New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3194563 =	172 (1.090)	31 (0.210)	10/168	NT	16.9%	intergenic (+38/‑203)	yqiK/ibsD	PHB family membrane protein, function unknown/toxic membrane protein
	?	NC_000913	3194925 =	142 (0.960)					intergenic (+100/‑216)	ibsD/ibsE	toxic membrane protein/toxic membrane protein

ATGCTTTCTCTGATGCAGTTTTGCCTTCCCCGAGCCGTCACGCAAAATGCTGCAACAACCTGATCATTTGCACTTTTTAGCGGAACGCAGATATAAAAAATCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/3194666‑3194563 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcccTGGCCCAAAAAGCCGGGGATTTTTTATATCTGCGTTCCGCTAAAAGGTGCAAATGCTCAGGACGTTGCAGCGTTTTGCGTGACCGCTCGGGGAA  >  NC_000913/3194925‑3195018                                                                                                                                                                                                        ATGCTTTCTCTGATGCAGTTTTGCCTTCCCCGAGCCGTCACGCAAAATGCTGCAACAACCTGATCATTTGCACTTTTTAGCGGAACGCAGATATAAAAAA                                                                                                    <  2:3967687/100‑1  TGCTTTCTCTGATGCAGTTTTGCCTTCCCCGAGCCGTCACGCAAAATGCTGCAACAACCTGATCATTTGCACTTTTTAGCGGAACGCAGATATAAAAAAT                                                                                                   <  2:520134/100‑1  TGCTTTCTCTGATGCAGTTTTGCCTTCCCCGAGCCGTCACGCAAAATGCTGCAACAACCTGATCATTTGCACTTTTTAGCGGAACGCAGATATAAAAAAT                                                                                                   >  1:3476756/1‑100   GCTTTCTCTGATGCAGTTTTGCCTTCCCCGAGCCGTCACGCAAAATGCTGCAACAACCTGATCATTTGCACTTTTTAGCGGAACGCAGATATAAAAAATC                                                                                                  >  1:814859/1‑100   GCTTTCTCTGATGCAGTTTTGCCTTCCCCGAGCCGTCACGCAAAATGCTGCAACAACCTGATCATTTGCACTTTTTAGCGGAACGCAGATATAAAAAATC                                                                                                  <  2:3722580/100‑1    CTTTCTCTGATGCAGTTTTGCCTTCCCCGAGCCGTCACGCAAAATGCTGCAACAACCTGATCATTTGCACTTTTTAGCGGAACGCAGATATAAAAAATCC                                                                                                 <  1:3224344/100‑1     TTTCTCTGATGCAGTTTTGCCTTCCCCGAGCCGTCACGCAAAATGCTGCAACAACCTGATCATTTGCACTTTTTAGCGGAACGCAGATATAAAAAATCCC                                                                                                <  2:2186254/100‑1     TTTCTCTGATGCAGTTTTGCCTTCCCCGAGCCGTCACGCAAAATGCTGCAACAACCTGATCATTTGCACTTTTTAGCGGAACGCAGATATAAAAAATCCC                                                                                                >  1:326443/1‑100     TTTCTCTGATGCAGTTTTGCCTTCCCCGAGCCGTCACGCAAAATGCTGCAACAACCTGATCATTTGCACTTTTTAGCGGAACGCAGATATAAAAAATCCC                                                                                                >  2:517843/1‑100                        CCTTCCCCGAGCCGTCACGCAAAATGCTGCAACAACCTGAGCATTTGCACCTTTTAGCGGAACGCAGATATAAAAAATCCCTGGCCCAAAAAGCCGGGG                                                                              >  1:3018389/1‑99                         CTTCCCCGAGCCGTCACGCAAAATGCTGCAACAACCTCATCATTTGCACTTTTTAGCGGAACGCAGATATAAAAAATCCCTGGCCCAAAAAGCCGGGGAT                                                                            <  1:2981523/100‑1                         CTTCCCCGAGCCGTCACGCAAAAGGCTGCAACAACCTGATCATTTGCACTTTTTAGCGGAACGCAGATATAAAAAATCCCTGGCCCAAAAAGCCGGGGAT                                                                            <  1:2983876/100‑1                          TTCCCCGAGCCGTCACGCAAAATGCTGCAACAACCTGATCATTTGCACTTTTTAGCGGAACGCAGATATAAAAAATCCCTGGCCCAAAAAGCCGGGGAT                                                                            <  2:4274751/99‑1                           TCCCCGAGCCGTCACGCAAAATGCTGCAACAACCTGATCATTTGCACTTTTTAGCGGAACGCAGATATAAAAAATCCCTGGCCCAAAAAGCCGGGGATTT                                                                          <  2:3729854/100‑1                              ccaAGCCGCCACGCAAAATGCTGCAACCACCTGATCATTTGCACTTTTTAGCGGAACGCAGATATAAAAAATCCCTGGCCCAAAAAGCCGGGGATTTTTT                                                                       <  2:2386613/97‑1                              CCGAGCCGTCACGCAAAATGCTGCAACAACCTGATCATTTGCACTTTTTAGCGGAACGCAGATATAAAAAATCCCTGGCCCAAAAAGCCGGGGATTTTTT                                                                       <  1:3907206/100‑1                              CCGAGCCGTCACGCAAAATGCTGCAACAACCTGATCATTTGCACTTTTTAGCGGAACGCAGATATAAAAAATCCCTGGCCCAAAAAGCCGGGGATTTTTT                                                                       <  2:660878/100‑1                              CCGAGCCGTCACGCAAAATGCTGCAACAACCTGATCATTTGCACTTTTTAGCGGAACGCAGATATAAAAAATCCCTGGCCCAAAAAGCCGGGGATTTTTT                                                                       <  1:3439161/100‑1                               CGAGCCGTCACGCAATATGCTGCAACAACCTGATCATTTGCACTTTTTAGCGGAACGCAGATATAAAAAATCCCTGGCCCAAAAAGCCGGGGATTTTTTA                                                                      <  2:4353509/100‑1                               CGAGCCGTCACGCAAAATGCTGCAACAACCTGATCATTTGCACTTTTTAGCGGAACGCAGATATAAAAAATCCCTGGCCCAAAAAGCCGGGGATTTTTTA                                                                      <  2:2396329/100‑1                               CGAGCCGGCACGCAAAATGCTGCAACAACCTGATCATTTGCACTTTTTAGCGGAACGCAGATATAAAAAATCCCTGGCCCAAAAAGCCGGGGATTTTTTA                                                                      <  2:1556735/100‑1                                GAGCCGTCACGCAAAATGCTGCAACAACCTGATCATTTGCACTTTTTAGCGGAACGCAGATATAAAAAATCCCTGGCCCAAAAAGCCGGGGATTTTTTAT                                                                     <  2:4077509/100‑1                                GAGCCGTCACGCAAAATGCTGCAACAACCTGATCATTTGCACTTTTTAGCGGAACGCAGATATAAAAAATCCCTGGCCCAAAAAGCCGGGGATTTTTTAT                                                                     <  2:2804953/100‑1                                 agcgGTCACGCAAAACGCTGCAACGTCCTGAGCATTTGCACCTTTTAGCGGAACGCAGATATAAAAAATCCCTGGCCCAAAAAGCCGGGGATTTTTTATA                                                                    <  1:4311839/96‑1                                 AGCCGTCACGCAAAATGCTGCAACAACCTGATCATTTGCACTTTTTAGCGGAACGCAGATATAAAAAATCCCTGGCCCAAAAAGCCGGGGATTTTTTATA                                                                    <  2:1967913/100‑1                                 AGCCGTCACGCAAAATGCTGCAACAACCTGATCATTTGCACTTTTTAGCGGAACGCAGATATAAAAAATCCCTGGCCCAAAAAGCCGGGGATTTTTTATA                                                                    <  2:2618143/100‑1                                 AGCCGTCACGCAAAATGCTGCAACAACCTGATCATTTGCACTTTTTAGCGGAACGCAGATATAAAAAATCCCTGGCCCAAAAAGCCGGGGATTTTTTATA                                                                    <  1:1922866/100‑1                                 AGCCGTCACGCAAAATGCTGCAACAACCTGATCATTTGCACTTTTTAGCGGAACGCAGATATAAAAAATCCCTGGCCCAAAAAGCCGGGGATTTTTTATA                                                                    <  2:3519838/100‑1                                 AGCCGTCACGCAAAATGCTGCAACAACCTGATCATTTGCACTTTTTAGCGGAACGCAGATATAAAAAATCCCTGGCCCAAAAAGCCGGGGATTTTTTAT                                                                     <  2:3018407/99‑1                                 AGCCGTCACGCAAAATGCTGCAACAACCTGATCATTTGCACTTTTTAGCGGAACGCAGATATAAAAAATCCCTGGCCCAAAAAGCCGGGGATTTTTTA                                                                      <  1:3064573/98‑1                                 AGCCGTCACGCAAAATGCTGCAACAACCTAATCATTTGCACTTTTTAGCGGAACGCAGATATAAAAAATCCCTGGCCCAACAAGCCGGGGATTTTTTAT                                                                     <  1:877452/99‑1                                   CCGTCACGCAAAATGCTGCAACAACCTGATCATTTGCACTTTTTAGCGGAACGCAGATATAAAAAATCCCTGGCCCAAAAAGCCGGGGATTTTTTATATC                                                                  <  2:1395213/100‑1                                   CCGTCACGCAAAATGCTGCAACAACCTGATCATTTGCACTTTTTAGCGGAACGCAGATATAAAAAATCCCTGGCCCAAAAAGCCGGGGATTTTTTATATC                                                                  <  2:3432255/100‑1                                   CCGTCACGCAAAATGCTGCAACAACCTGATCATTTGCACTTTTTAGCGGAACGCAGATATAAAAAATCCCTGGCCCAAAAAGCCGGGGATTTTTTATATC                                                                  <  2:3430985/100‑1                                   CCGTCACGCAAAATGCTGCAACAACCTGATCATTTGCACTTTTTAGCGGAACGCAGATATAAAAAATCCCTGGCCCAAAAAGCCGGGGATTTTTTA                                                                      <  1:1243310/96‑1                                     GTCACGCAAAACGCTGCAACGTCCTGAGCATTTGCACCTTTTAGCGGAACGCAGATATAAAAAATCCCTGGCCCAAAAAGCCGGGGATTTTTTATATCTG                                                                <  2:2082171/100‑1                                     GTCACGCAAAACGCTGCAACGTCCTGAGCATTTGCACCTTTTAGCGGAACGCAGATATAAAAAATCCCTGGCCCAAAAAGCCCGGGATTTTTTATATCTG                                                                <  1:12587/100‑1                                      TCACGCAAAATGCTGCAACAACCTGATCATTTGCACTTTTTAGCGGAACGCAGATATAAAAAATCCCTGGCCCAAAAAGCCGGGGATTTTTTATATCTGC                                                               <  2:664533/100‑1                                      TCACGCAAAATGCTGCAACAACCTCATCATTTGCACTTTTTAGCGGAACGCAGATATAAAAAATCCCTGGCCCAAAAAGCCGGGGATTTTTTATA                                                                    <  1:2804653/95‑1                                                                                            TATAAAAAATCCCTGGCCCAAAAAGCCGGGGATTTTTTATATCTGCGTTCCGCTAAAAGGTGCAAATGCTCAGGACGTTGCAGCGTTTTGCGTGACCGCT         <  1:3928263/100‑1                                                                                                       CCTGGCCCAAAAAGCCGCGGATTTTCTATATCTGCGTTCCGCTAAAAGGTGCAAATGCTCAGGACGTTGCAGCGTTTTGCGTGACCGCTCGGGCAA  <  1:4188457/96‑1                                                                                                                                                                                                        ATGCTTTCTCTGATGCAGTTTTGCCTTCCCCGAGCCGTCACGCAAAATGCTGCAACAACCTGATCATTTGCACTTTTTAGCGGAACGCAGATATAAAAAATCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/3194666‑3194563 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcccTGGCCCAAAAAGCCGGGGATTTTTTATATCTGCGTTCCGCTAAAAGGTGCAAATGCTCAGGACGTTGCAGCGTTTTGCGTGACCGCTCGGGGAA  >  NC_000913/3194925‑3195018

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.