840982/1‑100 CAAATTCGGATCCGTTAGCGGGTACGAGGTCGTACTGTGTCTGTGTTGTCATGGGTATGTCTCCGTGAATAAAAAACGCCAGCGGCGATGGCTGGCn < 1:1303721/97‑2 CTCCGTGAATAAAAAACGCCAGCGGCGATGGCTGGCGGTTGTTATTCAGGGAGACATACCCATGACAACACAGAGACAGTACGACCGTGTAGCCGCTAAC > 1:1981679/1‑100 CGTGAATAAAAAACGCCAGCGGCGATGGCTGGCGTTTTTTATTCACGGAGACATACCCATGACAACACAGACACAGTACGACCTCGTACCCGCTAACGG > 1:1805647/1‑99 TGAATAAAAAACGCCAGCGGCGATGGCTGGCGTTTTTTATTCACGAAGACATACCCATGACAACACAGACACAGTACGACCTCGTACCCACTAACGGATC > 1:1678893/1‑100 ATAAAAAACGCCAGCGGCGATGGCTGGCGTTTTTTATTCACGGAGACATACCCATGACAACACAGACACAGTACGACCTCGTACCCGCTAACGGATCCGA > 1:89182/1‑100 ATAAAAAACGCCAGCGGCGATGGCTGGCGTTTTTTATTCACGGAGACATACCCATGACAACACAGACACAGTACGACCTCGTACCCGCTAACGGATCCG > 1:2615790/1‑99 TAAAAAACGCCAGCGGCGATGGCTGGCGTTTTTTATTCACGGAGACATACCCATGACAACACAGACACAGTACGACCTCGTACCCGCTAACGGATCCGAA > 2:1555379/1‑100 AAAAAACGCCAGCGGCGATGGCTGGCGTTTTTTATTCACGGAGACATACCCATGACAACACAGACACAGTACGACCTCGTACCCGCTAACGGATCCGAAT > 2:2410230/1‑100 AAAAAACGCCAGCGGCGATGGCTGGCGTTTTTTATTCACGGAGACATACCCATGACAACACAGACACAGTACGACCTCGTACCCGCTAACGGATCCGAAT > 2:2617465/1‑100 AAAAAACGCCAGCGGCGATGGCTGGCGTTTTTTATTCACGGAGACATACCCATGACAACACAGACACAGTACGACCTCGTACCCGCTAACGGATCCGAAT > 1:2737336/1‑100 AAAAAACGCCAGCGGCGATGGCTGGCGTTTTTTATTCACGGAGACATACCCATGACAACACAGACACAGTACGACCTCGTACCCGCTAACGGATCCGAAT > 1:2735941/1‑100 AAAAAACGCCAGCGGCGATGGCTGGCGTTTTTTATTCACGGAGACATACCCATGACAACACAGACACAGTACGACCTCGTACCCGCTAACGGATCCGAAT > 2:3329987/1‑100 AAAAACGCCAGCGGCGATGGCTGGCGTTTTTTATTCACGGAGACATACCCATGACAGCACAGACACAGTACGACCTCGTACCCGCTAACGGATCCGAATT > 1:2824766/1‑100 AAAAACGCCAGCGGCGATGGCTGGCGTTTTTTATTCACGGAGACATACCCATGACAACACAGACACAGTACGACCTCGTACCCGCTAACGGATCCGAATT > 2:4059740/1‑100 AAAAACGCCAGCGGCGATGGCTGGCGTTTTTTATTCACGGAGACATACCCATGACAACACAGACACAGTACGACCTCGTACCCGCTAACGGATCCGAATT > 1:531526/1‑100 AAAAACGCCAGCGGCGATGGCTGGCGTTTTTTATTCACGGAGACATACCCATGACAACACAGACACAGTACGACCTCGTACCCGCTAACGGATCCGAATT > 1:3431143/1‑100 AACGCCAGCGGCGATGGCTGGCGTTTTTTATTCACGGAGACATACCCATGACAACACAGACACAGTACGACCTCGTACCCGCTAACGGATCCGAATTTGA > 2:1434318/1‑100 AACGCCAGCGGCGATGGCTGGCGTTTTTTATTCACGGAGACATACCCATGACAACACAGACACAGTACGACCTCGTACCCGCTAACGGATCCGAATTTGA > 2:3310242/1‑100 gatctAGCGGCGATGGCTGGCGTTTTTTATTCACGGAGACATACCCATGACAACACAGACACAGTACGACCTCGTACCCGCTAACGGATCCGAATTTGAG < 2:2445199/95‑1 gatctAGCGGCGATGGCTGGCGTTTTTTATTCACGGAGACATACCCATGACAACACAGACACAGTACGACCTCGTACCCGCTAACGGATCCGAATTTGAG < 2:2449335/95‑1 ACGCCAGCGGCGATGGCTGGCGTTTTTTATTCACGGAGACATACCCATGACAACACATACACAGTACGACCTCGTACCCGCTAACGAAACCGAATTTGAG > 1:852462/1‑100 ACGCCAGCGGCGATGGCTGGCGTTTTTTATTCACGGAGACATACCCATGACAACACAGACACAGTACGACCTCGTACCCGCTAACGGATCCGAATTTGAG > 2:3243207/1‑100 CCAGCGGCGATGGCTGGCGTTTTTTATTCACGGAGACATACCCATGACAACACAGACACAGTATGACCTCGTACCCGCTATCTGATCCGAATTTGAGTTG > 2:649250/1‑100 AGCGGCGATGGCTGGCGTTTTTTATTCACGGAGACATACCCATGACAACACAGACACAGTACGACCTCGTACCCGCTAACGGATCCGAATTTGAGagatc > 1:2449324/1‑95 AGCGGCGATGGCTGGCGTTTTTTATTCACGGAGACATACCCATGACAACACAGACACAGTACGACCTCGTACCCGCTAACGGATCCGAATTTGAGagatc > 1:2445188/1‑95 GCTGGCGTTTTTTATTCACGGAGACATACCCATGACAACACAGACACAGTACGACCTCGTACCCGCTAACGGATCCGAATTTGAGTTGAGCGTAACGCAG < 1:2532356/100‑1 GCTGGCGTTTTTTATTCACGGAGACATACCCATGACAACACAGACACAGTACGACCTCGTACCCGCTAACGGATCCGAATTTGAGTTGAGCGTAACGCAG < 2:3562721/100‑1 GCTGGCGTTTTTTATTCACGGAGACATACACATGACAACACATACACATTATGACCTCGTACCCGCTAACGGATCCGACTTTGAGTTCAGCGT > 1:2670011/1‑93 CTGGCGTTTTTTATTCACGGAGACATACCCATGACAACACAGACACAGTACGACCTCGTACCCGCTAACGGATCCGAATTTGAGTTGAGCGTAACGCAGG < 2:1466651/100‑1 TGGCGTTTTTTATTCACGGAGACATACCCATGACAACACAGACACAGTACGACCTCGTACCCGCTAACGGATCCGAATTTGAGTTGAGCGTAACGCAGGT < 1:1071275/100‑1 GCGTTTTTTATTCACGGAGACATACCCATGACAACACAGACACAGTACGACCTCGTACCCGCTAACGGATCCGAATTTGAGTTGAGCGTAACGCAGGTAC > 2:2471677/1‑100 CGTTTTTTATTCACGGAGACATACCCATGACAACACAGACACAGTACGACCTCGTACCCGCTAACGGATCCGAATTTGAGTTGAGCGTAACGCAGGTACC > 1:2198435/1‑100 GTTTTTTATTCACGGAGACATACCCATGACAACACAGACACAGTACGACGTCGTACCGGCTAAAGGATACGAATTTGAGTTGAGCGTAACGCAGG > 1:1997267/1‑95 GTTTTTTATTCACGGAGACATACCCATGACAACACAGACACAGTACGACCTCGTACCCGCTAACGGATCCGAATTTGAGTTGAGCGTAACGCAGGTACCC < 2:2088794/100‑1 TTTTTTATTCACGGAGACATACCCATGACAACACAGACACAGTACGACCTCGTACCCGCTAACGGATCCGAATTTGAGTTGAGCGTAACGCAGGTACCCG > 1:3143265/1‑100 CGCTCAACTCAAATTCGGATCCGTTAGCGGGTACGAGGTCGTACTGTGTCTGTGTTGTCATGGGTATGTCTCCGTGAATAAAAAACGCCAGCGGCGATGGCTGGCGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/2775979‑2775873‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctggcgtTTTTTATTCACGGAGACATACCCATGACAACACAGACACAGTACGACCTCGTACCCGCTAACGGATCCGAATTTGAGTTGAGCGTAACGCAGGTACCCG > NC_000913/2775896‑2775994 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |